Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: -
Assembly: GCA_037075105.1
Location: JBAMCP010001172.1:5863-9338[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00029 0.036 15.1 0.1 1 23 144 167 144 167 0.96

2 14 0.0026 0.33 12.1 3.6 2 23 216 238 212 238 0.90

3 14 0.0014 0.18 13.0 0.2 1 23 327 350 327 350 0.93

4 14 0.11 13 7.0 0.7 2 23 399 421 398 421 0.96

5 14 0.058 7.3 7.9 0.4 1 21 479 499 479 502 0.84

6 14 4.6 5.8e+02 1.9 0.1 2 14 521 533 520 545 0.83

7 14 0.00053 0.067 14.3 3.3 2 23 553 575 553 575 0.96

8 14 2.2e-05 0.0028 18.6 0.9 1 23 639 662 639 662 0.96

9 14 0.00011 0.013 16.5 0.2 1 23 691 714 691 714 0.94

10 14 0.0005 0.063 14.4 2.3 2 23 764 786 763 786 0.97

11 14 0.0022 0.28 12.3 1.5 1 23 865 888 865 888 0.91

12 14 0.0098 1.2 10.3 1.0 1 21 940 960 940 961 0.95

13 14 0.00046 0.058 14.5 0.2 3 23 988 1009 987 1009 0.95

14 14 2.8 3.6e+02 2.6 0.3 1 23 1027 1051 1027 1051 0.76

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00029	0.036	15.1	0.1	1	23	144	167	144	167	0.96
2	14	0.0026	0.33	12.1	3.6	2	23	216	238	212	238	0.90
3	14	0.0014	0.18	13.0	0.2	1	23	327	350	327	350	0.93
4	14	0.11	13	7.0	0.7	2	23	399	421	398	421	0.96
5	14	0.058	7.3	7.9	0.4	1	21	479	499	479	502	0.84
6	14	4.6	5.8e+02	1.9	0.1	2	14	521	533	520	545	0.83
7	14	0.00053	0.067	14.3	3.3	2	23	553	575	553	575	0.96
8	14	2.2e-05	0.0028	18.6	0.9	1	23	639	662	639	662	0.96
9	14	0.00011	0.013	16.5	0.2	1	23	691	714	691	714	0.94
10	14	0.0005	0.063	14.4	2.3	2	23	764	786	763	786	0.97
11	14	0.0022	0.28	12.3	1.5	1	23	865	888	865	888	0.91
12	14	0.0098	1.2	10.3	1.0	1	21	940	960	940	961	0.95
13	14	0.00046	0.058	14.5	0.2	3	23	988	1009	987	1009	0.95
14	14	2.8	3.6e+02	2.6	0.3	1	23	1027	1051	1027	1051	0.76

Sequence Information

Coding Sequence: ATGGATTTGTGGACTTCCATGCTCTCAACCGACGCCGACTACCCCGACGAGGAGGTCGACGCGGAGGCGGAGGGCGAACCCGAGGACAATGGCGAATTCGACGGGCCTGAGAGCCCCGCCAACGGGGAGgaggacaacgacaacgacgacgaccagtTCGAGGAGGACGAACAGCCCAAGAAACATTCCATTGAGGCCGACGACGATGCTCTCTTCGACTTCGAGGCAGACAACCagaaccaaccaaccgagtCACAGCCACAGGAGCAGCTCCTGCCCTCCGCCAAGCGCCAGGCACGGCTTTCCCTGCCTTTGCCGGGTGGCCGCCAGTCTGCCAGCTCCATAGGCCTGCCGCTGCGCCCTACAACCTCCCAGATCAACGCCACCGACGAGAACGGCGTGCCCATCAACTATGAGCTGGGCGTGGTCTACATTTGCCCGGCCTGCGGGGCGGAGTACCGCCAGCAGGATTTGTGGAAGCGCCACATGAACCAAATGCATCAGTACAACACCCGGCGGGGCCTGAACTTCGTGGCCATCGACAAGCTCTACCATCGCTGCCTGGAGTGCAACAAGCACATTGCCATGCACAGCCGGGAGAATCTGCTGAAGCACAAGTTCACCCATTTGCCCTTCCGCTGCACAAAGTGCTTCATTTGCAAGCGCGAGTACAAATACCGGCAGGACCTGATGGTGCATCTGAGGATCACCCACAGCGACGAGGTGGTGGCCATGATGCGCGAGGGCGGCGACTCTCCAGCGGGCCAAAAGACACGCCTAAGGGAGCCTCGCATAGACTCGGAGACGCGTGGGAAACGGCAGAGTTCCTTTTATGAGCTGGAgaacgacgaggacgagcaggaGGAAGCCGACGAGCAGCCTTTGCCGGTGGTGGAAGAGAAGCCCGCCAGTCGCCCCAAGAAGCGACGCAATGGCGGCTCTTCTACTGCTGCTGAGATCTGCGAGGATTACATCCATTATATGTGCCCGGACTGCGGCACCGAGTGCGACACGCAGGCCCAGTGGCTGCAGCACATCGAGTTCGTCCACGACTACGTGAGCCGCCGCGGCCTCAACTTCCGCTCCCTGGACATGCAGATGCAGTGCCTCGAGTGCCAAATGTTTGTGACGCCCAACACCATCAAGACGCTGCAGCAGCACAAGTTCAGCCATCTGCCGCACAAGGATTGGCTGCGCTGCAAGCTCTGCTACAAGGGCTACGGGGACCTGCAGCGTTTGATCTCCCACCTCATGAAAAAGCACAACCTGGAGAGCCTGCTGCCGGAGGAGGCTGTCCAAGACGATTGGCCGCCTACCCAGGAGCCTTTGGAGCCCGAGGAGCCCTtccaccagccgccagcccagctCTGGGACGATGTGCCGCGCCAGCGTGGCCGCCTCACCATAGACGACATGTTCGAGCCTCACATAGACTATTTGTGCCCCGAGTGCGGCAAGGAGTTTCTGGAGAAGAAGCACTGGCGGCTCCATGTGGTCCAGGTCCATGAGATGAAcgacctggccaagctgaaCTTCGAGGTGATCAATGACCGCCAGCTGAAATGCTCCGAGTGCCAGAAGATCATCACGAATGCCTACGGCATCCAGAATGCCCAGCAGCATAGGATTACCCATTTGCCCTACAAGGCTTATGCCCGCTGCAGGAAGTGCCACAAATCCTACACGGATCGCAAGGGTCTGGTCAAGCATTTGGCCACCTACCACCAGGTGGGCTGCGAGGgtcgccagcggcagcaagggccgccggccaggctgcccaGAAGGCAAATAGTGACCATAGCCAATGAAACCTTCGAGATTATCCACCTGGACGAGCGGGAGGAGCTGCCTGGAGGCGAGGAGAACGACTTCGGCGAGCAGATGatggccgacgaggaggagttCGCGGCTGCCCACAAATGCGAGGAATGCGGCGCGCATTTCACCAGCTCGGCGGCTCTCCAAACTCACATCCTAAACGACCACCAGGAGGCGCCTccagccgagccagccaagccgccaGCTCTCCTTGATCTCGGCCCCAATCCCACCATCGAGAAAAGTTACATTTACCTGTGCCCGTCCTGCGGGGAGTCCTACAAAACGCAGTTCGAGTGGCGCCGCCACATCAACGAGGCCCACAACTTCGACAAGCGGCATTTCCTGAACATGCGGCAGCTGGACAAGTTCCGCTATCAGTGCATCCAGTGCAAGGATATCGTATGCAACTCCAAGCTGAAGGGCTTGCAGGATCACCACTTCCGCCACCTGCCACATCGCCTGTACCTCAAGTGCCTGATCTGCGGCACTTGCTACAACCACAAGCCCAACATAGCGGCCCATCTGCGCACGCGCCACAACATCGTGGACAGCAGTGCCTCCGGGGAGCGGGAGTCGGGCTACCATCACCGGCTCATGAAAGAGGCCCGATCCCCGCCAGCCCTGCCGCCGGCTCCGGTCTCCCCGCCTCAACCAACCGCCCCGCGCTCGCTGAAGCCCAACGCCGGCTCCTTGccacgccggccagccgagcTGAATACTCTCGAGGACAGCATCTCCTACCACAATGCCGTGGACCTGGACTTCATCACTTACTTCTGCCCCAAGTGCAACAAGAACTTCGACTCGCATGCCTTTTGGCGCAAGCACATCGTCGAGGTCCACAATTATAACTGCCGCGAGGGGCTGAACTTCCGGCAGATCGACAACCACCACTACCTCTGCCTGGAGTGCTACAAGCGGGTGACGGTGACCCACACGAAGGGCGCCATCGGGCAGCTGCAGTCGCACAAGTTCCGCCATTTGCCCCACCGCTCGTTCAAGTGCCTCACCTGCGGCGGCGAGTTCGTGCGCAAGCAAATGTTCTTCAAGCACCTCAACCGGGAGACCAACCGCTGcgaccagcagccggcggtaGGACGGCCGTCCTCGCCGGAGGCTGCGCCGGTTTACCGGCTGCTGTGCCCGCAGTGCGGCCAGGAGTTCCGGCAGCGCGGGCAGTGGCGCGAGCATTTGAAGGATCTGCATGGGTTCGGCCAGCCGGAGGCTTTGAACTTCCAGAAGATCAGCGATTCGCTGTACAACTGCGGCGAGTGCCAGGAGACCCTGGAGACCAACAGGCTGAGGGACCTGCAGGAGCATCGGATCAAGCATTTGCCGGTGGCCGCTTACATACGCTGCCGGCTGTGCGAGGCTGTGGCCAAGGATGTGGGGTCCTTgaaggagctggaggagcatATAAGATTAGAGCATCCCACGCTGGCCGAGGATGAGGGCAAAATGCTGGCTTTGTTGCaggacgacgaggccgagggcggcaACATCGAGGAGGACAACCAGGGCAGCGGTCCTTatatgccgctgccgccgcatctCCTAGACGACGCGGACGACTTGGACTTTGATGAGCAGTATTTGCTAGGCTAA
Protein Sequence: MDLWTSMLSTDADYPDEEVDAEAEGEPEDNGEFDGPESPANGEEDNDNDDDQFEEDEQPKKHSIEADDDALFDFEADNQNQPTESQPQEQLLPSAKRQARLSLPLPGGRQSASSIGLPLRPTTSQINATDENGVPINYELGVVYICPACGAEYRQQDLWKRHMNQMHQYNTRRGLNFVAIDKLYHRCLECNKHIAMHSRENLLKHKFTHLPFRCTKCFICKREYKYRQDLMVHLRITHSDEVVAMMREGGDSPAGQKTRLREPRIDSETRGKRQSSFYELENDEDEQEEADEQPLPVVEEKPASRPKKRRNGGSSTAAEICEDYIHYMCPDCGTECDTQAQWLQHIEFVHDYVSRRGLNFRSLDMQMQCLECQMFVTPNTIKTLQQHKFSHLPHKDWLRCKLCYKGYGDLQRLISHLMKKHNLESLLPEEAVQDDWPPTQEPLEPEEPFHQPPAQLWDDVPRQRGRLTIDDMFEPHIDYLCPECGKEFLEKKHWRLHVVQVHEMNDLAKLNFEVINDRQLKCSECQKIITNAYGIQNAQQHRITHLPYKAYARCRKCHKSYTDRKGLVKHLATYHQVGCEGRQRQQGPPARLPRRQIVTIANETFEIIHLDEREELPGGEENDFGEQMMADEEEFAAAHKCEECGAHFTSSAALQTHILNDHQEAPPAEPAKPPALLDLGPNPTIEKSYIYLCPSCGESYKTQFEWRRHINEAHNFDKRHFLNMRQLDKFRYQCIQCKDIVCNSKLKGLQDHHFRHLPHRLYLKCLICGTCYNHKPNIAAHLRTRHNIVDSSASGERESGYHHRLMKEARSPPALPPAPVSPPQPTAPRSLKPNAGSLPRRPAELNTLEDSISYHNAVDLDFITYFCPKCNKNFDSHAFWRKHIVEVHNYNCREGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPHRSFKCLTCGGEFVRKQMFFKHLNRETNRCDQQPAVGRPSSPEAAPVYRLLCPQCGQEFRQRGQWREHLKDLHGFGQPEALNFQKISDSLYNCGECQETLETNRLRDLQEHRIKHLPVAAYIRCRLCEAVAKDVGSLKELEEHIRLEHPTLAEDEGKMLALLQDDEAEGGNIEEDNQGSGPYMPLPPHLLDDADDLDFDEQYLLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -