Lsab008928.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- -
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010001844.1:10308-15985[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.19 12.8 0.9 1 23 1281 1304 1281 1304 0.97 2 13 6.5 8.2e+02 1.4 0.2 1 23 1472 1494 1472 1494 0.91 3 13 0.00015 0.018 16.1 2.7 2 23 1497 1518 1497 1518 0.97 4 13 8.3e-05 0.01 16.8 0.3 3 23 1526 1546 1524 1546 0.98 5 13 4.7e-07 5.9e-05 23.9 4.1 2 23 1553 1574 1552 1574 0.97 6 13 4.4 5.6e+02 2.0 0.4 5 23 1587 1605 1585 1605 0.96 7 13 1.1 1.4e+02 3.9 5.4 3 23 1612 1633 1610 1633 0.93 8 13 0.12 15 6.9 0.2 2 23 1644 1664 1643 1664 0.96 9 13 4.5e-05 0.0056 17.7 0.4 1 19 1670 1688 1670 1692 0.95 10 13 4.9e-05 0.0061 17.5 0.5 1 23 1700 1722 1700 1722 0.97 11 13 8.4e-05 0.011 16.8 7.6 1 23 1728 1750 1728 1751 0.96 12 13 0.00016 0.02 15.9 5.9 1 23 1756 1778 1756 1778 0.98 13 13 0.0014 0.17 13.0 6.0 1 23 1784 1806 1784 1807 0.96
Sequence Information
- Coding Sequence
- ATGGGGGAAAGCGTGCAGTGTCCTGTGTGCACGCTGTACTTGCACGCGGGCATGAGCCTGTCCGATCACCTGGACACGCATCCCAAGGAGCAGGTGATCAAGGCCCTCGTCCAGATGACCATTTCGGgcagcggcccggccagcgctttggccgtggccatgctggccggcgaggccaagccgctggctggcgtgGACACCAAGCCGCCGGTGATTGAGGAGAGCCCGGCGGCCAAGCTGAAAGGAGAGGGAGATGAGCTGGCCAGCGGGGCTGGCAAATCCACAAATCCACCGACTAAACACAAATTTGAGGGACTGAAAATcacgccaaccgccgccgcccagtcgaccgccgccacgcccaccaccagctccgcttatcagccgccgccggcaccacCACAGgtccagccacagccacacccacaccaaccacagcagcagccgctggcttCCCTGCCAGTGGGCGACTACCGCTtcgagcagccccagcagcagttccAATTCCAGcggcccgccagcagcgccacttTGGCCTACGCCAGCGGCAGTCTGCTgccagcgcagccgccgcatcATTACCTGGCCCAGCGtcagcaccaccagccgccggcagccaccaGTCACTTCCAGCAGAACGTGAAGTTCGGCTATGCAACTtcgctggcgccgccgccgcccttgcAGCTGTTTGGCCAATTGCtctcgccgtcgccgacgGCGCAgaaccagcaacagcagcagaaccAGCACCAGAAACCCCCACCGGCCTACGGGGCTGCCATCAGTCAAATTCGATCTCAgcacaaccaaaacaaacagcaccagcagcagccgcaccaccaccaccaccacagccaccagctTACGCAAGCCTCGTCGCAGACCCTGACGAGCATAACCATCCACCAGATCCCACCGGGGGCCCCGGTGAGCACGTCGTCGGGTTTGGTCAAGTCCAGCAAGTCGGAGCTGTTCATGAATCCCCCGCCAGTGCCAGCGGGCACGCCGGCCGGCCCGACGCGGCTGCAGTCGCCGTCCTTGCccttggccccgcccaccttcAGCGTGGGCCAAAtgccggccgcccaggccagcggcagtcGCCCGCTGACCAGCCAGGCGCCGGCCGTGCGTTCGAcggccgccagcggctcggccagcagccggcagaccAACTCGCCCTTTGGGGCTTTGCTgacggccgcggctgcggttTGCGCCTCGCCTTCTTCGGTGCTGCGCTATGCGGAGTCGCCGGTGGCCCACTACCTGGAGCGGGAGAACGGCGACTTCATAGTCCAGGAGACGCCCAAGCACATAGTCGAGTGCGTGGAGAAGGAGGACGGCGAGTTCTCGGTGATCGAGCGCATTTACCAATCCCCACCGAGTGTGCTGCGCatccacgacgacgacgaggaggaggacaacgaggaggaggacgacgaaggCCCGGAGAATGAGGCCGCGGCCGAAGCTGAACTTGTAGACGAAGACGGCGACGATGAGCGCGAGgacagccgcagccgcacgcccaccaccaaaaAGCAGCGAGCCTGCAAAACCGGCAAGGCCCGAGGGGCCAGCGGAAAGGCCGGGAAGCCGGGGCAGCGCAGGCGCCACAAGTCGGGGCTCAgccaggacgaggaggagttCATGAGCATCACCAGCGGCTCGGAGCTCGAGGagccccacccgccgcccacggccatAGCCCCGCCCCTCAGCTCGGCCccctccaccagcaacagcgccaccgccaatgCGGCCCAACCGCCTGCGGCAGCCGGGGATGccaattcgaattcgaatacCAGCggctcgagcagcagcaagtcGAAGAAAAACCGGATCACAGTGCTCAGCGATGTGCCGCTGAACATGAACGAGTACCTGGATCTGGTGGGCAACATTGTGGCCTCCAGTCGGATTGGGGCGGCGCGCTCGTTTGCCTCGATGGCGCCCATACCCCAGGTGAAGGTGGAGAAGGAGGAGCCGCTGGACGACTACAACGAAGACCCCGCCGACTATCCGCCCAGCGTGGAGAACGAGCCGCTGGAGGATCTGGAGCAGAAGCCCAgcctggaggagcagctgctcttgcaggccggcggccagagcgccaccaccagcgtgATCCGTCGCGCCAGTAcaaacagccagcagccgtcgtcgctgATGGACAGCAGCCCCGAGGATCTCACCCAGCCGCCGACCATGAAAATCGAAGTGGAGCCCACCAAGCTGATGCCCCAGCGGTTCGCcgacccgccgccggcccgcgGCCCCAAGAAATTAGTCATCAAACCAAAGTCCACTGCGGCGGCAACTAAAAAGACTGACCCCGAGCCCGCGGCCTCCACTTCAACGGCCTCCAGCTCCGTGCAGATCAAGAGCGAGATTCCCGAGCCCCTGCcgccagccaccggcagcatcCTGGAGAAGCATTTGACCGCCACCTACGCCTGTCAGCCGCGCCgcaagctggccagcggcgtcaacgacgacgacgctcgGGTTCTGCTCGAGTTCGCCAACTCcaagcagccgcagctggacggctcggccagcaccaccaccacctttGTGGTGAATGCGGCGGCCACCTTCCCCTCGGCCGGCTCGGTctttgccagcggcagcagcaagcaGAGAACCACTGCTAACGGCGAGGAGTACATCCTGCCCGACAACGACCTCGATGTGGAGGACATTGTGATATCCTCGTCTTCGTCTGGCAGCGCGGCCGCCGGCAAGCCAGGCTCGGCctgccagcagcccagccagcagcaggcgccggCCAACTTCAACGATTTCAACTTTAATCTCTACCAGGCCGCCAGTTCGTCCTCGGCCGGCCTGAAGGTctctgccgccggcggccacatGGACAAGTTCACGCCGTTCagcttccagcagcagcagccgccggccacgcacagcggggccagcgaggccaccaATGCCGCCACcgtggcctcctcctccagttcctcggccagctcgctggccggctcggTGATCCTGGACCACGACTCCATGAACGCCACCTTCCCGGTGGCCGTCAAAGAGCCGCCCACCTCGCGCCAGCCCCCGGCCCTCCCTGCCGGCACTGCCAGTGGCTCTTGGTTCCACCAGCATGACGGCGCCCAGCCCACCAACTTTAATGCCGCCTTGGCGGCCGTCGAGTGCTGCAATGCGGAGAGCGTGGTGACCGACGCCAAGTACTTGGATCTGGATGCCTGCAAGCAGGAGCGgctgagcggcagcagctgcaactcGATTGTCACGGGGACGCACCTGCTCTCGGGCTCGGTGTCGGCCTCGACCACCTCCTCCTCGTttgccgcggccgccaccgAGAGCAGCCTGGTGGGGGCCCTCAACATCCGCACGGACGAGAAGATGCCGCCCAAGGGCGAGATCTCCGAGCAGGAGAGCAACTGCGACATCGAGAACTCCTGGAGCCAATCGGTGTACGGCGGGGACATGTCGCCGCCCTATTTCAGGAACCAGTTCCCCACGGTGGCCTACGGCCACATGCCCAGCTACTATGCCGAGGACCTCAGCCCCCAGCAGCGCGAGTCCAAGCACTTCGACTTCCGCCTGCCCGTggagctggccagcagctcggtgGCAGACTACATGTTCCCCACGCAGCACGACAGCTCCAGCGATGCCCAGCCCAccacctcgtcctcggccctgctggctgggccgccCATAGCCTCGACTTccagggcggccgcggccgcagcggccagcgcAGGCGGCCATCTGGGCACTTTGGAGACCACCttggtgccgctgccgccgcgcaaGCAGCCGCGCCGCAAGATCTACAAATGCCCGCACTGCGAGACGATCTTCGAGAAGCTAAAGGACCGCAATGCCCACATGATCAGCGAGCACAACTACGTGCGCCAGAACCGGCGGCTCATCTGCACCCAGGCGCCcatggtggcggctgccacgtCCACGGTGACCAGCGCAgcggctgggcctggcctgGTCTTAATGGAGGATCCGCTGCTCACCACGCATCCCAGCTGCAGCAGTGCCACTGTCGAGGACTCCAAGGACGGCATAGTCAAGATCAAGCAAGAGCAGGGcctggaccagcagcagctgaggGGCCGCGTGGACAATTTGGACCCGCTGGATGGCAAGTTGGAGCTGCCGGATGTCAAGGatgccgggctgctggccgagccggCCCCGGCCGATGTGAAGCCGCACAATGTCCTGCTGACGGAGCTGGACGAGAAGCCGCAGATTGCCCCGCTGGCCATGACCACGCCGGCGGCCAAGCTGGCTGCCCTCTACCGCATGCTGATTGCCTACAACGAGTCGAAGCTGGGCCAGGACCGGCCCATCAGCGAGCTGGAGAAAAAGGCCATGGAGAAGTCGATCTTCCTGTGCTACGTGTGCCGCACCGACTTCCCCTCGGTGAAGCTGTACGACGCCCACCTGACCGAGCATCCGGCCGAGTGCTTCACCTGCGGCAAGAAGTTCTACCGCTGGAAGAACTTCTCGCTCCACCTCAAGCGGCACTTGGGCTGGAAGGAGTTCGGCTGCTACACCTGCGACAAGAAGTTCGTCGTCCGCAGCGCCCTCGTCGAGCACATGCGCATGCACACCGGCCAGACGCCCCTCAAATGCAAGATTTGCGGCAAGAAGTTCAAGCGGTACTCGAACCTCACGCAGCACCGCAAGCGCCACACCAAGATGATGGTGCGCAAGAAGGAGTATGTGTGCCATTGCGGGGAGGTGCTGCCCTCCAAGGCCCGCTTCCTGTGGCACAAGGAGACGCACGACGTCAAGCCAAAGTGCTGCCCCTACTGCTGCGACCGGTTCGTCCATGCCAACTCGCTGCGCCGCCACATCCGGCTGGCCCACTCGGACAAGTTCGACTACGCCGAGCCCATGGAGTGCCCCATGTGCAAGCAGATCTTTGCCAAGACCTCGATCAAGGCCCACATGGCCACGCACTCGACGGAGCCGCAGTACGACTGCGCCATTTGCAACAAGTCCTTCTCCACCAAATGGAATCTCAAGATCCACTCGTGGGTGCATGCCAACCGCACGGCCAAGCCCTTCAAGTGCGACTACTGCCCCAAGGCCTTTGTGCGCGAGCTGGACTTCAAGAACCACCTGAACGCCCACAAGCAGATCAAGCCGTACACCTGCGAGTATTGCGGTTGCAAGTTCATACGCAAGTACAACTACATGCGGCATCGGCGCGAGCATCACGGCAACAAGAAGTTCACTTGCGATCAGTGCGACAAGTCCTTCCATCGGCATTACTATTTGATCGAGCATAGGCGCATCCACACGGGCGAGCGGCCCTTCCAGTGCACGATCTGCGGCAAGAGCTCCACCACGAAAACGAACCACAACAAGCATCTGAAGATCCACCACTCGCGCGATCCCTTCACCGTCGAGGTGTAA
- Protein Sequence
- MGESVQCPVCTLYLHAGMSLSDHLDTHPKEQVIKALVQMTISGSGPASALAVAMLAGEAKPLAGVDTKPPVIEESPAAKLKGEGDELASGAGKSTNPPTKHKFEGLKITPTAAAQSTAATPTTSSAYQPPPAPPQVQPQPHPHQPQQQPLASLPVGDYRFEQPQQQFQFQRPASSATLAYASGSLLPAQPPHHYLAQRQHHQPPAATSHFQQNVKFGYATSLAPPPPLQLFGQLLSPSPTAQNQQQQQNQHQKPPPAYGAAISQIRSQHNQNKQHQQQPHHHHHHSHQLTQASSQTLTSITIHQIPPGAPVSTSSGLVKSSKSELFMNPPPVPAGTPAGPTRLQSPSLPLAPPTFSVGQMPAAQASGSRPLTSQAPAVRSTAASGSASSRQTNSPFGALLTAAAAVCASPSSVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLRIHDDDEEEDNEEEDDEGPENEAAAEAELVDEDGDDEREDSRSRTPTTKKQRACKTGKARGASGKAGKPGQRRRHKSGLSQDEEEFMSITSGSELEEPHPPPTAIAPPLSSAPSTSNSATANAAQPPAAAGDANSNSNTSGSSSSKSKKNRITVLSDVPLNMNEYLDLVGNIVASSRIGAARSFASMAPIPQVKVEKEEPLDDYNEDPADYPPSVENEPLEDLEQKPSLEEQLLLQAGGQSATTSVIRRASTNSQQPSSLMDSSPEDLTQPPTMKIEVEPTKLMPQRFADPPPARGPKKLVIKPKSTAAATKKTDPEPAASTSTASSSVQIKSEIPEPLPPATGSILEKHLTATYACQPRRKLASGVNDDDARVLLEFANSKQPQLDGSASTTTTFVVNAAATFPSAGSVFASGSSKQRTTANGEEYILPDNDLDVEDIVISSSSSGSAAAGKPGSACQQPSQQQAPANFNDFNFNLYQAASSSSAGLKVSAAGGHMDKFTPFSFQQQQPPATHSGASEATNAATVASSSSSSASSLAGSVILDHDSMNATFPVAVKEPPTSRQPPALPAGTASGSWFHQHDGAQPTNFNAALAAVECCNAESVVTDAKYLDLDACKQERLSGSSCNSIVTGTHLLSGSVSASTTSSSFAAAATESSLVGALNIRTDEKMPPKGEISEQESNCDIENSWSQSVYGGDMSPPYFRNQFPTVAYGHMPSYYAEDLSPQQRESKHFDFRLPVELASSSVADYMFPTQHDSSSDAQPTTSSSALLAGPPIASTSRAAAAAAASAGGHLGTLETTLVPLPPRKQPRRKIYKCPHCETIFEKLKDRNAHMISEHNYVRQNRRLICTQAPMVAAATSTVTSAAAGPGLVLMEDPLLTTHPSCSSATVEDSKDGIVKIKQEQGLDQQQLRGRVDNLDPLDGKLELPDVKDAGLLAEPAPADVKPHNVLLTELDEKPQIAPLAMTTPAAKLAALYRMLIAYNESKLGQDRPISELEKKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYTCDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKMMVRKKEYVCHCGEVLPSKARFLWHKETHDVKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTEPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCDYCPKAFVRELDFKNHLNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -