Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: BCL11B
Assembly: GCA_037075105.1
Location: JBAMCP010001811.1:3180-13743[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.022 2.8 9.2 2.4 1 23 280 303 280 303 0.95

2 6 5e-05 0.0063 17.5 1.1 1 23 785 807 785 807 0.97

3 6 0.01 1.3 10.3 4.7 1 23 813 835 813 835 0.99

4 6 9.5e-07 0.00012 22.9 3.2 2 23 1093 1114 1092 1114 0.97

5 6 1.2e-05 0.0016 19.4 3.3 1 23 1120 1142 1120 1142 0.99

6 6 2.3e-05 0.0029 18.6 0.4 1 22 1150 1171 1150 1171 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.022	2.8	9.2	2.4	1	23	280	303	280	303	0.95
2	6	5e-05	0.0063	17.5	1.1	1	23	785	807	785	807	0.97
3	6	0.01	1.3	10.3	4.7	1	23	813	835	813	835	0.99
4	6	9.5e-07	0.00012	22.9	3.2	2	23	1093	1114	1092	1114	0.97
5	6	1.2e-05	0.0016	19.4	3.3	1	23	1120	1142	1120	1142	0.99
6	6	2.3e-05	0.0029	18.6	0.4	1	22	1150	1171	1150	1171	0.97

Sequence Information

Coding Sequence: ATGTTTGTCAGAATTGACGGTGGGAATTCCGATTCCACAGAGAACGATGGCGTTGCCGCACAGGACATCCTCACGTGCGGTGCGTGCCAAAAGACCTTTGCCCTCTCGGACATTGTCAAGTTCATCCAGCACAAGGTCCTGCAATGCAACAAAGAGAACTACGGCCAATGCACCACGCAGGGACCCTCAATGGATCGCGATGCCGAGGAGGGTCGCCCGCTGAGCTTGGTCAACCGCCGGCCCTCGATTTCGGCGCCGATCAGCAACCGCAAACAGACCACcggctccagGATACACACACCACCGCCAAGTCCAGCGGACCTGCTGGCCGacggcgccagcagcacgcCCAAGCGGCTGGTAGACGAAAACGACAATACGACACCCAAAGACAGTGAAacggccgccggcctggagGCCACGGTGACGGCCAAGAGTCCATCGGCTGTCATTGACCGCCAGCCGgaagacgaggacgaggagctggcggccgccgccgctgcctcgccAAATCACAGCCGGCGCAGTAGCTGCGATTTGGAGGCGGAGATGGAAgcctcggcagcggcaacggcagcggccagcgatgagccggccacggccacaatGCCAGCCGATGTCGATGAGGACGACAAGCCGCCAAAGGTCAAAGAAGAGCCCTTTGCCGATgaggagaacaacaacaacaacgacaatgacgAACGacaggacgaggaggaggatgGGCCGTTGGCAGGCAGCTCGGCAAATCCGGACGatggccagccgctggccaaaaGGCCCAAAATCGAAGTGGTCGATGCCGAGGCCAACACCGTGCATACAGAGCCCAGCAACTACACCTGCTCCACCTGCAAGACGCGCTACACATCCGCCTGGCGGCTCATCCAGCACGTCCAGCACTCGCACGGCGTGAAGATTTACGTGGAAAGCTCTGCCGCGCCCGGCACCCTGACCGTGGCCACGCCCGCTGCCCTCAACAGCGCGGtgattgccgctgccgcggccgcagcagcagccgccgcctcgaTCACCCCCAGCGGCAGCCCCAACTCCTCGGCGggcggctcggctggcggAGTCAGCGCTCTGCCTTTGCATGCCCTGATGCAGGCAGCCTCGCCCAAGCGCTCGgccaatggcagcagcagcagccacaacaacagctgcaacaccagcagcagcagcaacaccagcaacaacaacaacaccagcaacagcaacctgAGCTCGCccacagcccagcagcagcttttGTCGGCCAGCCGCAAGGACTCGAGCTCCGGCCGAGTGAGCTCGGCTGAGCTGATGGCCACGCAaatgctgcagcagcagcaacagcagcagcagcaacaacagcagcagcaacagcaacaacagcagcagcaactcagCTCGGccatggccgcggccgccatgCGCCACcatccgctgctgccgccgcccgaggCCATGCACGCCAACCCCTTCAACTTGCTGAggatgccgctgccgccggccctggCCCAGAATCCGGTAGTTCCTAGCGTGGCGCCGCTCTTCGGGCGCCCGCATCCCGATCATTACCGCATGGAGCAGCTGGTGAGCGAGCAGTTCCGTCACCATGGCTTCAatttggcggctgctgcggccgcggccgcccagtTCAATAgcgccggccaggcagcctctgccagtggcagcaacTCCTCGAGCGGTGGTGGCCCGGCCAATGCCGCTGGCTCGGCTGGCACGGCCGGCAGTGCGCTGCTGGATCGCCCACCTtcgagcaacagcagccatcGCGGCTCAGTGCCGCCAGCCACGCTGCCGCCTTCCATGACCGCTGGCGCGGGCCAGGCGAATGCGCTTAgcggggcagccgctgcggcaACCACTGGAGcggtggctggccagcaggcgaCGGCGAACTTGGAGCCTCAACAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCATTGTTAACTCGAGCTCGCCGAGTCCTCGACAGAAGCAATCGCCGCATTTCGCGAGCCCCTCACCCTCGCCCTCccaccagccgctgccgcagcagcagcccgcggcgggggcagcaacaacaacagcgacaacggccTCGTCGGGGTCGGCCTCGCTGCATCAGCTACCTCAGCTTCCCCtggcaacaaccacaacaacttCAGCCTcagccacaacagcagcggcgaacCCCCAGCGACCGCATTCACTGACGCCGCCCGAGAAAATGCTCGACCATTTGGGAGCAGAGAACGGCGGACTGCACTCGACCCCGCGCTCGGCCTCGACGCCGCCGTCGAAGCCTTCGTCGCTGCAGGACTGCTTTGCCTGCGGCTTCTGCGACAAGAAGTTCCGCTTCGAGAACAACCTGATCAtccaccagcgccagcacaCTGGCGAGAAGCCGTACAAGTGCACGGCCTGCGACTTTGAGTGCTCGCATATTCAGAAGCTCATGAAGCACATGCGGGTGCACCGCAGTCCGGCTGGCAATGACCAGGACAATGGCGGAGGTCCCGGCGGCGACACGGGCAGCAATGCCGACTCGATTGAGACGAACGAGGCGGATGGCGATGCGGACAACGACATCGAAGCGGATCCGGACGACTCGGAGCCGGAGGAGGACATGGGCGATGAGGATGGCCTcgatgacgaggacgacgacgagctggacgaggtCGACGATGTGGACTACGAGGCCGAGGACCTGAGCGTCAACAATCGCATCGACGGCAAGAGCCAAAGCCCCAAGACCACCAGCTCAGGAGCCACCTCGCTGGTAGGCGAACTGATGGACAAGTTTGGACTCTCCAACATTGCCCAGTACTCGGAGGCCTATAAGCAGGCCCTGCAGGAGTCTGGCAGTTTGAAACATCTCGGCAAGGATGTGGGcggagacaacaacaaccgcgcCCGCTCCCCGCTGCCGGTGATCGGCGACAAGCTGAACGGCCTGCCGGTGGCTGCTTTGCGCCTCAGGGATGAGTTCGCCAAGAACTGCTCGATGTTCCAGCAGCCCGCCCCCCAGGATGCCCCCGCCCAGGTGCCGCTCTTCAACCCCTTCCCCAACCCCTTCGAGCTGTCCAAGCGCATGAAAATGGACGGCGGCGACTGGTGGGGCATGTCGGCCCTCCACCGCAACGAGGCCCTCTTCGAGAATCTAAAACTGAAGcccctcggcctgggcggcgccaACTCCCTGCTCCAGGGCCCACTGCTCAAGAAGGAGAGCCGCCAGCGCAACGACACCTGCGAGTTCTGCGGCAAAGTCTTCAAGAACTGCTCCAACCTGACGGtccaccgccgcagccacaCCGGCGAGAAGCCCTACAAATGCGAGCTCTGCTCCTACGCCTGCGCCCAGAGCTCCAAGCTGACGCGCCACATGAAGACCCACGGCCGCACCGGCAAGGACGTCTACCGCTGCCGCTTCTGCGACATGCCCTTCAGCGTCCCCTCCACCCTCGAGAAGCACATGCGCAAGTGCGTCGTGAACCAGGGCaaggcggccgcggcggcagccaatGCGGCCaatgccgtggccgctgcccaggctgcccaggcggctgcccagcaactccaggcggctgccgcggcccagcagctgcccgcccaggcccagtTATCGCCGCTGGCCTCCTTTGGGGCCCACCAGTTTGGcgctggaggcggcggcggcggtggtggctctGCGGGCAGCCACAATCTGTCGCTGCCGGGCAGCGTGAGCGGCGACAACGACTCGAATGCGTCGTCCAGTCTGCCGGCCCATCCCATTTCGCTGAAGGAGGAGGCATGA
Protein Sequence: MFVRIDGGNSDSTENDGVAAQDILTCGACQKTFALSDIVKFIQHKVLQCNKENYGQCTTQGPSMDRDAEEGRPLSLVNRRPSISAPISNRKQTTGSRIHTPPPSPADLLADGASSTPKRLVDENDNTTPKDSETAAGLEATVTAKSPSAVIDRQPEDEDEELAAAAAASPNHSRRSSCDLEAEMEASAAATAAASDEPATATMPADVDEDDKPPKVKEEPFADEENNNNNDNDERQDEEEDGPLAGSSANPDDGQPLAKRPKIEVVDAEANTVHTEPSNYTCSTCKTRYTSAWRLIQHVQHSHGVKIYVESSAAPGTLTVATPAALNSAVIAAAAAAAAAAASITPSGSPNSSAGGSAGGVSALPLHALMQAASPKRSANGSSSSHNNSCNTSSSSNTSNNNNTSNSNLSSPTAQQQLLSASRKDSSSGRVSSAELMATQMLQQQQQQQQQQQQQQQQQQQQQLSSAMAAAAMRHHPLLPPPEAMHANPFNLLRMPLPPALAQNPVVPSVAPLFGRPHPDHYRMEQLVSEQFRHHGFNLAAAAAAAAQFNSAGQAASASGSNSSSGGGPANAAGSAGTAGSALLDRPPSSNSSHRGSVPPATLPPSMTAGAGQANALSGAAAAATTGAVAGQQATANLEPQQMDFYSQRLRQLAGTTSPGAGSIVNSSSPSPRQKQSPHFASPSPSPSHQPLPQQQPAAGAATTTATTASSGSASLHQLPQLPLATTTTTSASATTAAANPQRPHSLTPPEKMLDHLGAENGGLHSTPRSASTPPSKPSSLQDCFACGFCDKKFRFENNLIIHQRQHTGEKPYKCTACDFECSHIQKLMKHMRVHRSPAGNDQDNGGGPGGDTGSNADSIETNEADGDADNDIEADPDDSEPEEDMGDEDGLDDEDDDELDEVDDVDYEAEDLSVNNRIDGKSQSPKTTSSGATSLVGELMDKFGLSNIAQYSEAYKQALQESGSLKHLGKDVGGDNNNRARSPLPVIGDKLNGLPVAALRLRDEFAKNCSMFQQPAPQDAPAQVPLFNPFPNPFELSKRMKMDGGDWWGMSALHRNEALFENLKLKPLGLGGANSLLQGPLLKKESRQRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRTGKDVYRCRFCDMPFSVPSTLEKHMRKCVVNQGKAAAAAANAANAVAAAQAAQAAAQQLQAAAAAQQLPAQAQLSPLASFGAHQFGAGGGGGGGGSAGSHNLSLPGSVSGDNDSNASSSLPAHPISLKEEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -