Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: RREB1
Assembly: GCA_037075105.1
Location: JBAMCP010000460.1:45308-50396[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0017 0.21 12.7 0.7 1 21 214 234 214 236 0.96

2 12 0.00024 0.03 15.4 0.2 1 23 246 268 246 268 0.98

3 12 1.7e-05 0.0021 19.0 7.5 1 23 274 296 274 296 0.98

4 12 0.07 8.8 7.6 1.2 2 19 462 479 462 479 0.97

5 12 0.0033 0.41 11.8 0.0 1 23 634 656 634 656 0.97

6 12 6.1e-06 0.00077 20.4 1.1 1 23 666 688 666 688 0.99

7 12 0.0006 0.076 14.1 2.0 1 23 694 717 694 717 0.97

8 12 0.0022 0.27 12.4 2.0 1 23 959 982 959 982 0.95

9 12 6.3e-05 0.0079 17.2 0.3 2 23 1286 1307 1285 1307 0.97

10 12 0.11 13 7.1 6.3 1 23 1313 1336 1313 1336 0.97

11 12 0.0061 0.77 11.0 0.5 3 23 1519 1539 1517 1539 0.96

12 12 0.00097 0.12 13.5 4.8 1 23 1545 1567 1545 1567 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0017	0.21	12.7	0.7	1	21	214	234	214	236	0.96
2	12	0.00024	0.03	15.4	0.2	1	23	246	268	246	268	0.98
3	12	1.7e-05	0.0021	19.0	7.5	1	23	274	296	274	296	0.98
4	12	0.07	8.8	7.6	1.2	2	19	462	479	462	479	0.97
5	12	0.0033	0.41	11.8	0.0	1	23	634	656	634	656	0.97
6	12	6.1e-06	0.00077	20.4	1.1	1	23	666	688	666	688	0.99
7	12	0.0006	0.076	14.1	2.0	1	23	694	717	694	717	0.97
8	12	0.0022	0.27	12.4	2.0	1	23	959	982	959	982	0.95
9	12	6.3e-05	0.0079	17.2	0.3	2	23	1286	1307	1285	1307	0.97
10	12	0.11	13	7.1	6.3	1	23	1313	1336	1313	1336	0.97
11	12	0.0061	0.77	11.0	0.5	3	23	1519	1539	1517	1539	0.96
12	12	0.00097	0.12	13.5	4.8	1	23	1545	1567	1545	1567	0.99

Sequence Information

Coding Sequence: atGATtgccacccagcagcagcagcaaccccaAAATCCGccagcccccaaccccctgCCCACCAGCACAGTGGGCCGGGCAGTCTCACCGCCAGGACTCCTAGGCGATGCCATCAAAATGGAGCGACGCGACTCCACCACCTCCGAGTCCTCCCTCGAGCACCTGGACTTGGGCCGCACCCCCAAGAAGATGGGCGGTagcgccggccccgcccagccgcccacctcgACGCCGCTGGCCAACGGCGAGTCCAGGAAACGGAAACTGCGCCAGCCGGTGAAGGAAGCAGGAGcctccgaggacgaggaagaaGCTGCGGCCGAGGACCAGCGGCCGCGCCACAAGCAGCGCCGcccggccaccgccagcatTGTGATGGACGGGGATGCCAACTCGCTGCGCAAAAAGTTCCGCCTCAACCGCAGCTCCGCCcccacagccgccccgcccaccggcggCGCCACCGAGCTCTGCGAGTCAGGCTTCGTCGAAGGACACAGCGGCTATCTGTCCAACCAGTCGGCCGGGGCAGCCCTGCgcgggggcagcagcagcagcggccagaACTCCggctcctcctccccccaagGACACTCCAGCGCGGAGTCAGGCATCGGGGCCGGGGACGAGAACATGAAGTATGTTTGCCCGATTTGCGAGGAGGtcagccccaccccccatgAATTCACGAACCACATTCGCTGCCACAATTACGCCTCCGGGGACACCGAGAACTTCACCTGCCGGATTTGCTCAAAGGTTTTATCGTCTGCCTCGTCGCTGGACCGGCATGTCCTGGTGCACACGGGGGAGCGTCCTTTCAACTGCAAGTACTGCCACTTGACCTTCACCACGAACGGGAACATGCACCGCCACATGCGCACCCacaagcagcaccagcagcagaccCAGCGGCGCCACTCGCAGGCCGGCAAGCCTGGCCAGGcgtccagccagccggcggctcctttgactgcggcggccgctgcccagaGGCTGAATGGCAGCAGTGGGGGTCCTGCGCTGGCCGAGAGCTATGAGAGCGACGCCAGCTGCTCCACGGATCTGTCCAGTGGCCAGAGCCAGgcctccaacaacaacaacaccagccaggccaacaacaaccacgaggAGCTGGGGGAGGAGCTGAAGGAGCCCAAGCAGCGCCGCCTGAAGACCACgataaacaacaacatcatagccagcgaggcggaggacgaggaggaggaggtggccaTCACCAGCACCCCGGACGTGGCCACCTTGCTGGCTGGAGCATCCTCGGACTTGTCGCTCACCTGCCCGGCCTGCAGCGCCAGTGAATTCGAGTCCTTGCCGGCCCTGTGCTCGCATTTGGATGCCGAGCACCCGGAGATCCCGGCCAAGTGTCGGGACTGCGAGGTGGTCTTCCGCACCCACCGGCAGTTCCAGGCGCATCCTTGCACCAACCCAAGGCCGCCCTTGATGGGTCTGAGCTCGTCTCCTCTACACCAAATGGAAAGCGAGGATAAAGAACAGGACTCCGAgccagaggaggaggaggaagagggcGACGAACAGGAGCAGCGGCACACGGACAAGCGGGAGGAGTTCTTCCGTCGTTTGTACCTCAAGGACAAGGCAGCCTCTCTGGGGGGAGCCCCCGTGGTGAGTGGCTTGCTCTCCCCCATCTACGGCCAAGGTCCTGTGGAGGTCAAATTCGAGCCGGATTCGAAGGATTTGGCCGACATCCAGTCAATTTTGAACAtgacctcctcctcgtcggcctcgaACTTCCTGCGCAGCATCGAGCACACGGAGAACACACCCTCCAGCCAGTACAGCCTGGAcggcaaggacgacgaggaggcccaGGATGCCTTCACCTCCGAGTTCCGCAAAATGAAGCTGCGCGGCGAATTCCCCTGCAAACTCTGCCCCGCGGTCTTCCCCAACCTGCGCGCCTTGAAGGGACACAATCGCATCCACCTAAGCAGCTCAGGACCCGCAGGACCCTTCCGCTGCAACATGTGTCCCTACGCCGTCTGCGACCGCGCCGCCCTCACCCGCCACATGCGCACCCACAACGGCGACCGCCCCTACGAGTGCGCCGTCTGCAATTACGCCTTCACCACCAAGGCCAACTGCGAGCGCCACCTGAGGAACCGCCATGGCAAGACCACCCGGGAGGAGGTGAAGCGGGCCATAGTCTACCATCCTGCGGAGGATGCCTCCTGCGACGAGTCGGTGTCGGGCAAGACGGACCTGGGGGAGTTGAGTTTCCGGGCTTCACCGCCGGCCAccccggccgccagcagctcccagCTGAAGTccatgctgctggccgaggcccaaACCACACCCAAGCCTGCGGCTCCCCTCAAGATCCAGGTGAAGAGCCTGGACCAGCTGGTGGAGAAGGAGGCCGCCCCTACCCCGGCCCTGGATCTCAGCATGGATGCCTTGGACCTGAGCAAGAAGCCGGCGCTGCCCGCCAACCCCGAACTCTCCGCGGTGGCTGCCTTGgacttgcagcagcagcagcagcagctccagcagcagcagcagcagctgctcctggcccagcagcagctcttcGCCGGCAGCGATCCGGCCACCCAGTACATGCACCAGCTGCTGAGGAACCTCATGTTCCAGCAGTCCAGCGGGTTCCCCTTCTTCGGCTTCATGCCGCCCAACCCCGGCATGTTCAGCGGAGCGCCCAGCAATCCTCCCGTCCTGGAGCAACCAGTCGCCCCCCTAGACAAGCCGGTGCCTTTGCTGCCGCCTCCTGCGGCTCCTGTGCCTTTGCATTCCGGGCCCGTGAAGATGGTCATTAAAAATGGAGTCCTGATGCCCAAGCAGAAGCAGCGCCGCTACCGCACCGAGCGTCCTTTTGCCTGCGAGCACTGCTCTGCCAGATTTACCCTGCGCTCCAACATGGAGCGCCATGTGAAGCAGCAGCATCCGCAGTTCTATGCCCAGCGGCAGAGGAGCGGCCATCATGTGATGCGCGGCCGTGGAGCCtcagccgcggcggcggcggccgcagcagccgctgctttGGGCCATCAAACTCCTGGAGGGGGGGCAGCCCCCATTTCCGAGCAGGTCAAGTACGCcatcctggcccagcagctgaaaGTGCGCAAGGACACGGATCTCCTGCAGCAGGCCCTGGCCCATGGCTCGAGCAGCGTGGCGGCCAGTCAGCTGCTCCAGTTCAGTGGCTCCCTGGGGGGAGGAGCAGTCGGCCAGGCAGCTCCCCTCAATGCCACGACGGTGGACGATGATGAGCCGAAGTTGGTGAtagacgaggacgagggcgaggaggaggaagaagaagacgaaccagaagaggaggaagaagaggaggaggaggagccggaagaagaggaagaggaggaggaaattCCCTTGGCTGCTCCCTTGCCCCCGATTAAAGAGCCTGCCGAgttgtccttgccgccgccagctccttTGGCGGCCAAGAAAATGGCCGAGACCATCCTCGAGCAGGCCATCAAGGCTGGcaagccagccacgcccactccgcCCACCATGAAGTCCATGATAGCCCAGGCCGAGTCCGTGGCCAAGTCCCTGAAAGAAGTGGCCAGCTCGCCCTTCAAGGACGAATCTCAGGACCTCGTGCCGGTGGCCAAGCTGGTGGACAACGCCACCAGCAACCAAGTGTCCTTCAACACTTACTTCCGTCCCAGCGACGTGGCCAACCACATGGAGCAGAGCGACGAGGAAGGACTCGTCGCCtccggcagcgccagcgagaGCAACAATTCCGGCACCGAGGACGTCACCACCCCCAATGCCGAGCCCAAGAAGAAGTCCGCCTACAGTTTGGCCCCCAATCGCGTGTCCTGTCCTTACTGCCAGCGCATGTTCCCCTGGTCCAGCTCCCTGCGCCGCCACATCCTCACCCACACCGGCCAGAAGCCCTTCAAGTGCAGCCATTGTCCTTTGCTCTTCACCACCAAAAGCAACTGCGATCGCCATCTGCTCAGGAAGCATGGCAATGTGGAGTCCGCCATGTCCGTCTATGTGCCCACGGAGGATGTGAACGAGCCCATTCCCGTGCCCAAGTCCGTGGAGGAgatcgagcagcagcagcgccagcgggagGAGGACGAGCGCCGGCgcaaggccgaggaggccgaggccgcagccagcgcagccgctgctgccgccgccgaggccgaggcggaggcccagcgccagcagaaggagcagctcatccgccagctggcggccgcccatcTCAGCCAGATGagcgctgcggccgcggccgtggcagccgctgccgaggcctcggccggcagcgccgcagccgccgccgatttGCCCTACAAGTGCCACCTGTGCGAAGGATCCTTCGGCGAGCGGTTCCAGTGCCTGGAGCACATCAAGCAGCAGCACTCGCACGAGTTCGCTTTGCTCCTGGCCAAGGGAGCCATTGAATCCGATGTGGCCGAGCCTTTGCCCCCCCAGCAAACCTCCGACGACGAGCAGTCCGCCCGGCCGGGCAAATATCCGGACTACAGCAACCGCAAGGTGATCTGCGCCTTCTGCGTGCGCCGCTTCTGGTCCACCGAGGACCTGCGCCGCCACATGCGCACCCACTCCGGCGAGCGGCCCTTCCAGTGCGAAATCTGCCTGCGCAAGTTCACCCTGAAGCACTCGATGCTCCGGCACATGAAGAAGCAcagcgggcggctggccaacggcggcggcggcacaggATCCGAGCATGGCGGCTCCGACTGCTCGGACGACGAGCAGTCCTCCTCCACGCCCCCGCCAGCTTTGACGCCCACGGCGGGCAGCCTGGTCAATGGGCTGGGCAAGTTGGGCGGACGACCGCCGAAGCTCCACGAGCTGCTGGACAAGGCCAACGAGTGGCGGGCCAGTCGCCTGGGGGAGGTGGCGGGGGGCAGCGATTTGATTGGCAATCTGCTGGGCATCAGTGACCAGGGGATCCTGAACAAGCTGCTGTCCTCGCCGGATGAGGCGGCCAAGCTGCTGGGGGTGGAGAAATAA
Protein Sequence: MIATQQQQQPQNPPAPNPLPTSTVGRAVSPPGLLGDAIKMERRDSTTSESSLEHLDLGRTPKKMGGSAGPAQPPTSTPLANGESRKRKLRQPVKEAGASEDEEEAAAEDQRPRHKQRRPATASIVMDGDANSLRKKFRLNRSSAPTAAPPTGGATELCESGFVEGHSGYLSNQSAGAALRGGSSSSGQNSGSSSPQGHSSAESGIGAGDENMKYVCPICEEVSPTPHEFTNHIRCHNYASGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQQQTQRRHSQAGKPGQASSQPAAPLTAAAAAQRLNGSSGGPALAESYESDASCSTDLSSGQSQASNNNNTSQANNNHEELGEELKEPKQRRLKTTINNNIIASEAEDEEEEVAITSTPDVATLLAGASSDLSLTCPACSASEFESLPALCSHLDAEHPEIPAKCRDCEVVFRTHRQFQAHPCTNPRPPLMGLSSSPLHQMESEDKEQDSEPEEEEEEGDEQEQRHTDKREEFFRRLYLKDKAASLGGAPVVSGLLSPIYGQGPVEVKFEPDSKDLADIQSILNMTSSSSASNFLRSIEHTENTPSSQYSLDGKDDEEAQDAFTSEFRKMKLRGEFPCKLCPAVFPNLRALKGHNRIHLSSSGPAGPFRCNMCPYAVCDRAALTRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTTREEVKRAIVYHPAEDASCDESVSGKTDLGELSFRASPPATPAASSSQLKSMLLAEAQTTPKPAAPLKIQVKSLDQLVEKEAAPTPALDLSMDALDLSKKPALPANPELSAVAALDLQQQQQQLQQQQQQLLLAQQQLFAGSDPATQYMHQLLRNLMFQQSSGFPFFGFMPPNPGMFSGAPSNPPVLEQPVAPLDKPVPLLPPPAAPVPLHSGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRGASAAAAAAAAAAALGHQTPGGGAAPISEQVKYAILAQQLKVRKDTDLLQQALAHGSSSVAASQLLQFSGSLGGGAVGQAAPLNATTVDDDEPKLVIDEDEGEEEEEEDEPEEEEEEEEEEPEEEEEEEEIPLAAPLPPIKEPAELSLPPPAPLAAKKMAETILEQAIKAGKPATPTPPTMKSMIAQAESVAKSLKEVASSPFKDESQDLVPVAKLVDNATSNQVSFNTYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTTPNAEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVNEPIPVPKSVEEIEQQQRQREEDERRRKAEEAEAAASAAAAAAAEAEAEAQRQQKEQLIRQLAAAHLSQMSAAAAAVAAAAEASAGSAAAAADLPYKCHLCEGSFGERFQCLEHIKQQHSHEFALLLAKGAIESDVAEPLPPQQTSDDEQSARPGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCEICLRKFTLKHSMLRHMKKHSGRLANGGGGTGSEHGGSDCSDDEQSSSTPPPALTPTAGSLVNGLGKLGGRPPKLHELLDKANEWRASRLGEVAGGSDLIGNLLGISDQGILNKLLSSPDEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -