Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: -
Assembly: GCA_037075105.1
Location: JBAMCP010000523.1:13221-15127[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.14 18 6.6 0.0 2 23 369 391 368 391 0.93

2 7 0.02 2.5 9.4 3.3 1 23 398 421 398 421 0.97

3 7 0.00027 0.034 15.2 5.8 1 23 426 448 426 448 0.98

4 7 9.6e-06 0.0012 19.8 0.1 1 22 454 475 454 477 0.90

5 7 1.5e-06 0.00018 22.4 3.2 1 23 483 505 483 505 0.99

6 7 1.2e-05 0.0015 19.5 1.4 2 23 512 533 511 533 0.97

7 7 0.00012 0.015 16.3 1.3 1 23 539 562 539 562 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.14	18	6.6	0.0	2	23	369	391	368	391	0.93
2	7	0.02	2.5	9.4	3.3	1	23	398	421	398	421	0.97
3	7	0.00027	0.034	15.2	5.8	1	23	426	448	426	448	0.98
4	7	9.6e-06	0.0012	19.8	0.1	1	22	454	475	454	477	0.90
5	7	1.5e-06	0.00018	22.4	3.2	1	23	483	505	483	505	0.99
6	7	1.2e-05	0.0015	19.5	1.4	2	23	512	533	511	533	0.97
7	7	0.00012	0.015	16.3	1.3	1	23	539	562	539	562	0.97

Sequence Information

Coding Sequence: ATGGAGACTTGCGGGCTTATTTACGTGGAAAGGGAAACTAAAATGTTCTCCTTGCGCTGTTCGTTTTGCCCGACGGACATGGAAATTACAGAAGGACAGGAATTCGTCCAGCATTTCCTAAATCTTCACATCAACAAAGCCGCCCTAGTCAAGGAAAAGGACGAACCGCCAGTATCGCCACTTCCTGTGGCCAAAATCGAAGTCGAGGACTTCATAGACGAAGACGAGATGCCCTTGGATTGGATTAAAGCACAGGAAACTGGGGAAACCGAGTCCATGCCAGTGCCAGAGTCCGAGCCGTCTGGCAACGAGTCGGTCGCGTCCAGCGTCCCCGTCTCCGATAACGAAGACTCGGAAGCCGAACCCGAACCTGATCCCGATGGGCCCACAGGCGAGGACGCCGATGCACTGCCAGATCCACTTTTCAAGTTCAATCCAACATTCTTTCGCAACAGTCCCCACACCACGGAGTTCATAGCCTCCTTCAAAAGCTATCCCTGCCTTTGGGATCCCGAGCATGTGGACTTCAAGAACACCGAGGCCTGCAATGAGGCCCAAAAGCAGCTCATCAAGGAAATGCACACCAAAATCGGCATCCAGTTCAATGAGAAGACCCTGCTGGCAGCCATCAAGAAAATGTACCGCCAGTACGATCAGGTCAAGAAGCGTGTGGAGAACGGCAGCCTCAAGTCGAACTCGGTGGCCTATGGGCATTATTCCAATTGTGATTTCCTCAACAAGATGAGTGCCGACAAAAACAACTCCGAGAGCTGTGAGAAAATCCAGTTGGACTttatgaagaaaaacaaactgacaACAGACTTCATTAAGAAATATTCCAAATACCCGCAGCTGTATGACCCCAAGCACAAGGAGTTCTCCAAAATGTACTCCCGTCTGAATGCCTACGAAAAGATGGCCATGGAAATCCAAATCCCAGACACAGACCTCACCAACGACGACATCTTCCTGGCCATCCAAAGCCTCCGCCGCTGGTACTACCGCAGCAAGAATGCCCCCAACTCCACAGACTTCAGCCCCAGCGAACAGTATTACCTAAAGAGCTGCCAGTTTCTGCCCCCCAAAATGTTCAAGCAGCAACTCACCTGTGAAATCTGCCGCAAGGTCGTCTTCTCGGATCCCGTCCTCCAGGCCCACATGGTGAAGATTCATGACATCGGGGAAATGCCATTCAAGTGCACACTCTGTGATCGTAGCTTCCTGGCGCGCTGCGAGCTCACCACTCACCGCCAGCGCGTGCACATTGGCAAGATCCACAAGTGCACTTTTTGTGTGCACAGCTTTTCCACCACCTCAGATCTGCGGCTCCATGTGCGCACCCACACCGGGATCAAGCCGTATATCTGTGAGCAATGCGGGAAGGCATTTAGGCTGAAGTCGCAGCTGAATGTGCATTACGTGGCGATTCATACGACGATCCGGGCGTTCAAGTGTGACATGTGCCCGAAGGACTTTAAGAAGAAGGTCCACCTGACGGACCATATTAAGACGCATCTTAATATCAAGGACAAGGTGTGCAATACCTGTGGCAAGGCTTTCTCCAGCGGCCATTCGCTGATACGGCACCGGCAGATCCACTCGGAGATCAAGAAGTTTGTATGCAAGCTCTGCGACTCCAGGTTCTCCCAGTTCGTTGGCCTCAATTCGCACATGAAACGCACCCACAATATTGTGCGCAACAATGCCCAACAGACGAAGCCTGAATCTGAAGCAGAAACCAATTAA
Protein Sequence: METCGLIYVERETKMFSLRCSFCPTDMEITEGQEFVQHFLNLHINKAALVKEKDEPPVSPLPVAKIEVEDFIDEDEMPLDWIKAQETGETESMPVPESEPSGNESVASSVPVSDNEDSEAEPEPDPDGPTGEDADALPDPLFKFNPTFFRNSPHTTEFIASFKSYPCLWDPEHVDFKNTEACNEAQKQLIKEMHTKIGIQFNEKTLLAAIKKMYRQYDQVKKRVENGSLKSNSVAYGHYSNCDFLNKMSADKNNSESCEKIQLDFMKKNKLTTDFIKKYSKYPQLYDPKHKEFSKMYSRLNAYEKMAMEIQIPDTDLTNDDIFLAIQSLRRWYYRSKNAPNSTDFSPSEQYYLKSCQFLPPKMFKQQLTCEICRKVVFSDPVLQAHMVKIHDIGEMPFKCTLCDRSFLARCELTTHRQRVHIGKIHKCTFCVHSFSTTSDLRLHVRTHTGIKPYICEQCGKAFRLKSQLNVHYVAIHTTIRAFKCDMCPKDFKKKVHLTDHIKTHLNIKDKVCNTCGKAFSSGHSLIRHRQIHSEIKKFVCKLCDSRFSQFVGLNSHMKRTHNIVRNNAQQTKPESEAETN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -