Lsab003425.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lissocephala sabroskyi
Gene Symbol
NFXL1
Assembly
GCA_037075105.1
Location
JBAMCP010000430.1:13721-16825[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 1.1 1.6e+04 -3.3 1.1 15 18 93 96 92 97 0.81
2 23 2 2.8e+04 -8.1 6.4 15 19 149 153 148 153 0.82
3 23 0.31 4.3e+03 -1.5 0.3 4 10 184 190 183 190 0.92
4 23 6.5e-08 0.00091 19.8 15.5 1 18 198 214 198 215 0.98
5 23 2 2.8e+04 -4.2 2.2 6 10 241 245 240 245 0.83
6 23 6.3e-08 0.00088 19.9 17.5 1 19 251 270 251 270 0.97
7 23 0.24 3.4e+03 -1.2 1.9 5 10 294 299 294 299 0.95
8 23 1.8e-09 2.5e-05 24.8 13.8 1 19 305 323 305 323 0.99
9 23 2 2.8e+04 -5.4 3.0 17 18 347 348 339 353 0.49
10 23 1.2 1.7e+04 -3.4 0.7 1 8 348 354 347 355 0.53
11 23 9.4e-08 0.0013 19.3 10.7 1 18 358 375 358 376 0.96
12 23 0.7 9.8e+03 -2.7 0.4 1 5 385 389 385 394 0.73
13 23 2 2.8e+04 -5.0 2.3 5 10 399 404 399 404 0.91
14 23 0.00036 5 7.9 17.2 1 18 410 427 410 428 0.97
15 23 3.4e-08 0.00047 20.7 14.7 1 19 437 455 431 455 0.90
16 23 0.00016 2.2 9.0 8.6 9 18 500 509 498 510 0.91
17 23 0.011 1.5e+02 3.1 5.2 1 12 522 532 522 532 0.96
18 23 0.86 1.2e+04 -2.9 1.4 6 10 588 592 587 592 0.88
19 23 1.7e-06 0.024 15.3 4.6 1 12 598 609 598 610 0.97
20 23 2 2.8e+04 -4.9 24.4 3 19 638 654 622 654 0.87
21 23 1.8 2.5e+04 -3.9 1.4 8 13 659 664 658 664 0.73
22 23 1.1 1.5e+04 -3.3 0.7 4 10 694 700 694 700 0.86
23 23 3.7e-06 0.051 14.2 10.8 1 17 706 721 706 725 0.95

Sequence Information

Coding Sequence
ATGGATAAGTTTGCTAAGGTCCAAGCCAAGAATCTAGCGGCAGCTAAAAAGCTAGCCGACTCGTACGACTCCAGCTCAGAGGATGAAGGCGAACTGGACGAGCAGCAGATTCTGGatttGCTCTATAAGCACTACAAGCCGGCCTCCGGGCCTTCCTCAAGCAATGACAAAGCCTCCAGCCGCACCTCGGCCTTCCTCGAGAACACCTTGCACTCGGGGGCGGCCACCTGCCTCATCTGCATTGGCAGCATCAAGCGCGTGGAGTCCATCTGGTCCTGCCCGAATTGCTACTGCTTTTTCCACTTAAACTGCATCCAGCGCTGGGCCAACGACAGCCTCATGCAGATGAAGAACAGGaccgagcagcaggccaacaACCAAGGCTACTACAACCACCTGGGGGAATATGTGCCGGCCAAGCCGCAGAAGTCGCTGCACTGGTGCTGTCCTCAATGCCGCAAGGACTATCAACCCTCGGAGAAGCCCAAGCAGTACGAGTGCTTCTGTGGCAAGGAGGTAAACCCCGAGCCGCAATCGTTTTTGGTTCCCCACTCCTGCGGCGAAATGTGCGGCAAACTGCTGCAGCCGAAATGCGGCCACGACTGCAAGCTGCTCTGCCATCCTGGGCCCTGTCCGCCCTGCgcccaaatggccaacaactcCTGCCTCTGCGGCAAGTCAGCCCTCCGCTCTGTGCGCTGCATCGACAAGCACTGGCAGTGCCAGCAATCGTGCAAAGCTCTGCTGAAATGCGGCAAGCATAAATGCAACCAGAAGTGCCATCGGCCGGGGCAATGCCCGCCCTGCACCAACAAAAGCCAGCAGCCCTGCGAGTGCCAGCGGGAGACCAAAACAGTCAACTGCTCCGACCTCAAGTGGAAGTGCCAGAAGGTGTGCGGGGCTGCTTATTCCTGTGGCCTGCACAGCTGCCAGAAAGTCTGCCACTCCGGGGACTGCGGGGAGTGCCCCTTGGGCCTGCCGCGCTCCTGCCCTTGCGGCAAAACGACCAAGCTGGGTCCTTGCAGCCAAAGCGTGGAGCCCTGCGGGGACACCTGCCAGAAGCTGCTGCCCTGCGGCCTGCACAACTGCGCCCAACGCTGCCATCGCGGGCCCTGCAATTTGTGCCTGATTATAACCAAGAAGAAGTGCCGCTGCGGCCTGCACGAGAAGGAGCTGCCCTGCTCCAAGGACTTCACCTGCGAGACCAAATGCAAGCTGATGCGAGACTGCGGCAAACATGCCTGCAATCGCAAGTGCTGCGGGGACCAGTGCCCGCCCTGCGAGAAGATCTGCGGCAAGCAGCTGTCCTGCAACAAGCACAAGTGCCAGTCCGTCTGCCACAACGGCCCCTGCTATCCCTGCAAGCTGGACTCCCAGGTCAACTGCCGCTGCGGCAAGACCCGCCGCAGTGTGCCCTGCGGGCGCGAGCGCAATGCCCGCATCGTCTGCCTGGAGCTGTGCAGGATAACAGCCAAGTGCCATCATGCGGTGAAGCATCGCTGCCACAAGGGCGAGTGTCCGCCCTGCGGGCAGATTTGCGGGCTGCCCAACGACACCAGCGGCTGCGGGCATCTGTGCGCTGCCCGCTGTCACTCGGCCATACGCCAGCCGCGCCCAGCCAATGGGGCCGTGAAATCCGCAGCCCACAAGTATGACTACAAATCGGCCCCGCATCCCATGTGCAAGGAGCCGGTGACGGTGACCTGCATAGGCGGCCACGAGGTGGCCCAGTGGCCCTGCTGGAACTCCCAGCCGTCGTCCTGCCAGCGCAAATGCTCCAGGCTGCTCAGGTGCGGCAATCACAAGTGCTCCCTGGTCTGCCACTCAGTGCCCCAGCCAGAGGACATGAAGGAGCAGGCTGGCTGCGGGCGTTGCGAGGAGGGCTGTGGCATTCCCCGGCCAGCGGGCTGCAATCACCCCTGCAGCCGGGGCTGCCATCCGCCGCCCTGCGCTCCCTGCAGCGCCCACATCAAGGCCAAGTGCCACTGCGGGCTCAGCCAGGTGGCCTACAAGTGCAACGAGTTCAACAACGTGGAGGGCGACTCGAAGGCAGCCAAAATCGAGCGCCGCGAGAGATTCCACAGCTGCGGCAGTCGCTGCCTCAAAAACTTTCCCTGCGGTCATCGCTGCCTGGCCACCTGCCACTCGGGTCTGTGCCCCAGCCCGGAGCTGTGCCGCAAGAAGGTGCGCATTTTCTGCTCTTGCAAGCGCAAGAAACTGGAGATATCCTGCGACAAGCACCGGGCCGGCCAGACCTTCCTCACTTGCGACGAGGAATGCGCCAGCGAGCAGTCGCGTTCGCTGGCCGCCAGGCAGGAGGAGCTTGAACGCCTGCAGCGAGACGAGGAGCTGAAAAACCGCCTCGAGGTGGAGAAgttcgagcagcagcagctgggcaagCGCAGGCCGCGGAACCGCAAGCCCCAGAACCTGGAGCAGGCCAAAAAGCCTTTcaactggcggctgctgggcatctACAGCGCGGCCATTGGGGCCGTGTTGGGGGCCATGGCCGTGGCCTTTTACGCGGCGGACAATTGA
Protein Sequence
MDKFAKVQAKNLAAAKKLADSYDSSSEDEGELDEQQILDLLYKHYKPASGPSSSNDKASSRTSAFLENTLHSGAATCLICIGSIKRVESIWSCPNCYCFFHLNCIQRWANDSLMQMKNRTEQQANNQGYYNHLGEYVPAKPQKSLHWCCPQCRKDYQPSEKPKQYECFCGKEVNPEPQSFLVPHSCGEMCGKLLQPKCGHDCKLLCHPGPCPPCAQMANNSCLCGKSALRSVRCIDKHWQCQQSCKALLKCGKHKCNQKCHRPGQCPPCTNKSQQPCECQRETKTVNCSDLKWKCQKVCGAAYSCGLHSCQKVCHSGDCGECPLGLPRSCPCGKTTKLGPCSQSVEPCGDTCQKLLPCGLHNCAQRCHRGPCNLCLIITKKKCRCGLHEKELPCSKDFTCETKCKLMRDCGKHACNRKCCGDQCPPCEKICGKQLSCNKHKCQSVCHNGPCYPCKLDSQVNCRCGKTRRSVPCGRERNARIVCLELCRITAKCHHAVKHRCHKGECPPCGQICGLPNDTSGCGHLCAARCHSAIRQPRPANGAVKSAAHKYDYKSAPHPMCKEPVTVTCIGGHEVAQWPCWNSQPSSCQRKCSRLLRCGNHKCSLVCHSVPQPEDMKEQAGCGRCEEGCGIPRPAGCNHPCSRGCHPPPCAPCSAHIKAKCHCGLSQVAYKCNEFNNVEGDSKAAKIERRERFHSCGSRCLKNFPCGHRCLATCHSGLCPSPELCRKKVRIFCSCKRKKLEISCDKHRAGQTFLTCDEECASEQSRSLAARQEELERLQRDEELKNRLEVEKFEQQQLGKRRPRNRKPQNLEQAKKPFNWRLLGIYSAAIGAVLGAMAVAFYAADN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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