Lsab006350.3
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- srp_1
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010000996.1:24669-29142[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-19 1.9e-15 56.8 4.2 1 35 309 342 309 343 0.97 2 2 4.7 1.3e+04 -3.5 0.3 6 14 457 465 456 471 0.72
Sequence Information
- Coding Sequence
- ATGTTCTTCTCAAACTACAACAACATGTACTTGAAGAATTATTGCTATAGCTCAGTCTATGCCACGCCGCTGCTGACGTCGGGCGCCAATGGAATGCAGTATGGCATGCCGGCAGGAGCCTcgcccacccacgcccaccagcagcaccaccaccagcagcagcaccaccagcacctccaccagcagcaccagcacaaCTCCTCCTCGAGCAGTCCTGGCCCGGTGGGCCTGACCGTGGGCAGCCTGGACGACGAGTATGGCTCGCCGAAGAGCAGCCCCAGCGCCGTGGGTGGCGGCGCGCTGCCCAACTTCCAGCGCATTGCCTCCGTCGGTGGCGTGGCTGGCTATGCCAGCAGTAGCGCCACTGGCGGCGTGGCCAATGGCTCTGGCATTGGCGCCGAACGCGGCTTCGCATCGATGACAAATTACCGCACTCATAACGAAACCTGGCCCGGTCATTTCGAGCCAATTAGCTTCGCGGCCAATGCAGCGGCCCAGGGCCAGCTGAGCGGGGTTGGCGGAGCGGCCACGAATGTGATACGCCGCGGGCCGACGCTGatggcagccgcggcggccgccgccggggcGGATGGTGTGAGAGGAGTCGTCTCGGCGGAGTCGGTCCACTTGCTGGCCTCGGCGAGCCATttgtcggcctcggcctcaCTCGCCTCATTGGCCGCTGATTCAGGCGGGGATTTCTATAAGAACTTCCAAAATAACGTGACCGGCGGTAGCGGTAGCCGTAATAAGGCCTCCTCGATgaacgccagcagcggcgcgggcgcgggcgcaggcgcaggctcGTCAGCAGCGTCGTCAGTCGTTGCATTAACGGCGGCGACCACAGCAACCACGACCGACGAGCACGTTAGTCGCGCCAATTCGAGACGCTTGAGTGCCTCGAAGCGCCAAGGACTCTCGTGCTCGAATTGCCTGACGACTTACACTTCGCTGTGGCGCCGCAACCCCAACGGGGAGCCGGTATGCAATGCCTGCGGTTTGTACTACAAGCTGCACAACGTGGCTCGGCCGCTCACCATGAAGAAGGACACCATCCAGAAACGCAAGCGCAAGCCCAAGGACACCAAGAGCGGAAAATCGAAGAAGTCTCGTATGGATACATCGGCAAATGTTTGCCACAATGTGGGCATGGCCATGGAGAGTCCTTTGGTGGATGCCAATGACGATCTGAAACCATTCTCATACCTGtcataccaacaacaacaccagcagcatcagcagcaacatcatcagcaacagcagcagcagcaacagcagcaaaccATTCTAAGCACTGAACATTCATTGGCGCCGGTCCGttcgccggccacgcccctaAGCATGGCATCTTCATTGTCGCCCACAACAACATCCACaccccagcagcaccaacagcaacagcagcagttgctTGATATGTCGTCctcggctggcaatttgtcgCCAACAAtgcagcaacaattgttgcACCAGCAGCTGAACAAGCCGCACAGCTTTCAATTGTCCCCCATAATGCCGACAACAAACACATCCTTGTCGCAGTCTTTGTACTCAACGCCATCGCCCACGCATATGCAtcataacaacaacaacatcagctcACAgtttaacaacaacaacaatgagaataatcataaatttataCAGAAATATCTGCAAGCTCATCAaatgaccaccaccaccgccagcagcaacagcaactcgaACGAGACATCACCgacacagcaacagcaacacttgTTGGTACAACAGCAACTTATACACCTGatgcccaactgtctttcggcagcaacagcggcagcagcagccaccttGCTGCCCTTACCCATCAAGTCGGAGTGCATggacacaacaacaacggtcaccacagcaaccacaacagcaacaacggcggcagcggcagcggaagCAGCAAAGCCCACAATACCGATCACGGCATCGAGCACATTATCATCACTGAGCAACATTATCAGCATGCCAAGTCCCTATCATCAGCAGGAACAGTCTCAGTCGCAGGCACCTGGTCAGCCGATGCCCTTGTCTAAATCCGTGCGCGGCTCGGTCTCGCCCAACTCCTCGTCCTACTATCACCTCAACCAACTAAGCGAAGAGGACAACGTCCAAGGCCAAACCATCAAGCTGGAGCAACTGgagcatcatcatcaccagcatCTCCacctgcaccaccaccacccacaacagcagcagcatggcGATATGATGCTCAGCCGGTCAGCGTCTGTGGATGAGCAGGACCATTTTGAATTGGCTGtctaccagcagcagttgcagcagcagcaagcccTTTTGGGGCACGAGGGGCATGCCTCTCCTTACGTTATACTGCCGGAATTCGAGCGAAAGTTCGTGGGCGACCGCGAGACTACTATCAAATTGGAATAG
- Protein Sequence
- MFFSNYNNMYLKNYCYSSVYATPLLTSGANGMQYGMPAGASPTHAHQQHHHQQQHHQHLHQQHQHNSSSSSPGPVGLTVGSLDDEYGSPKSSPSAVGGGALPNFQRIASVGGVAGYASSSATGGVANGSGIGAERGFASMTNYRTHNETWPGHFEPISFAANAAAQGQLSGVGGAATNVIRRGPTLMAAAAAAAGADGVRGVVSAESVHLLASASHLSASASLASLAADSGGDFYKNFQNNVTGGSGSRNKASSMNASSGAGAGAGAGSSAASSVVALTAATTATTTDEHVSRANSRRLSASKRQGLSCSNCLTTYTSLWRRNPNGEPVCNACGLYYKLHNVARPLTMKKDTIQKRKRKPKDTKSGKSKKSRMDTSANVCHNVGMAMESPLVDANDDLKPFSYLSYQQQHQQHQQQHHQQQQQQQQQQTILSTEHSLAPVRSPATPLSMASSLSPTTTSTPQQHQQQQQQLLDMSSSAGNLSPTMQQQLLHQQLNKPHSFQLSPIMPTTNTSLSQSLYSTPSPTHMHHNNNNISSQFNNNNNENNHKFIQKYLQAHQMTTTTASSNSNSNETSPTQQQQHLLVQQQLIHLMPNCLSAATAAAAATLLPLPIKSECMDTTTTVTTATTTATTAAAAAEAAKPTIPITASSTLSSLSNIISMPSPYHQQEQSQSQAPGQPMPLSKSVRGSVSPNSSSYYHLNQLSEEDNVQGQTIKLEQLEHHHHQHLHLHHHHPQQQQHGDMMLSRSASVDEQDHFELAVYQQQLQQQQALLGHEGHASPYVILPEFERKFVGDRETTIKLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -