Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: SCRT1
Assembly: GCA_037075105.1
Location: JBAMCP010000426.1:36131-38493[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.1e-07 2.6e-05 25.0 1.5 1 23 521 543 521 543 0.99

2 5 0.00064 0.08 14.0 0.3 2 23 553 574 552 574 0.97

3 5 1.4e-05 0.0018 19.3 0.4 1 23 578 600 578 600 0.97

4 5 4.7e-08 5.9e-06 27.0 0.6 3 23 608 628 606 628 0.98

5 5 6.7e-05 0.0084 17.1 2.2 1 21 634 654 634 655 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.1e-07	2.6e-05	25.0	1.5	1	23	521	543	521	543	0.99
2	5	0.00064	0.08	14.0	0.3	2	23	553	574	552	574	0.97
3	5	1.4e-05	0.0018	19.3	0.4	1	23	578	600	578	600	0.97
4	5	4.7e-08	5.9e-06	27.0	0.6	3	23	608	628	606	628	0.98
5	5	6.7e-05	0.0084	17.1	2.2	1	21	634	654	634	655	0.94

Sequence Information

Coding Sequence: ATGCCACGCTGCCTGATTGCCAAGAAATGGAAGGCATATCCCTGGCTGGATCGGGCCGAGGATAACGCCAACACCGACACCAGCAACGCCGAGGTCGCGGTCACCGTGGCCCCCCTCAAGTCCCGGCGCTCCACcatggacgacgacgaggagatcGATGTGGTGGGCGACAATGCCAAGATCGTCAATATAATCAAATCGGAGAAACATCAACGCACAATCGAACTCAACAACGACAGCACAACgtcaacgacaacgacaacaacatcagcattAGCGGCCacctcagcagcagcagcaacaaccacagcagcagcaacatcgcaaacaacaacgcccACGGCCAAGTGCTGGGGTCCCTCGTCGCCCACAGCGGGCACCACAgcgcccagcccgccgccgcacTCGCCCGAGGCAGCCACGCGAGTGGCCACCAACGTCTACAACGGCTATAGCCGCGAGTTGTCGCCGCTGCACTACACCGCGTACCTGCCTCGAATGGAGAGCGACAGCGAAATGACCGTGATACGGGCAGCGGCCACTGCGCTGGTGACCGGCGCTTCCAATGTCCTGGCGGCCAGCCCGCTGGACCAGCAGCACTTGGCCGCCTACcagacgccgccgtcgtccaccACCTCGTCGCCGTCCTgctcgcccaccagccacgGCAGCAGCCACGATCGCTTCAGCCCCCACACCGTGCACATCAAGTCGGAGTCGTACGAGGCGCCCACAatggctggcctgggccaccGGCACACGGCCAGCGAGCGGAAGTGCTTCAGCAGCACGGGGGCCAccctgtcgctgccgccgaaGAAGAAGGACATTTACCGGCCGTATTCGCTGGACGACAAGCCCAGCCACTATGCCTCCGCCCATGTGGAGagggaggcggtggtgggtggctaTCGCAAGCGTGTGCCGGCCGAAGAGGACCTGCATGCGGCCCATGCCATCCTCGACCTGAGCGCCTCGACCGCATTCCATCCGCCCACGCAGCCTCACCAGCTGCAGCACCAGCGACCGCCAGCAACAGTGCATCCATTGGCAGTGCATGCGAATGCAGCCCACTCAAGCCTCAGCCTCGCAGCCGCTCACAgccaccacgcccactccATCCATGCACACTCGcatgcccagccagccccccAGATGCAGGAGGCGCATGCGCAGGTGCGCGGCACGTCATCGATTGCCGAATTGGCTGCAGCAGCCAGTGCCGTTAATGAACAACGCCCCTTGAGCAATGCCTCCAGCGCCCTGAGCGCCAGCGactcctccaccagcagcggctgcgagCGCCAGCCCAGCAGTCCGGTGAGTGTCCAGaacgagaacaacaacacaaccaaCCAGCTGGACCGAGAGCATGGCCATGGGGCTGTGAGTCCGCTGCAGGGACACCTCAACGGCGAGGAGGGCGATGGCAGTGGCAGTTCCTCGGCCAAGACGGTAGCCTACACGTACGAGGCCTTCTTCGTGAGCGACGGCCGCTCGAAGCGCAAGCACGTGGCCGATCCCGCGGCCGTCGTGGTCCAGGATCAGCAGAAGACCAAGTACACCTGCTCGGAATGCGGCAAGCAGTACGCCACCTCGAGCAACCTGTCGCGCCACAAGCAGACCCATCGCTCCCTCGACTCGCAGTCGGCCAAGAAGTGCCACACCTGCGGCAAGGCCTACGTGTCCATGCCGGCCCTGGCCATGCACGTCCTCACCCACAAGCTGTCGCACAGCTGCGGTGTATGCGGCAAGCTCTTCTCGCGCCCCtggctgctgcagggccatCTGCGGTCGCACACGGGCGAGAAGCCCTACGGCTGCGCCCACTGCGGCAAGGCCTTTGCCGATCGCTCGAACTTGAGGGCCCACATGCAGACCCATTCGGTGGACAAGAACTTCGAGTGCAAGCGTTGCCATAAGACATTCGCTTTGAAGTCGTATCTGAATAAGCACCTGGAGTCGGCCTGTCtgaaggacgaggaggagctgaTGATGTCGCTGCATGGGGCGGGCGGCGATAGCAACAGCGAGAGTGGGGCCAGTTTGGCCTCGCCCACCCACGAGTTCCAGCAGCGGTTCGATGGAGCCGCCTTGGAGCGGGTCAAGATGGAGCCGACGCCCAGTGGCTTGGGCCTGCCGGTGGGCCTGGGCGCCTTTGCCGCCGTCTAG
Protein Sequence: MPRCLIAKKWKAYPWLDRAEDNANTDTSNAEVAVTVAPLKSRRSTMDDDEEIDVVGDNAKIVNIIKSEKHQRTIELNNDSTTSTTTTTTSALAATSAAAATTTAAATSQTTTPTAKCWGPSSPTAGTTAPSPPPHSPEAATRVATNVYNGYSRELSPLHYTAYLPRMESDSEMTVIRAAATALVTGASNVLAASPLDQQHLAAYQTPPSSTTSSPSCSPTSHGSSHDRFSPHTVHIKSESYEAPTMAGLGHRHTASERKCFSSTGATLSLPPKKKDIYRPYSLDDKPSHYASAHVEREAVVGGYRKRVPAEEDLHAAHAILDLSASTAFHPPTQPHQLQHQRPPATVHPLAVHANAAHSSLSLAAAHSHHAHSIHAHSHAQPAPQMQEAHAQVRGTSSIAELAAAASAVNEQRPLSNASSALSASDSSTSSGCERQPSSPVSVQNENNNTTNQLDREHGHGAVSPLQGHLNGEEGDGSGSSSAKTVAYTYEAFFVSDGRSKRKHVADPAAVVVQDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHVLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLESACLKDEEELMMSLHGAGGDSNSESGASLASPTHEFQQRFDGAALERVKMEPTPSGLGLPVGLGAFAAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -