Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: -
Assembly: GCA_037075105.1
Location: JBAMCP010001598.1:4510-6418[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.42 53 5.2 0.1 2 20 230 248 229 248 0.95

2 9 4.8 6e+02 1.8 3.4 6 23 261 278 261 278 0.98

3 9 0.00056 0.07 14.2 2.2 1 23 284 306 284 306 0.99

4 9 7.7e-05 0.0096 16.9 1.5 1 23 315 337 315 337 0.99

5 9 0.0001 0.013 16.5 3.4 2 23 346 368 345 368 0.94

6 9 0.00044 0.055 14.6 0.0 3 23 376 396 375 396 0.96

7 9 0.00018 0.023 15.8 0.6 2 23 405 427 404 427 0.97

8 9 4.6e-08 5.8e-06 27.1 1.5 1 23 464 486 464 486 0.98

9 9 2.4e-06 0.0003 21.7 3.4 1 23 492 515 492 515 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.42	53	5.2	0.1	2	20	230	248	229	248	0.95
2	9	4.8	6e+02	1.8	3.4	6	23	261	278	261	278	0.98
3	9	0.00056	0.07	14.2	2.2	1	23	284	306	284	306	0.99
4	9	7.7e-05	0.0096	16.9	1.5	1	23	315	337	315	337	0.99
5	9	0.0001	0.013	16.5	3.4	2	23	346	368	345	368	0.94
6	9	0.00044	0.055	14.6	0.0	3	23	376	396	375	396	0.96
7	9	0.00018	0.023	15.8	0.6	2	23	405	427	404	427	0.97
8	9	4.6e-08	5.8e-06	27.1	1.5	1	23	464	486	464	486	0.98
9	9	2.4e-06	0.0003	21.7	3.4	1	23	492	515	492	515	0.98

Sequence Information

Coding Sequence: ATGACGTGCTTTTTGTGCCTACAGCCCGCCGAGGGGCTGGGAGGGCGCATAGAATTCTCCTCCCCCGATGCTGACCTCATGGACgtgaaaaaaatcattgaaatgcatttccaaCTCCggACCGAAGATACCACTGACGAAACAAACTGCATTTGCGGACTGTGCTGGGAGCAGACACTGTCCTTCCACAACTTCTACCTGAGCGTCGAGCTGGCCCACAACAACGCCCTCAACGACATCAAAACCGAGCTGGAGCAGTTCGCCGAATCCCCTCTCCTGGACCCCGACCCCGATGTGGTGTATGACCCCGAACCTGAGCCCGCAATCATTGTTGAGAGCGTGGAAACCACCGCCAAGCGACGACGGGGACGCCCACGGCGCAAGCCACTGGAAATCCCCGAGGCAACAGGTGACATTGTGACCACCAGCGAGCTGAAAAGTGTGCTGGAGCAAATAAACCTAAACGAGATCAAGATCGAGATACCCGAGGCCGATCTCACGCTGGTCGATGTCCTCGAGAACGACGAAGAAGACGAGGATGTCCAATACGAGCCGAAGCCGAGAAAGCAGAAGaaaaccgccgccagcaagcAGGAAAGCGAGGCTAAGGAAAAGGAGTTGGTGGGCCCGCCGGTGCAAAAGAAATCCGTCGAACTGGACGACTACATCAGGGACAATTTCAAAATCCACTGCCCCCTGTGCAACCGCCAGATGGCCGACTTCAGCGAGCTCCTCGTCCACATGCCCTGCGAGCACAAGCAGCGCGCTTATGTCGTCTGCTGCGGCAAGCGGTTCTTGAAGCGCTGCTACCTCGTCGACCACCTGCGCCACCACAAGGACCCCGAGCTCTTCAAATGCCACATATGCAACCGCGTGATGTCCCTGCGCCGCAGCCTGGAGCTCCATCTCCGCATGCACGAGAGCAAGTCCCGCGGCCGCATCTACAAATGCGACCAGTGCTCCAAGGCCTTCTACAATCCGACGGTCTTCGAGCGCCACAAGCTCACCCACATTCCCAAGGACCAGTGTCAGATTTCCTGCACACACTGTGACAAGACATTCGCCACCAATTACACGATGACGCAGCATGTGAATCATGTCCACCTGAATTTGTACGTGAAGATCTGCGATGTGTGCGGCAAATCGATACGCGGCCGCGAGGCCCTGGCCCGCCACATGGAGGAGCATGCGGGCGGCTCGCAGACCAACATCAAATGCCACTTGTGCGGCTCCACCTTAGCCAACAAATACGGCCTGGCCCGGCACATCAAAATGATGCACACCGCAGAGAACCGCCAGCCCATGCAGTGCTCCATCTGCCAGAAGATCCTGCCCAGCCTGcaggcccaccaccaccatgtCAAGTACACGCACAACACCGCGCGCAAGCACCAGTGCCCCATGTGCGACAAGGCCTTCAAGCGGGCCTACGAACTGAAGGAGCACATGACCACCCACACGGGCGAGGTGCTGTACACCTGCCCGCACTGCCCGAAGACCTTCAACTCGAACGCCAACATGCATGCGCATCGCAAGAAGGCCCACCGCCAGGAGTGGGACGAGTTCCGCAAGCGGCGGCTGGACATGGTGGCCACCAAGGGCCGCAGCGATTCGATTATAGCGGTGAGCGTGAGAAAGACCACCGCCCGGGCAGCTGAGACAGGCAACCCCACGGTGGCCTTGAATGAACCGCCGGCTCAGCTGCTCACCCAGGACCTGGCCCTGATTGTCGATTGA
Protein Sequence: MTCFLCLQPAEGLGGRIEFSSPDADLMDVKKIIEMHFQLRTEDTTDETNCICGLCWEQTLSFHNFYLSVELAHNNALNDIKTELEQFAESPLLDPDPDVVYDPEPEPAIIVESVETTAKRRRGRPRRKPLEIPEATGDIVTTSELKSVLEQINLNEIKIEIPEADLTLVDVLENDEEDEDVQYEPKPRKQKKTAASKQESEAKEKELVGPPVQKKSVELDDYIRDNFKIHCPLCNRQMADFSELLVHMPCEHKQRAYVVCCGKRFLKRCYLVDHLRHHKDPELFKCHICNRVMSLRRSLELHLRMHESKSRGRIYKCDQCSKAFYNPTVFERHKLTHIPKDQCQISCTHCDKTFATNYTMTQHVNHVHLNLYVKICDVCGKSIRGREALARHMEEHAGGSQTNIKCHLCGSTLANKYGLARHIKMMHTAENRQPMQCSICQKILPSLQAHHHHVKYTHNTARKHQCPMCDKAFKRAYELKEHMTTHTGEVLYTCPHCPKTFNSNANMHAHRKKAHRQEWDEFRKRRLDMVATKGRSDSIIAVSVRKTTARAAETGNPTVALNEPPAQLLTQDLALIVD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -