Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: -
Assembly: GCA_037075105.1
Location: JBAMCP010001376.1:303-3020[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.13 16 6.8 0.3 1 23 170 193 170 193 0.95

2 9 0.59 74 4.7 0.1 2 23 245 267 245 267 0.92

3 9 0.00018 0.023 15.8 5.8 1 23 491 513 491 513 0.97

4 9 0.0012 0.15 13.2 1.2 1 23 519 541 519 541 0.97

5 9 0.011 1.4 10.2 0.6 1 23 547 569 547 569 0.98

6 9 9.9e-08 1.2e-05 26.0 1.3 1 23 575 597 575 597 0.99

7 9 2.2e-06 0.00028 21.8 0.3 1 23 603 625 603 625 0.98

8 9 7.7e-07 9.7e-05 23.2 1.4 2 23 632 653 631 653 0.97

9 9 0.00014 0.018 16.1 0.9 1 23 659 682 659 682 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.13	16	6.8	0.3	1	23	170	193	170	193	0.95
2	9	0.59	74	4.7	0.1	2	23	245	267	245	267	0.92
3	9	0.00018	0.023	15.8	5.8	1	23	491	513	491	513	0.97
4	9	0.0012	0.15	13.2	1.2	1	23	519	541	519	541	0.97
5	9	0.011	1.4	10.2	0.6	1	23	547	569	547	569	0.98
6	9	9.9e-08	1.2e-05	26.0	1.3	1	23	575	597	575	597	0.99
7	9	2.2e-06	0.00028	21.8	0.3	1	23	603	625	603	625	0.98
8	9	7.7e-07	9.7e-05	23.2	1.4	2	23	632	653	631	653	0.97
9	9	0.00014	0.018	16.1	0.9	1	23	659	682	659	682	0.95

Sequence Information

Coding Sequence: ATGCTGAAAAACTCCacagccgtcgccgtcgccgccgtcgcgaAATTGGGCATCAAAAGAAAGACTAAAAAGTCAGTCGCCATGCCAGCAGCGTCGGAGAACGAGACCGAGGAGGAGTCCGATCTGGACACGGTGGAGGCCGTCTTCACCATcgacagcgaggacgaggccgagcTCGAGGCCCAGCGGATTCGCTTAGACGACCTTaaggccgctgctgctgccgctgccggcgtcgccacGCCAGcgtcagcaacaacaaagtcgCAGGTCAGTAATGGAAAAGGTAAACAGCCCCGGCCgaagccgccggcagcagacAAGCGACGTGGACGCGGACGGCCGCCTGgcgtcaccaccaccaccaccaatgCCAGTGGCAAGCGGAAGCCGCGCAAGCACTCAAGCAGttccaccaccggcagcaccaacagccaccacagcagccctggcagctggcagacGTGCGCTCTCATCTACGCGGATGAGAAGTCCCGTCGGTATATTTACagttgccagggctgcacgCTGCACTTCGGGGCTGAGGAGTCCCTGGTGCAGCATTGGCTCAGCCAGCACCGAGGATCGGAGGAGGCCAAGCGGCCGGGCGGCAAACGCGGCAAACCCAAAACCCAACCGAATGCCGAGCTGCCCTTGGAGCTGAACGGCCTGAAGCCAAGCGAGCTGAAGTGCTGGGCCCAAATGCAGGTCAATGCCAAGAGCTTCCAGCGGCAGTGCCGGGTCTGCAATTCGGAGTTTGTGGCGTCGGCCGAGCTGCTGAGTCACCTGACGGCGGAGCATGAACTCTTCAAGTTGGTGGTGCCGAAGGAGGAGTTTGCGGTGGAGCTGCCCAAGCCGCGGGTGATGTCtacgccgccgctggccatggTCAGCATTCCCTGTGCCCTGGGGCTGCACAAGGTGACGGCGGAGGACATTCTGCCCATTCCGGGGCCGgacacgccgccgccggagcagGACGCCAAGGAGGCCAAAAATGATCTCGAAATGCTAAGCTCCCTGGCGGTGGACCTGACGGCAGAGCGCAGCAAGTCCGCGTCGCCGGTCATCAAATTGGCTGCCAGCAAGGACTCTTCAAAAGGCAAAACCCCAAAGCCAAGAACGGAGgaggaggaggagactGCGGCGGGCAAGCGGCCGCGTGTGCAGCCCGCGGAGATCAAGGAGGAGCCGCTGGAGCAGCCCAGCGAGAGGCGCAAGCGCAAGACACGCAACTTCGTGGACTACGTGGTGGACATCaaggacgaagacgacgaggacgacaaggcCGAGATATCCGGCGATTCGGAGAGCTCCTTCCTCAACAGCTCCGCGCCGAATAGCTCCTCCGACAGCAGCAGTCCCTCCACCAAAGGCACCCGCCGCGCCGACTCCATCAAGCGCGAAATCCTCGACGACCTCAAGCGCCATGGCAGCCCGCTCGGCGGCAGCCCCACCAACAGCCTCAAGCACACCTGCAACTTCTGCCAAAAGAGCTTCAAGCGCTTCTCCCGCCTCCAGGACCACCTGCGCCTCCACACCGGCGAGAAGCCCCACGTCTGCGGCCAGTGCGGCCGAGCCTTCCGCCTCAAAATGCGCCTCATGGAGCACCAGTTGCGCCACCGCACTGAAAAGGCCTTCAAGTGCGAGGTCTGCGCTTTGCCCATGGCCACCAAGCAGGACCTCACCCTCCACATGCGCCACCACAAGAACGACCGGCGCTACAAATGCGAGCACTGCCAGAAGGCCTTCGTGCGCAGCTCGGACCTCACCATCCACGTGAGGGTGCACACCGGGGAGAAGCCCTACGACTGCGATCTGTGCGGCAAGGCCTTCCGGGCCCGCCAGAACCTCATTGTCCACCGGCGCACCCACCTCGGCGACAAGCCCATCAAATGCGAGATGTGCGACAAGCGCTTCTCGCGCAAGATCGACATGCGCGTCCACATGCGGCGCCACACAGGGGAGAAGCCGTACAACTGCGAGTCCTGCAAGCGGGGCTACTCGTCGCGGGTGAATCTGCAGCGCCACCAGGTGCGGGAGCATGGCAAGAAGTCCTCTGCCGTCCACAGCGACACGGAGGAGGGCAAGAAAGTGCGCGTCTATCCCTCGCGCCGGGAGCAGCTGAAGCGCTCGGTGGACACCTGGAAGCGCTATCAAAGCCGCGAGAACGGCAAAAAGTCCGCCCCCAGCGATTCCGAAGAAGAACCAACAAaggacgccggcagcggcagcgacagccaaAAGCCGCGGCGGGCGGATCTGGTCAAGACCATAGCCGACCAGGAGCGGCTGCTCTGCGAACTCAGGCGCACTTTGGAGTCCATGCCCAAGGCCTACGAAGAGTCCAGCGGGCGAACCGAGCCGCCCGAGCCAGCCGACGCCGGGGCCGGCTGCCCGCAGCCCGCCCAGCTGTCGGTCACCGTCTCCATGCAAGTGGAGCCGGGCCAGTCCACCGCCGAGCAGATCATCCCCGAGAAGGAGAACGCTTTGAACACCTCGCCGACCCTGGCCGACTCGAGCGGCCCAGGGGGCAAGCACAATAAGACTAATCGCAAGATAACCAGCTACTTCACAGTTgtgggccagcaggccgagatCTAA
Protein Sequence: MLKNSTAVAVAAVAKLGIKRKTKKSVAMPAASENETEEESDLDTVEAVFTIDSEDEAELEAQRIRLDDLKAAAAAAAGVATPASATTKSQVSNGKGKQPRPKPPAADKRRGRGRPPGVTTTTTNASGKRKPRKHSSSSTTGSTNSHHSSPGSWQTCALIYADEKSRRYIYSCQGCTLHFGAEESLVQHWLSQHRGSEEAKRPGGKRGKPKTQPNAELPLELNGLKPSELKCWAQMQVNAKSFQRQCRVCNSEFVASAELLSHLTAEHELFKLVVPKEEFAVELPKPRVMSTPPLAMVSIPCALGLHKVTAEDILPIPGPDTPPPEQDAKEAKNDLEMLSSLAVDLTAERSKSASPVIKLAASKDSSKGKTPKPRTEEEEETAAGKRPRVQPAEIKEEPLEQPSERRKRKTRNFVDYVVDIKDEDDEDDKAEISGDSESSFLNSSAPNSSSDSSSPSTKGTRRADSIKREILDDLKRHGSPLGGSPTNSLKHTCNFCQKSFKRFSRLQDHLRLHTGEKPHVCGQCGRAFRLKMRLMEHQLRHRTEKAFKCEVCALPMATKQDLTLHMRHHKNDRRYKCEHCQKAFVRSSDLTIHVRVHTGEKPYDCDLCGKAFRARQNLIVHRRTHLGDKPIKCEMCDKRFSRKIDMRVHMRRHTGEKPYNCESCKRGYSSRVNLQRHQVREHGKKSSAVHSDTEEGKKVRVYPSRREQLKRSVDTWKRYQSRENGKKSAPSDSEEEPTKDAGSGSDSQKPRRADLVKTIADQERLLCELRRTLESMPKAYEESSGRTEPPEPADAGAGCPQPAQLSVTVSMQVEPGQSTAEQIIPEKENALNTSPTLADSSGPGGKHNKTNRKITSYFTVVGQQAEI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -