Lsab007549.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- -
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010001335.1:14773-16196[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.012 1.5 10.0 0.7 1 19 85 103 85 105 0.86 2 8 6.8e-05 0.0085 17.1 6.1 1 23 114 136 114 136 0.98 3 8 8.1e-06 0.001 20.0 3.0 1 23 144 166 144 166 0.99 4 8 6.8e-05 0.0086 17.1 1.7 1 23 171 193 171 193 0.97 5 8 3.5e-06 0.00044 21.1 3.6 1 23 200 222 200 222 0.98 6 8 2e-06 0.00025 21.9 3.5 1 23 229 251 229 251 0.98 7 8 9.5e-07 0.00012 22.9 0.1 1 23 257 279 257 279 0.97 8 8 0.00043 0.054 14.6 0.5 1 23 285 308 285 308 0.97
Sequence Information
- Coding Sequence
- ATGAGCACCTGCCCCCGCTGCCAGAGCACTGCCACTGGCCAGAACCGCCTAGTCACCGAAGCCTGCGGCCACCAAAAATGTCGCCTCTGCCTGCTCGAGGACGTCACCGGCTGCCTGGAATGCTCGGCCGCCGACTCTCCCCCCGTCGAGCAAATAGAGATCCAAAACATCGAGATCCTGCCGCCCGCCATCCTcgaccccgcccccgcctctaACCCCAGCCAGTCCCACATAATCGTCACCCAGGATGGCTACCTGTGCACGGTGTGCAACAGGTCCTTCCGCAGCCGCACCCAGCAGTATTACCACCTCGGCTGTGGCAACGAGCAGCACAAGAAGTTTAAATGCACACAGTGCACCAGGCGCTTTGCCACGCGCTATCATCTGCGTTATCATCTGAACAACCACGGCCTGGGCAGCCGGACGAGCTATGAGTGCTCCGTGTGCCACAAGAAGTTCAAGCAGGAGACCATCCTGCAGCGTCATATGAGGATACACAAGAACGAGCGCTTTAAGTGCGAGCATTGCGAGAGGGAATTCCGCAGCCGCAATTCCTACCGCGCCCATGCGGCCGTCCACAGCGGCCAGGAGCTGCCCCACAAATGTGATAACTGCGGCAAAAGCTATTTAACCAAAGCCAACCTAAAGCAGCACCAGCGCACCCACGACCAGAACAGCCCGCGCCACAAATGCAGCGTCTGCCAAAAGTCCTTTGTACGCCTCTCCAGCCTCACCCTCCACCTGAAGCGGCACAACAAACGCGAGCGCTTCCCCTGCGGCCTCTGCCCCAAAAGCTTCACCGACCCCGACGCCCTCGCCCGCCACACCAAGCAGCACACAGCCTGCGACAAATACCGCTGCGTCGAGTGCAGCATCACCGTCAATCGGCGGGACAATATGTACCGCCACCTGAGGGCCATGCATCCCGGCGTGGGCTTCAATTCGGGCGTGGAGATCATCAGTGCCAAGTCAGAGGATCCTGCGAAACTCACGGCTGAGTCGGCCGTCCGCTACAGCAGCGTCATCAAGTGCGTGGGCAACGTGGAGCCGGTGAAGTTGCCCCTGTCAGAGGAGGCCGAAAAGCCAGCGGAGGTGGAAATGCCGGTGACCCCCACGCAGGCCCATAAGCCCAGTGAGATCCGCAAGGAGAACGTGAAGTTGTACAGGAAAATCATCCTGGATCTGGACAACGAGGAGTACTCGAATGAGACTGCCTCGCTGGATCTGGAGGCCGACCGCGAGGGCCTCATGGCCGAGGTGAATTCGATCCAGCAGAAccgccaggccggccacgCCATCGCCTCCAATTTCACCGAGATGCACTGGcgcaagaatttcaaatattcctaCGAAAACGAGCACTTCAACTGA
- Protein Sequence
- MSTCPRCQSTATGQNRLVTEACGHQKCRLCLLEDVTGCLECSAADSPPVEQIEIQNIEILPPAILDPAPASNPSQSHIIVTQDGYLCTVCNRSFRSRTQQYYHLGCGNEQHKKFKCTQCTRRFATRYHLRYHLNNHGLGSRTSYECSVCHKKFKQETILQRHMRIHKNERFKCEHCEREFRSRNSYRAHAAVHSGQELPHKCDNCGKSYLTKANLKQHQRTHDQNSPRHKCSVCQKSFVRLSSLTLHLKRHNKRERFPCGLCPKSFTDPDALARHTKQHTACDKYRCVECSITVNRRDNMYRHLRAMHPGVGFNSGVEIISAKSEDPAKLTAESAVRYSSVIKCVGNVEPVKLPLSEEAEKPAEVEMPVTPTQAHKPSEIRKENVKLYRKIILDLDNEEYSNETASLDLEADREGLMAEVNSIQQNRQAGHAIASNFTEMHWRKNFKYSYENEHFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -