Lsab004496.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- -
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010000611.1:18295-23056[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.018 2.3 9.4 0.1 3 23 162 182 161 182 0.97 2 13 0.095 12 7.2 1.6 3 23 189 210 187 210 0.95 3 13 8.5e-06 0.0011 19.9 1.4 1 23 425 447 425 447 0.99 4 13 0.98 1.2e+02 4.0 0.4 1 23 453 476 453 476 0.94 5 13 0.44 55 5.1 1.2 1 23 496 519 496 519 0.96 6 13 0.00029 0.036 15.1 2.2 3 23 740 760 739 760 0.97 7 13 0.042 5.2 8.3 0.5 1 23 766 789 766 789 0.96 8 13 0.0031 0.39 11.9 0.4 1 23 869 892 869 892 0.97 9 13 0.00022 0.028 15.5 0.4 1 23 1028 1051 1028 1051 0.96 10 13 1.8 2.3e+02 3.2 4.8 1 23 1060 1082 1060 1082 0.98 11 13 7.3e-05 0.0092 17.0 0.6 1 23 1107 1132 1107 1132 0.95 12 13 0.004 0.5 11.5 0.4 1 23 1137 1161 1137 1161 0.95 13 13 0.00016 0.021 15.9 3.6 1 23 1167 1190 1167 1190 0.96
Sequence Information
- Coding Sequence
- ATGTCCAAAAGAAGATCGCTCACAGAGCGCTCGGTCGACTACAAGTCGGCGTGTCGCTGCTGTTTAAAATCGGACGCGGAGTTCTATCAACTTGATTCATTTACTGTGGCGCGCAATATAGAGCTGTACAGCGAAGACGGGGATGCATCCGCTTCCACCGACGAACGCATTCCCCTGTTGCGCTGCTTGCTCTTCTGCATACGTGCCGAGAATGTACCCGAGCTTCCTCAGCAAATCTGCGAAGGCTGCTATCAAAGCCTCCAGATTGCCTATCATTTTATTCAGAACACCCTGCGCGCCCATGAAATTCTTTGCCACAAGCTCTGCCCAGAGAAATCGCAATCCCATCGCAAAAGCTCCCAACCCAACGGCCTCCCAAGACGCAGCTTCACGGAACTCGAAGATGTTCCCTCCACCAGTACTGAAGGCAGAGTTGATGGCGTGTCGTCGACTCAAAAACTCCTATCTCGAGAGCCAAACGACTGCAAAGTATGCGGCGAAGTCGTCTACGGTCGCTTAGAGCTCCAGAAGCATCTAAGCATGCACTCAGaaaagCTCAGTAACTGCAACATATGCAGTTTTCAGACAAGCCAGCAACGCCTCCTGTACGAGCACTACCGCCAAAAACACGCACTCTCGCCCTTGCAGGTGCAGAACAAGATGAAGTTAGGCCAAAGGGCACTGACATCCACGGCAGTGACTGCCAAACCACTGACAATCAATAGCGGCCCAAGCGCCACCGTCGTCAGGAATGAGCCTCTTGTCGAGGTGTGCACCCTGGAGGACATGGAGCAGCTGATTCCAACGGTCCTGAGGCCAGAGGACTACAAGCATCCTCGCACAGATGCAGGTCCTTCTTCTAAGATGCCCAAGTGGGCTCCTCAAGCGGCCAAAGCCCCTGAAGCGGCAGATGTCCAAAAGCTTGATTCCCTCAACGCTCCTACCTCCATTAGCGGTGTTTCCTTTCAGCCGGGAGGCGACCTAAGCATCGGCACGGAGTACTTGGTGATGCCCGATGGATCCCTCCAGCCACTGGAAGAAGGTGTGGTCATTGAGTACATAAACGAAACCGACTGTAAGGCGAAAGCCAGCAAGAAACCGTCTCACACGCCAAACTTGGCAATGAAAAATCTACTGAGCGACTCACTGCCGAACGAGGCGGCAAACGGAGGCATTCCCACCATCGCAGTGGACACAAAAGAAACTAATGCACCAGAGGAGAAAGTGGTACAAATACAAGCCAAGCCCTTTCGACCGGCCACCTCCCTGAAGTACAAGTGTCGTTTGTGCCCCAAGTCCTTCTCGACGGAGGCTCGCCTCaaatctcaccaactcacccACAGCAATCTGCCCAAGTTCTACTGCGATGTGTGCGCCTATTACACGCTCCGAAGTGCGGACCTGCTGCAGCACTACAAGACTATCCACCCGAAGGTGCTGGCCGACGGCAAGCGCCCCCTGATGCTCACCTCCCAGGGCCGTCTCTTCTCATGTGACCTGTGTCTGTTCGAGTCAAAGAGCGTCAATCAGCTCCGTGCCCACTACAACAAGAAGCATCTGATTGAGCCCAATGAGGTCCAGTTGCGTCCCAGCTGGGACGAAGAGGTGGCTAACGGGTCCAATGAGTCTGCCTTGGCCAAGGCGAGCGACCAGCAGCCAACGGACCTGCCCATCGGTATTACCTATCCTTCGGCCACCGTCACCTCGGTGGCTGTGATGGAGCAGCCAACGGCGTCGCCTGCAGTGACTTTCGCGCCTAGCATGACCGAGGAGCTGGCTTTGACCAACTCTACAATGGCGACGATAAATGCGGTCGGCGACTTTGGCGGGGGAATCGagacggccaacaaaatacAAGTGATGCACCCAGCAAATCATGCGCCCATTTTCGGGGACATGCAGGACTTCATAGACAACACAGATGTGGCGGCCATTTGCACCATACCGGCAGACGGGATGCCAATGCCCGATGGCGAGGACATAGTcattgacaacaacaacatcagcctGGAGTTCGATGCGAATCTCTTCGAGGACtttgaggaggaggaggacgacgtcGGGGTGGTCGAAGTGGGCGGCGTGGACGGCGCCGACATCGACGAcatcaacgacaacaacgatgCCGAAATCGACCAGAATCTCTTGCTcaccagcgacgacgacgacgtcgacgactTCGACGACGAGCAGCCCAAGCATCTCCAGAAACCCTTCTGCGTGTACTGCAACCGCAAGTTCACCAGCCAATACAAATTCGAGAACCACATGTTCATCCACCGCGGACTGGCGCCCTACCGCTGCGAGCTCTGCACCAACATCTACAACATCAAGCGAGAGCTGATCCGCCACTACAAGGGCGTGCACAAGCGCATGCCCACCCGCGACATGGTCCAGGCCCGGGGCGACAAGGTGGCCGTGGACCGCACGAACATCGAAAAGATCCAAATCGACCCCAGCAAGAGTCCCGCTTTGATGTGCGCCAAGTGCCCGTTCGAAACCGAGTTGGAGGCTGAGGTGTACAAGCATTTGAACGCCCACCACGGCATCAATGAGAGTGCAACCAGCCAGGCCGGCGAGATTTTCATCATACGCAAATTACCGTTCGAGTGTCCGCGCTGCATACGCACATTTGCAGCGAAAGAAATGCTGACCCGCCACCTGCAGCGCAGCCATCTGGTGGACACAATCATAGAGCTGAATGCCACTGAACAGCTGCCGGAAGGCGAGGGCTTGGCTCTGGGGTCTGACTTAATTGAGAGCAGTAAGATTGACATTGAGgaggcggctgtggcggcttcCCGGCTTGCCGACAAGCCGTCCTTGCTgacgcccaccaccagctccacatcaccgccaccgccaccgttgTCATGCATAACCTCAGCGCCCAGCCTGCACTCCCCCTCGCCAGCCTTGTttcccacgcccacgcccatcgATGCCTTCGAATTTGACTACGACATGATGGGGAGTCCCAGCAAACCGTCCGCTGTGCCCCCCAGCGGTAGTGAACTGCCCGCAGCCCCGCCAGAGTCGAAAGCGGAAAGTCTAGAGAGCCCACTGCCACAGACGCCGTTCTACGTGTGCCGGCAATGCAATCGCACCTTCGGCGAGCTGGACCAGCTCAACAAGCATCTCAACGAGGAGCACCAGCCCGGCGACAGTGGCCAGGAGTTCAAGTGCAGCTTTTGCAGCAGTGTTTGCCGGACCCAAACTCTACTGGACTTCCACATGCGGCAGCATTCGGCACGACAGGAACTGTGCCCGGCGGAAGTCCTGGGGCCCGCCAGCCCCGTCTGCGAGAGTAAGGAGAGCTTTAAGTGCGACTCAGATGGTTGTGGCAAGGAATTTAGCTTGAAGCGTCTGCTCACTAGGCATTTGAATGCCTTCCACCGCGCCAAGCGCTTCAACTGCACGTGGCCCAACTGCGGGCGTCGGCTTcccaaccaccagcaactGGAGTGGCACTTGCGGGGCCACTCGGCGCCGCAGCACTACAAGTGCCCGCAGTGCGGCCGCTGCTACATCCTCAGGCAGCACTTGCGGAAACATGCGTTAATGATGCACGAGCTGGAAATGTCCAATGACGATCTGGCTAAGGTGTTCCAGGTTAATGCGAccgcctcggccggccagttgaAGGGCCTGAAGGTGGTTGCGCGGCGATCGGCTTTGAAGGCGAATGTGCGAAACAAGCTGGCAGAAGAAGcggatttgaatatttctcgGCGATTGCGTCGCTCTCGGGCGACGCCTTCCATCGACAACGTCGGCTCTCCCAAATAA
- Protein Sequence
- MSKRRSLTERSVDYKSACRCCLKSDAEFYQLDSFTVARNIELYSEDGDASASTDERIPLLRCLLFCIRAENVPELPQQICEGCYQSLQIAYHFIQNTLRAHEILCHKLCPEKSQSHRKSSQPNGLPRRSFTELEDVPSTSTEGRVDGVSSTQKLLSREPNDCKVCGEVVYGRLELQKHLSMHSEKLSNCNICSFQTSQQRLLYEHYRQKHALSPLQVQNKMKLGQRALTSTAVTAKPLTINSGPSATVVRNEPLVEVCTLEDMEQLIPTVLRPEDYKHPRTDAGPSSKMPKWAPQAAKAPEAADVQKLDSLNAPTSISGVSFQPGGDLSIGTEYLVMPDGSLQPLEEGVVIEYINETDCKAKASKKPSHTPNLAMKNLLSDSLPNEAANGGIPTIAVDTKETNAPEEKVVQIQAKPFRPATSLKYKCRLCPKSFSTEARLKSHQLTHSNLPKFYCDVCAYYTLRSADLLQHYKTIHPKVLADGKRPLMLTSQGRLFSCDLCLFESKSVNQLRAHYNKKHLIEPNEVQLRPSWDEEVANGSNESALAKASDQQPTDLPIGITYPSATVTSVAVMEQPTASPAVTFAPSMTEELALTNSTMATINAVGDFGGGIETANKIQVMHPANHAPIFGDMQDFIDNTDVAAICTIPADGMPMPDGEDIVIDNNNISLEFDANLFEDFEEEEDDVGVVEVGGVDGADIDDINDNNDAEIDQNLLLTSDDDDVDDFDDEQPKHLQKPFCVYCNRKFTSQYKFENHMFIHRGLAPYRCELCTNIYNIKRELIRHYKGVHKRMPTRDMVQARGDKVAVDRTNIEKIQIDPSKSPALMCAKCPFETELEAEVYKHLNAHHGINESATSQAGEIFIIRKLPFECPRCIRTFAAKEMLTRHLQRSHLVDTIIELNATEQLPEGEGLALGSDLIESSKIDIEEAAVAASRLADKPSLLTPTTSSTSPPPPPLSCITSAPSLHSPSPALFPTPTPIDAFEFDYDMMGSPSKPSAVPPSGSELPAAPPESKAESLESPLPQTPFYVCRQCNRTFGELDQLNKHLNEEHQPGDSGQEFKCSFCSSVCRTQTLLDFHMRQHSARQELCPAEVLGPASPVCESKESFKCDSDGCGKEFSLKRLLTRHLNAFHRAKRFNCTWPNCGRRLPNHQQLEWHLRGHSAPQHYKCPQCGRCYILRQHLRKHALMMHELEMSNDDLAKVFQVNATASAGQLKGLKVVARRSALKANVRNKLAEEADLNISRRLRRSRATPSIDNVGSPK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -