Lsab012198.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lissocephala sabroskyi
Gene Symbol
stc
Assembly
GCA_037075105.1
Location
JBAMCP010004417.1:847-4235[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 2 2.8e+04 -4.1 1.6 15 19 392 396 391 396 0.81
2 17 0.057 7.9e+02 0.8 2.0 4 11 425 432 424 433 0.90
3 17 5.6e-06 0.077 13.6 16.4 4 19 439 454 437 454 0.94
4 17 2 2.7e+04 -4.1 1.2 6 10 480 484 480 484 0.96
5 17 7e-07 0.0097 16.5 14.6 1 18 490 507 490 508 0.92
6 17 0.37 5.1e+03 -1.8 1.7 7 13 512 518 512 519 0.83
7 17 1.5 2e+04 -3.7 0.9 6 10 538 542 537 542 0.83
8 17 6.6e-09 9.2e-05 23.0 14.7 1 19 548 566 548 566 0.98
9 17 2 2.8e+04 -5.5 1.5 11 16 597 602 597 602 0.65
10 17 1.3e-05 0.18 12.4 14.9 4 18 614 628 607 629 0.86
11 17 0.063 8.8e+02 0.7 13.2 1 11 669 679 669 691 0.79
12 17 4.8e-10 6.6e-06 26.6 15.5 1 18 696 713 696 714 0.97
13 17 1.4 2e+04 -3.6 1.5 6 10 743 747 742 748 0.61
14 17 2 2.8e+04 -7.4 10.6 10 18 761 770 751 771 0.78
15 17 1.1e-05 0.16 12.7 12.2 1 16 807 822 807 829 0.86
16 17 1.7e-06 0.024 15.3 13.3 1 19 839 858 839 858 0.96
17 17 1.2 1.7e+04 -3.4 0.1 8 12 874 878 873 878 0.76

Sequence Information

Coding Sequence
ATGGCCGAATATTGGCAACAGTTGACAAATTCTGAAAACGGCCATCCCTCCCCCACGGACAACGGGGACAGCGCCCCCTCCacccgcaacaacaactacgtCAACTTCAATCAGTTCATCATGCAGCACAACCTGGACGGCAGGGCCTCGGTGGCAACACCCAATGCGATGCAGGCCTACGCGCCGCCGACGAGCGGAAGCAACGGCGGCCCCTTGACGGCCTTCGATGCCTTCTGCGGCAATGCAGCCACCAGTCAGAACTTGAACTTTGGCCAGAACTTGTTCGCTTTCCAAAACGGCAATGGTGGCCTCGGCATGGCCGCCAGCTACTCAGACCTGTACGCTCCGTTCAGCGACAATCCGTTTGCCGCGGGCTTCAATATCAACGGCTCCAAGCTTCAGGCCGACGCCCCAGAATTCGTGCCGAATTTCGCCAAACTCAACATTTCCGCCCCAGCAGCGGAGGCAGCTCCAGACAATGCCAACGAGGCTCGCAGTCGTTCCCAGGCCAATGGCAACGACACCAACACTGCCAACCACTTCCAGGCTCCCCAACCAACAGACCAACTCGAATCGGCCCCGCAGACTCGCGCCGCCCacaaccgcagcagcggccgggCCCTCGACTACCGCTCAAATCAGCCGTACACGCCCACCGACAGAGACCGCGAGCGGGACAGAGAGCGCGATCGAGAACGCAACCGTGAGCGCGACCGCGACCGCCAGTGGGAGCCCaagcccaccaccagccgccagcgccgctccCACGACTACCGCGAGGACCGGGAGGACCGCTACGACCGCAAGAAACAGCAGCGCTACGACAACCACCGCAGCAACAAGCGCCGCGACGACTGGAACCGCAACCGCGACCGCCTCAACGGCTACCGCGTCGACGAACTGGACACCAGCAACGAAAGTCCACTGCCATCCCCCGAAAAGAAATCATCCTCCCCCAagagccaggcagccgccagcgccgacAACGAAAAGCTCTCCCAGCGCGAAAAACTCATGCGCGACATCGAGCAGCGCCGCCTCGAGTGCCTTGTCTGCGTGGAGCCCATCAAAGCCCAGCACCCCGTCTGGTCCTGCCAGAACTGCTACCACGTCCTCCACCTCAAGTGCACGGCCACCTGGGCCTCCAGCTCCAAGGCAGAGAACGGCTGGCGCTGCCCAGCCTGCCAGAACGTCCTAGTCGAGGTGCCCCGCGACTACCTCTGCTTCTGCGGCAAGCTCAAGAACCCGCCCGTCACCCGCACCGAGCTGGCCCACTCCTGCGGGGAGCTGTGCTGCCGCATCGAGGGCTGCCCTCATGCCTGCACCCTGCTCTGCCATCCAGGGCCCTGCCCGCCCTGCCAGGCCAACGTGCAGCGCCAGTGCGGCTGCGGACGCACCGTCAAGACCATGCAGTGCGCCCTCAAGGAGGAGATCCTGTGCGAGGCCGTCTGCGCCAAGCCGCTGAACTGCGAGCAGCACAGGTGCCAGCAGACCTGCCACGCCGGCAAGTGCACTCCCTGCGAGACGAAGATCGAGCAGACCTGCCACTGCGGCAAGCAACAGCGCGAGGTTCTCTGTACCAAGGACACCCATGACCGCCGGCACTACTCGTGCAGCAAGCCCTGCGGCAAGGAGCTGGCCTGCGGCAGCCACAAGTGCAAGGACTCCTGCCATGCCGGCCCCTGCCGCCCCTGCAAGCTGAGCCCCGGCCAGGTGACCTCCTGCCCCTGCGGCAAGGTGCCAGTGGCCCCCAACCAGCGCTCCTCCTGCCTGGACCCCGTGCCCACCTGCGAGGGCAGCTGCGGCAAGATCCTGCGCTGCGGCAAGGCAGCCCACCCCCACCAGTGCACCAGCAAGTGCCACCTGGGCCAGTGCCCGCCGTGCAACAAGCAGACGGCCGTGAAGTGCCGCTGCGGCCACATGGACCAGATGATCAAGTGCCGCCAGCTGTCCACCCGGGCGGACGACGCCCGCTGCAAGAAACGCTGCACCAAGAAGCGCTCCTGCGGCAAGCACAAGTGCAACCAGGAGTGCTGCATCGACATCGACCACGCCTGCCCGCTGCCCTGCAACCGCACGCTCTCCTGCGGCAAGCACAAGTGCGACCAGCCCTGCCACCGCGGCAACTGCCCGCCCTGCTACCGCAGCTCCTTCGACGAGCTCTTCTGCGAGTGCGGGGCCGAGGTGATCTACCCGCCGGTGCCCTGCGGCACCAAGCGCCCGCCCTGCAAGCGGCCCTGCTCGCGCGCCCACCCCTGCGAGCATGCGCCCCAGCACAACTGTCactcggccgccagctgcccgccGTGCATGATCTTCACCACGAAGTGGTGCCATGGCCACCATGAGCAGCGCAAGACGATCCCCTGCTCGCAGGCCAACTTCAGCTGTGGCCTGGCCTGCGGGCGCCCGCTGGGCTGCGGCCGGCATAAGTGCATCAAGCCGTGCCACGAGAATGCCTGCCAGGGGCCCGGGGAGGTGTGCAGGCAGCTGTGCACGACGCTGCGCTCGCACTGCGGACACAAGtgcttggctgcctgccaTGAGGGGTCCTGCCCGGAGACGCCGTGcaaggagctggtggaggtgCAGTGCGAGTGCGGGAACCGGAAGCAGAACCGCAGCTGCCATGAGCTGGCCAGGGAGTTTAGCCGCATAGCCACTGCCCAGCTGGCGTCTTCGATGGCGGAGATGTCGCGCGGCAACTACATGGAGCTGAGTGAGATCCTGGCGCCTGTGAAGATCAACAAGACCAACAGGACGCTCGACTGCAACGACGAGTGCCGGGTGATGGAGCGGAATCGGCGCCTGGCCATTGGCCTGCAGATCCGGAACCCGGACACGCAGCAGAAGCTGCTCACGAAGTACACGGACTTTGTGCGTTCGTTCGCCAAAAAGAACCCGGCGCTGGTGAAGTCGATCTACGAGACGCTCAGCGATCTGgtcaagctggccaaggagagCCGGCAGAAGTCGCGCAGCCACTCGTTCCCCACGATGAACCGCGAGAAGCGGCAGCTGGTGCACGAGCTGTGCGAGATGTTCGGCGTGGACTCGGTGTCGTACGACAAGGAGCCGAACCGGAATGTGGTGGCCACGGCGCACAAGGATCGGTCTTGGCTACCGGCCACCAGCATTATGGAGGTGATTGCCCGGGAGTCGGGGCAGCGGCGTGTGCCTGTGCCGACCAACGCCTGGGGACTGAAGAAATAG
Protein Sequence
MAEYWQQLTNSENGHPSPTDNGDSAPSTRNNNYVNFNQFIMQHNLDGRASVATPNAMQAYAPPTSGSNGGPLTAFDAFCGNAATSQNLNFGQNLFAFQNGNGGLGMAASYSDLYAPFSDNPFAAGFNINGSKLQADAPEFVPNFAKLNISAPAAEAAPDNANEARSRSQANGNDTNTANHFQAPQPTDQLESAPQTRAAHNRSSGRALDYRSNQPYTPTDRDRERDRERDRERNRERDRDRQWEPKPTTSRQRRSHDYREDREDRYDRKKQQRYDNHRSNKRRDDWNRNRDRLNGYRVDELDTSNESPLPSPEKKSSSPKSQAAASADNEKLSQREKLMRDIEQRRLECLVCVEPIKAQHPVWSCQNCYHVLHLKCTATWASSSKAENGWRCPACQNVLVEVPRDYLCFCGKLKNPPVTRTELAHSCGELCCRIEGCPHACTLLCHPGPCPPCQANVQRQCGCGRTVKTMQCALKEEILCEAVCAKPLNCEQHRCQQTCHAGKCTPCETKIEQTCHCGKQQREVLCTKDTHDRRHYSCSKPCGKELACGSHKCKDSCHAGPCRPCKLSPGQVTSCPCGKVPVAPNQRSSCLDPVPTCEGSCGKILRCGKAAHPHQCTSKCHLGQCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCTKKRSCGKHKCNQECCIDIDHACPLPCNRTLSCGKHKCDQPCHRGNCPPCYRSSFDELFCECGAEVIYPPVPCGTKRPPCKRPCSRAHPCEHAPQHNCHSAASCPPCMIFTTKWCHGHHEQRKTIPCSQANFSCGLACGRPLGCGRHKCIKPCHENACQGPGEVCRQLCTTLRSHCGHKCLAACHEGSCPETPCKELVEVQCECGNRKQNRSCHELAREFSRIATAQLASSMAEMSRGNYMELSEILAPVKINKTNRTLDCNDECRVMERNRRLAIGLQIRNPDTQQKLLTKYTDFVRSFAKKNPALVKSIYETLSDLVKLAKESRQKSRSHSFPTMNREKRQLVHELCEMFGVDSVSYDKEPNRNVVATAHKDRSWLPATSIMEVIARESGQRRVPVPTNAWGLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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