Lsab002318.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- grn
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010000253.1:24128-49808[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-19 9.7e-16 57.7 4.7 1 35 470 503 470 504 0.98 2 2 1.2e-18 3.4e-15 56.0 6.3 1 35 530 563 530 564 0.97
Sequence Information
- Coding Sequence
- ATGGATATGACCTCGACAGCGGAGGCTGCCGCGCGCAGCTGGTACGACAGCCCGCGtctgggcggcagcggcggcggcggcggctcgcccCACACCAACGGCctgggcagcgccggcagcagcctggcccacagccaccacagccTGTCCAGCGGGGCCTCCTCGGCGGGCAGCACCCTGGGCGGCGGGGTTGGCTCCGGCGTCGGCCTGGACACCAGCGACATGAGCGCCTTCTACGCCCTCGAAAGCAACGGACATCACCGACGATATTACCCCAGTTACCATCAGCACACATCCCGAATGCCATCCTCGCACGCGACGCCGCAAGTCTGCCGGCCCCACTTTCACACGCCGCTGAGTCCTTGGCTAACCAGCGAGCACAAATCATTCGCCCCCGCCAGCGCCTGGAGCATGGGACAGTTCGCCTGCCCGCAGGAGCCCCAAGTCGACCACAAACTGGGGCAAGTCGGCCAAAGCCATCAGACGAcggctgccggccagcactCGTTTCCATTCCCACCGACTCCGCCAAAGGACTCAACGCCCGATTCAGTACAAACCGGACCATCGGAGTATCAGGCCGTGATGAACGCGTTCATGCACCAGCAGGCCACCGGGACTACCTCATTAACGGATGCCAGTTGTGCGCTGGACATCAAGCCCGCCATCCAGAACGCCAACGGCGGCCTCGGCGTGGGCGCGGGCGGctccggcagcgccgccagccacgCGCACTCCGCCGGTGGCAGCCAGTCCCAGTCCTCGGCGCCCAAGCAGAGAGAAGGTACCAATTCAAGTAACACTAATTCCACtagcaacaacgccaacaacgccAGCTCCGCGTCCCAGCAGCAGAGCACCAGCCACGCCTCAGCCTCCTCCGCCTCGACCTCCAACGGCCTGTTCGAGGGCACTGCCCAGGCGCACTACGCCaaccaggcggcggcggcggcggccgggaaCAGCTACGACGGCAGCAGCTATGCCAGTTACCACCATGCGGCCGCCCATCaccaggcggcggcagtggcggcggccaacatGTTCCAGAGCTCGGCCGTGCGGCACAGCAtgggagcggcagcggcggcggcggcggcccaccaccaccaccacagccatcACCAtggagtgggcgggggtgtgggcggtgggggtggcggtggcggaggtggaggcggTTTGGGTGGctcttcgtcctcgtcgtcctcgtcggtggGCGGTGTCCATCTGCACAGCAGCGTTTTGGGCATGACCGGCAATGCGAATTCACTGCTCCAGAATCatagcagcggcggcggcagcagcggcagcggcggcggtggcggcggcggcagcagcagccttggCGGCTTGGATGCGAAACCTGTGCGGACCAAACCCCGGACCAGTGCTGAGGGTCGGGAGTGCGTGAACTGCGGAGCCACCTCAACGCCCCTGTGGCGGCGCGACGGCACCGGCCATTACCTGTGCAATGCCTGCGGCCTCTACTACAAGATGAATGGCCAGAATCGTCCGCTGATAAAGCCAAAGCGAAGACTGACCCTGCAGTCGCTCCAGAGCGCCGCCAAGCGGGCGGGAACTTCGTGCGCGAACTGcaaaaccacaaccacaaccctTTGGCGGCGGAACGCCAGCGGCGAGCCAGTCTGCAATGCCTGCGGTCTCTACTACAAGCTGCACAATGTCAATCGTCCACTCACCATGAAGAAGGAGGGCATCCAAACCCGCAACCGCAAACTCAGCTCCAAGtccaagaagaaaaagggcctcggcggcggctgcctgcccaTCGGCGGCCATCTCGGCATGGGCGACTTCAAGCCCCTCGATCCCTCCAAAGgcttcggcggcggcttctcaGCCTCCATGGCCCAGCACGGTCATCTTTCCAGCGGCCTGCACCCGGCACATGCGCACATGCACGGTAGCTGGTATACCGGCGGCATGGGCAGCCTGGGCGCCTCGAGCGGCCTGCAGGGAGGCTTCTCGACGGCCGgctcgctgggcggcggggtggTGCCCCACTCGCAGCCGTACCACCTCGGTCTCACCTCCATGGGCACCTGGCGGACGGACTACACGTGA
- Protein Sequence
- MDMTSTAEAAARSWYDSPRLGGSGGGGGSPHTNGLGSAGSSLAHSHHSLSSGASSAGSTLGGGVGSGVGLDTSDMSAFYALESNGHHRRYYPSYHQHTSRMPSSHATPQVCRPHFHTPLSPWLTSEHKSFAPASAWSMGQFACPQEPQVDHKLGQVGQSHQTTAAGQHSFPFPPTPPKDSTPDSVQTGPSEYQAVMNAFMHQQATGTTSLTDASCALDIKPAIQNANGGLGVGAGGSGSAASHAHSAGGSQSQSSAPKQREGTNSSNTNSTSNNANNASSASQQQSTSHASASSASTSNGLFEGTAQAHYANQAAAAAAGNSYDGSSYASYHHAAAHHQAAAVAAANMFQSSAVRHSMGAAAAAAAAHHHHHSHHHGVGGGVGGGGGGGGGGGGLGGSSSSSSSSVGGVHLHSSVLGMTGNANSLLQNHSSGGGSSGSGGGGGGGSSSLGGLDAKPVRTKPRTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLYYKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGLGGGCLPIGGHLGMGDFKPLDPSKGFGGGFSASMAQHGHLSSGLHPAHAHMHGSWYTGGMGSLGASSGLQGGFSTAGSLGGGVVPHSQPYHLGLTSMGTWRTDYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01319414;
- 90% Identity
- -
- 80% Identity
- -