Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: L
Assembly: GCA_037075105.1
Location: JBAMCP010003460.1:969-7216[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.26 32 5.8 6.2 1 23 8 30 8 30 0.97

2 18 2.5 3.2e+02 2.7 5.4 3 23 69 89 68 89 0.96

3 18 1.2e-07 1.6e-05 25.7 3.2 1 23 95 117 95 117 0.99

4 18 9.2e-06 0.0011 19.8 0.4 1 23 123 145 123 145 0.99

5 18 0.0028 0.35 12.0 0.2 2 23 238 260 237 260 0.95

6 18 0.052 6.6 8.0 0.7 1 23 335 357 335 357 0.97

7 18 0.0069 0.87 10.8 0.1 2 23 365 386 364 386 0.91

8 18 0.0085 1.1 10.5 0.1 3 23 396 420 394 420 0.84

9 18 7 8.8e+02 1.3 0.2 2 20 426 444 425 445 0.91

10 18 2.7 3.4e+02 2.6 1.0 2 23 456 478 455 478 0.95

11 18 0.0019 0.23 12.6 1.1 1 23 528 551 528 551 0.97

12 18 1.2 1.5e+02 3.7 0.6 2 23 705 728 704 728 0.89

13 18 0.00073 0.091 13.9 4.6 2 23 737 759 736 759 0.96

14 18 0.03 3.7 8.8 0.1 1 23 765 787 765 787 0.92

15 18 0.0059 0.74 11.0 0.2 2 23 795 816 794 816 0.94

16 18 0.32 41 5.5 1.0 2 23 922 943 922 943 0.94

17 18 0.01 1.3 10.2 0.0 1 23 953 975 953 975 0.96

18 18 0.00023 0.029 15.4 1.9 1 23 982 1004 982 1004 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.26	32	5.8	6.2	1	23	8	30	8	30	0.97
2	18	2.5	3.2e+02	2.7	5.4	3	23	69	89	68	89	0.96
3	18	1.2e-07	1.6e-05	25.7	3.2	1	23	95	117	95	117	0.99
4	18	9.2e-06	0.0011	19.8	0.4	1	23	123	145	123	145	0.99
5	18	0.0028	0.35	12.0	0.2	2	23	238	260	237	260	0.95
6	18	0.052	6.6	8.0	0.7	1	23	335	357	335	357	0.97
7	18	0.0069	0.87	10.8	0.1	2	23	365	386	364	386	0.91
8	18	0.0085	1.1	10.5	0.1	3	23	396	420	394	420	0.84
9	18	7	8.8e+02	1.3	0.2	2	20	426	444	425	445	0.91
10	18	2.7	3.4e+02	2.6	1.0	2	23	456	478	455	478	0.95
11	18	0.0019	0.23	12.6	1.1	1	23	528	551	528	551	0.97
12	18	1.2	1.5e+02	3.7	0.6	2	23	705	728	704	728	0.89
13	18	0.00073	0.091	13.9	4.6	2	23	737	759	736	759	0.96
14	18	0.03	3.7	8.8	0.1	1	23	765	787	765	787	0.92
15	18	0.0059	0.74	11.0	0.2	2	23	795	816	794	816	0.94
16	18	0.32	41	5.5	1.0	2	23	922	943	922	943	0.94
17	18	0.01	1.3	10.2	0.0	1	23	953	975	953	975	0.96
18	18	0.00023	0.029	15.4	1.9	1	23	982	1004	982	1004	0.98

Sequence Information

Coding Sequence: AGCCATGCCGAGCACTTGCCGTTCAAGTGCGAATACTGCGCGAAGCTGTTCAAGCACAAGAGATCCCGAGATCGCCACAAGAAGCTGCACACCAACGAGCGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGAATACTGCGCGAAGCTGTTCAAGCACAAGAGATCCCGAGATCGCCACAAGAAGCTGCACACCAACGAGCGGAACTACAAATGTCCCCACTGCGAGGCGGCCTTTTCCCGAAGCGATCACCTGAAGATCCACATGAAGACCCACGACATCCAGAAGCCCTTCCAGTGCAGCATGTGCAACCGCGGCTACAACACGGCCGCCGCGCTCACCTCGCACATGCAGAAGCACAAGAAGAACGCGGCCAtcctggcggccggcggcaacCCTAATGCTTTGAACTACAGTCCCCGATCCACAGGATCAGCCTCTAGCAATGGCAGTTTGAATAAGCGCCGCTATGCCTTGGCCCTGGCAGCCTCGGCGGAGAGCAGCCCGTCCAGTCGGCTGGATTATCCGAAGCGCGCCCGcagcctggccacgcccacggccaagGCCGAGTTTCAGGGCGTAGAGCAGCCGCCTGCCAAGACGCCCACTGGCGAGGAGGCCAGCGGCTTCCAGCTCAGCTGCGAGTACTGCACGATGAAGTTTGGCAACATTGCGGGTTTGTTCCAGCACATGAGGGCCACCCACATGGACCGGCTGAGCAGCCCGAATTCTTACTACGAGCACTTCAATCGCCTGGCCACCAGCGGCACTTTCAGCCCGCGAGGCCTGGAGAAGATCAAGGCCGACCTGAGCAGCCCGCGGGCCGAGAGcgggccgccggccaagaCGGAGGAAGAGGAGCCCACCGacctcagcagcaacaagcggCAGGGCTCCCCCAAGCAGCCGACCCCCCAGCCGGGCATCTTCTTCTGCAACCAATGCAATGCGGGGCTCCCGGACTTCGAGAGCTTCCGCCAGCACTTGAAGTCCCACATAACCGAGGGACAGCAGCTGGTCTGCCAGCACTGCGGGCTCAGCCTGCCGGACCAGGGCGAGTACGAGCGGCACGTGGTGGGCCATTTCCTGATCACGGGGTCAGAGTTCAATTGCTCAGGCTCCGCGGCTTGCAGCAAGTCCTTTGCCAAGGCCgaggaactgcagcagcatcTCCAGGCCGAGCATGTCCAGACGATCTTGAAGTGCTCGCTATGCTCGGAGCTGTGCGACAACCAAGTGGCCATGCAGCTGCACTTGGCCTGCAGCCACAGCCAGGAGACGAAGCTGATGCGCTGCAGCGCCTGCCTGGAGCTCTTCCGCAGCGAGCCCGAGTTCCATGTCCATGTGAAGACGCGTCACCAGCCTCAGCCCAGCGGAGCAGCAGCCTCCTTAGCGCCCTcggccccagccaccgccccgGCCAATTCCCTGCAGTGCATGTTCTGCCGGGTGGTGTGCTCCTCGGAGCTGGAGATGCACTTCCATTTGGCCGCCCATGCGCGGCAGTTCCGCTGCCCTTCCTGCCCGGAAACCTTCCATGTGGAGTTCCTTTTGGATCGCCACATGCAGAGCcagcacggcggcggcgagccggAGCGCCCGGCCAGCGACAAGGACAGCTACGAGGAGCCGCCCCCGGCCAACCTCAGCCCCATGAACAGTTTGTACGTGAGCGCTTTATTTGGTGGCaagccgccgttgctgcctcCACTGccggccaccaacaacaacagcagcattCTGGACTACAACGTGGCCTTTGCCCAGCTCCAGCATAAAGGACTCTTTGCCCCGCCCGCGGGCGGCAAATTCTACAGTCCTCTCCAAGTGGACACTTCAGGATTGAAGCCGCCCCCTGCCCTCATGTACGGGCTGAGCCAGCGGTACTTTGACACCAACCGCGCGCTGATGGAAATGTATGCTGCCCAGCAGTCGAAGTCCGCGGCCGCCAGCTACTTTGCCCCCAGCCCCAAGCCGGCCGAGCGGGAGAGCCGCCCCGAACCACCCAAAGAgcccgccccggccacgcccggGCTGAGCTGCGGGATGTGCGAGCGCCAGGACTTCCGCAGCGAGGCGGAGCTGCACTCGCACCGCAAGATTGCCCACAACATGAAGACCGGGGTGAGCCTGAGGTGCGCCTATTGCTCGGGCAACTTCAAGTCCAGGAGCGAACTGGAGCACCACATGAAGACCTGCCACAATTCCACGGGGAAGCACAAGTGCCTGATCTGCGATGAGGTCTTCCCCTCGCCGGCCATCCTGGCCGAGCACAAGCTGCAGCACTCGAAGGTGGGCCAGTCCGGCAAGTGCTCCCACTGCGGGAAACCCTTGGCCGATGTCAGCGCCTTCAAGGATCACCTAGGCGAGCATGGGAACAGCAACTCGGGCGCGGGGGCCCTGCCGGTGCAATGCATTTGCTGCCGGCAGACGCTGCACTCGGAGTTCGAGGTCAGCTTGCATGCCAAGTTCCATACAAagtcctgcagcagcttgCAGGAGCCTGTCTGCGCCTTGTGCCTGGAGCCCTTGGCCTCCTCTCCCTCGGAGgccccagccccggccaaGGTCTGCGAAAAGTGCTGCCGCAAGCACAATCTCAATCCCAAGCAGCGCAAGGAGGTGCctccgccaccaccaccacccccagccTCGGTTGGGgccaccccctccccgttTATTGAGAACCGCTGCCACCTGTGCAAGATGATCCTGCCGCATGCGGCCAAGCTCCAGGAGCACCTGGTCGAGCACACCTTCGCGGGCACCGAGGAGCGCGGCTTCAATTGCTACATCTGCTCGGCTGTGTTCACCGCCCCCGGCGGCCTGCTCAGCCACATGGCCGAGCATGGGGCCCAGGCGCGGCCCTATGACTGCAACTTGTGCCCGGAGAAGTTCTACTTCCGGGCGGAGCTGGATCACCACCAAAGGACCCACGAACTGAGGCCAGCCAGGGCCACCAAGCGAGAAGCGAGCCCGGCGCCTCCCCAGGTCAAGCAGGAGGTCTACGAagcggaggcggaggaggccgccccccaggaggaggaggagtacATCGAAGTGGAGCAGATGCCGGCGGACACGCGACCCAACGAACCCCAGGAACGCTCAAGCAGTCGGGCTTGA
Protein Sequence: SHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASSNGSLNKRRYALALAASAESSPSSRLDYPKRARSLATPTAKAEFQGVEQPPAKTPTGEEASGFQLSCEYCTMKFGNIAGLFQHMRATHMDRLSSPNSYYEHFNRLATSGTFSPRGLEKIKADLSSPRAESGPPAKTEEEEPTDLSSNKRQGSPKQPTPQPGIFFCNQCNAGLPDFESFRQHLKSHITEGQQLVCQHCGLSLPDQGEYERHVVGHFLITGSEFNCSGSAACSKSFAKAEELQQHLQAEHVQTILKCSLCSELCDNQVAMQLHLACSHSQETKLMRCSACLELFRSEPEFHVHVKTRHQPQPSGAAASLAPSAPATAPANSLQCMFCRVVCSSELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGGEPERPASDKDSYEEPPPANLSPMNSLYVSALFGGKPPLLPPLPATNNNSSILDYNVAFAQLQHKGLFAPPAGGKFYSPLQVDTSGLKPPPALMYGLSQRYFDTNRALMEMYAAQQSKSAAASYFAPSPKPAERESRPEPPKEPAPATPGLSCGMCERQDFRSEAELHSHRKIAHNMKTGVSLRCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEVFPSPAILAEHKLQHSKVGQSGKCSHCGKPLADVSAFKDHLGEHGNSNSGAGALPVQCICCRQTLHSEFEVSLHAKFHTKSCSSLQEPVCALCLEPLASSPSEAPAPAKVCEKCCRKHNLNPKQRKEVPPPPPPPPASVGATPSPFIENRCHLCKMILPHAAKLQEHLVEHTFAGTEERGFNCYICSAVFTAPGGLLSHMAEHGAQARPYDCNLCPEKFYFRAELDHHQRTHELRPARATKREASPAPPQVKQEVYEAEAEEAAPQEEEEYIEVEQMPADTRPNEPQERSSSRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -