Lsab011619.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- -
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010003705.1:877-4212[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0017 0.21 12.7 2.6 2 23 418 439 418 439 0.93 2 16 0.022 2.8 9.2 2.0 3 23 480 501 479 501 0.95 3 16 0.07 8.7 7.6 2.0 3 23 509 529 507 529 0.95 4 16 0.055 6.9 7.9 1.3 1 23 535 558 535 558 0.98 5 16 0.00016 0.02 15.9 0.3 2 23 563 584 562 584 0.97 6 16 9.4 1.2e+03 0.9 0.1 2 19 593 610 592 612 0.83 7 16 0.00042 0.053 14.6 2.8 1 23 632 656 632 656 0.91 8 16 1 1.3e+02 4.0 0.3 3 21 663 681 663 682 0.89 9 16 5 6.3e+02 1.8 0.2 1 23 701 726 701 726 0.89 10 16 8.1 1e+03 1.1 1.0 1 23 741 764 741 764 0.91 11 16 0.0037 0.47 11.6 0.3 2 19 770 787 769 792 0.90 12 16 0.00053 0.066 14.3 0.2 2 23 796 818 795 818 0.96 13 16 0.00034 0.043 14.9 2.8 1 23 824 846 824 846 0.98 14 16 0.00013 0.016 16.3 1.9 1 23 850 873 850 873 0.95 15 16 0.0025 0.32 12.2 1.0 1 23 879 902 879 902 0.97 16 16 0.23 29 6.0 0.6 1 23 906 934 906 934 0.87
Sequence Information
- Coding Sequence
- ATGTCCGAGAGCAAAAAGGCGGCAATGGGCGCGGTAAGCAAAAGCTGCTTGCATTGCGGCGTTTTCAGTCCAAAGCTGAAGTACCAGCACATTTTCGACGACTTCGGTCTGGAGCTCGGCCTCGCCGACTTGGCCAAGAAACACTTCAACTGCCCGGTCGAACCGAAccccaaaaagcagcagcTGTTTTGCCAGAACTGTACAAATTGGCTAATCAAAAAGTTCGACCGCGATGAGCTCGAGAGGCAGGAGAGGAGGGGCAAGCGATCAACGCCTTCGCCAGTCCCAGCCAAGCGCGCGAAAGTTGTTTACCCGGCCGCCCGACCGCCAAAGGCTACAAAAGTGGCTGCCGTCTCCAAGCCGCTGGTGGTTGCCAGAAAGGAGGCGGGCAAACCCGTGGTGGTCACCAGGGCGTCGGCTGGAAAACCCTTGACGATTACCCAAGCGGCCAAACCGGCAACGGCCGCCAAGGCGCCCAGTGGAGCCATCACAGCAAAACCTCTGACGCctccgccagcccagccgaagAAGAGCAAAGCGCCAGCTCCCAAGGCAGCCACAAAGCCAGCGGACACCACCGAAATTGGCTTCACTGCCCTGCCCACTGGGGCGAGGCCCAGGCCGAATATTCTCAAGCGCCCCTCGCCCCAAGCTGTGGGCAAAAAGGCAACTCAGTTGCCGGCAAAAGCGGCCGTGGCCAAGAAGCACCACAAGCCCGACCAGATTGGCGTGCTGATTGAAAATCTCTTGAGCCACTCGGACGCGGAGCAGGTCGAGAGCGCGCCCGAGAGTCCGGCCGAAAGCGAAACCCTGCTGTCGATCGAGGAGGTGGAGAACCTGCGCCTTCAGGACCTCATCGAAGAGGACTTCTCGGTCCACGAAGACGAAGATGCCGAGCGCAGCGTGTCGTCTTTGAACGAAGTGAGCCAGGAGGACGAAGTGTTGTTGGTTAATTTGCTGCCCATCAGAAAGTCCGAGAGCATTGGCGACCCCTACGACTACCTGGACTCGGTGGTGAAGACCTCCTTCGAAAGCCTCACCTTCACCTGGCCCACCGTCTGCTCGCACTGCTCCTTCAAGGCCGAGACCTTTGAGATCCTCCTGGGCCACCTGGTGAGCAACCACAAGAAGGCCGGCAGCCAGTTCCAATGCCCCATCGAGGACTGCGACTTCAAAGCCCACGAGACCAAGAAACTCGCCATGCATCTGGTCCTCCAGCATGCCCCGATCCATGAtctttcaatttatggCAGCTGCCCGGACTGCAAGCTGACCTTCTCGAACTTTGCGAACTACAACAAACACTCGTGTGCTCATCTCTTCAAGAAGCGCCGCGGGGCTCAGCTGTTCTGCGAAATGTGCTCCATTGACTTTCCCTCCTGGCGACGCTTCAATTTCCACAAGCAGTTCCATTTGGAGAAGCACCGGCCGCGTCTTTGCTTCATTTGCGGCTACTCCAGCAACAATCTGGATGAGTTGTTCCACCATCTCCACTACGGCCACGAGCTGAAGGGCACGCTGTTCTGCGACCAATGCGACCGCATCTTCCGGGACCACAAGGTCTACGAGGACCACAAGTCCTCCCATGCCAACGTAGGCAGCTTCACCTGCTGCATTTGCAACACCAGCTGGGAGACACGCGGCCGCCTCAGTGGCCACATGCGCACGGTGCATGCGGCCAAGTTGTCGTGTGATTTCTGCCGGCGCGAGTTTGCCACGGAGGCAGCGCTGAATCGCCATGTGAAAACGCATCTGATCATCGAGCTGGAGGTTCAGGTGTGCGGCCACTGCGGCCTGCTCAgcgacaacaaggacaagaTGGCCATGCATGTGGACAACGAGGACGGCGACTGCTTCGGGGCCCCCGTCAACCCCGAGCTCATGCGGGAGGCCTACGTCTGCGAGCACTGCACTTCGCACTTCAAGACCAAAGACGACCTGCGCAGCCACCGGGCCACCGGCATACACAACGACAATCTGTTCTGGTGCCAGCCCTGCTACAAGGAGTTCTCCCAAATCAAACTCTACCGCGTGCActtgcgccagcagcagcagaatccCCTCGACACGGCCCACAGGAAGCTCGGCATTTCCCTGTTCTACATGTGCGACGAGGGGGACTGCGAGGATGCCTATTTGAATTGGAACTCGCTGTACACCCACAAGCGGCGCACGCACAACAGCGAGGCCGTGAAGACGCCGGTCAAGGACGACAAGAAGTTCATTTGCCAGTTCTGCCACATGGAGAAGCCCACCAAGATGTCCCTCTCCGTGCACGTGGcccgcagccacaacaacaACAACCTGCAGTGCTCGATCTGCAAGGCCTCCTACCGGGATGCGCAGGCCCTGAAGAAGCACAACGACTTCTGGCATGTGCCCGTCGAGTGCCCGCAGTGCTTCAAGGTGGTCAAGAACCGGCGCAACTACGAGACCCATTTAAACGTTGTGCACTCCAAGACCAAGCGCTACTCCTGCAGCGTCTGCTTCAAAGGATTCTACCACAAAAGCGAAATGGAGGCCCACCGAAAGCTCCACGAGCAGAGCTTCGCCTGCACTTACTGCCATTTCACTACGCGCAACGAGAGCTCCCTGCAGGTGCACATACGCGGCCAGCACTACAAGACGTATCCCTATGAATGCGAGCCCTGCAAGAAGAGCTTCGGCCGCAAACAGGCCTGGAAGAATCACTTCCGCCGCGTGCACGGCGACAAGTACACGTGCCGGGATTATTTGGAGGGCGGCTGCCTCAAGGGGTTCATGAGCTGCCGCGAGCTTAACCTGCACATCAAGCAGATCCACGACAGCGATTTGATTGTGGAGGAGTTCAATGCCGGCGAGGATCTCGAAGAGCCCAGAACGAAGGCCAACAGCGAGCTGCTGATAGACCAAATCGATGAGGAAGTCGACTACGAGGTGTTCGAGGAGGCCAAAGACTAG
- Protein Sequence
- MSESKKAAMGAVSKSCLHCGVFSPKLKYQHIFDDFGLELGLADLAKKHFNCPVEPNPKKQQLFCQNCTNWLIKKFDRDELERQERRGKRSTPSPVPAKRAKVVYPAARPPKATKVAAVSKPLVVARKEAGKPVVVTRASAGKPLTITQAAKPATAAKAPSGAITAKPLTPPPAQPKKSKAPAPKAATKPADTTEIGFTALPTGARPRPNILKRPSPQAVGKKATQLPAKAAVAKKHHKPDQIGVLIENLLSHSDAEQVESAPESPAESETLLSIEEVENLRLQDLIEEDFSVHEDEDAERSVSSLNEVSQEDEVLLVNLLPIRKSESIGDPYDYLDSVVKTSFESLTFTWPTVCSHCSFKAETFEILLGHLVSNHKKAGSQFQCPIEDCDFKAHETKKLAMHLVLQHAPIHDLSIYGSCPDCKLTFSNFANYNKHSCAHLFKKRRGAQLFCEMCSIDFPSWRRFNFHKQFHLEKHRPRLCFICGYSSNNLDELFHHLHYGHELKGTLFCDQCDRIFRDHKVYEDHKSSHANVGSFTCCICNTSWETRGRLSGHMRTVHAAKLSCDFCRREFATEAALNRHVKTHLIIELEVQVCGHCGLLSDNKDKMAMHVDNEDGDCFGAPVNPELMREAYVCEHCTSHFKTKDDLRSHRATGIHNDNLFWCQPCYKEFSQIKLYRVHLRQQQQNPLDTAHRKLGISLFYMCDEGDCEDAYLNWNSLYTHKRRTHNSEAVKTPVKDDKKFICQFCHMEKPTKMSLSVHVARSHNNNNLQCSICKASYRDAQALKKHNDFWHVPVECPQCFKVVKNRRNYETHLNVVHSKTKRYSCSVCFKGFYHKSEMEAHRKLHEQSFACTYCHFTTRNESSLQVHIRGQHYKTYPYECEPCKKSFGRKQAWKNHFRRVHGDKYTCRDYLEGGCLKGFMSCRELNLHIKQIHDSDLIVEEFNAGEDLEEPRTKANSELLIDQIDEEVDYEVFEEAKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -