Lsab005646.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- -
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010000844.1:9666-12394[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.6 2e+02 3.4 0.2 3 23 30 50 29 50 0.93 2 15 0.00045 0.056 14.5 0.9 1 23 56 79 56 79 0.95 3 15 0.00045 0.057 14.5 0.3 1 21 89 109 89 110 0.94 4 15 0.004 0.5 11.5 0.3 1 23 118 141 118 141 0.95 5 15 3.1e-05 0.0039 18.2 3.1 1 23 147 169 147 169 0.97 6 15 0.00012 0.015 16.3 4.2 1 23 175 197 175 197 0.96 7 15 0.23 29 6.0 2.0 2 23 461 483 460 483 0.95 8 15 0.0084 1.1 10.5 3.0 1 23 508 530 508 530 0.98 9 15 0.05 6.3 8.1 2.4 1 23 538 562 538 562 0.95 10 15 0.14 17 6.7 2.7 2 23 567 589 566 589 0.94 11 15 0.00028 0.035 15.2 0.2 2 21 602 621 601 622 0.93 12 15 0.0038 0.47 11.6 0.3 1 23 630 652 630 652 0.97 13 15 3.1e-06 0.00039 21.3 2.8 1 23 658 681 658 681 0.98 14 15 3.4e-05 0.0043 18.0 1.4 1 23 687 709 687 709 0.98 15 15 0.00032 0.04 15.0 2.9 1 23 715 737 715 737 0.95
Sequence Information
- Coding Sequence
- ATGGGTGACGCCAACACCGCACccagcggctccagcggcACCAGCATGATGGTCCAGCTCACCACAGACGGCGTGCCCAAGCTACTGTGTCCTGTGTGCAATAAGGCTCTGTTGTCCCTCACCAGCTACGTTTTGCATGTGAAGAAGCACGAGCCGCCGGGCGGATTCGCCTGCCGGCAGTGCGAGGCCCGCTTCTGCCAGGCGTCGGAACTCCAGGACCACATCTCCTCCAGCCATGGCCAATTGGAGGCTGGCGGCCACAAGTTCAGCTGCGAGAAGTGCGGCGTGGAGTACAAAACCTCGGTGGCTTTTAAGCGCCACCAGGACACGGACTGTGGGCTCCGCCGGCCCTTCAAGTGCGACGCCTGCGATCTCAGCTTTGCCATCAAGTACAGCCTGGCCCAGCACAAGCAGCAGGTGCACGAGGGCGAGCGGCAGTTCTGCTGCAGCTTCTGCGGCAAGAGCTTCGCCCAGAAGCAGAAGCTCATGGAGCACGAGCGCGTCCACACCGGCGAGAAGCCCTTCAAGTGCGAGGTCTGCGAGAAGTGCTTCAGCCACCGCGAGAGCCTCGTCACACATTCCTCGGTGCACACGGGCGTGCGGCTGGTGGAATGCCAGTGCTGCTCCAGTCGCTTCTCCTGCCACTCGAACCTCATCAAGCATCGGCGGCGAAGGCCCGAATCCTGCGGCCTGCCGGCCTACGATCCGCCCAAGTCGCGGGTACGAAGGAATGGGGCGAGGATGGCCGAGAGTCCCTTAAAAAAGTCCTGGAAGAAGCGAGCGAGCGGcgtggcctcggccagcagtgATGAGTTCGTCTCGAATCCCAGCTGCTCGGACAGCGACGACGAtgtgccgctggccagccgcctaAGCCGGCCACTCAAGCAGGAATCCCCCGCCCGCAATTTCTCGGACTCGGAAGAGGATTACCCAGACTTCGAGCCGGGGGAGGatggggaagaagaagacttcAAACTGCCAGCGCCCACGCTGGTGAAAGAGGAGCCCGAGTGCAAGATAAAAGACGAGGCCAGCGATGTTTTGTTTCTGGAAAAGGACAAACTGCTGGACGTGCTGCTGaccaccgacgaggaggccgtggTGGCCACTGGCAGCCCCAAGCCCTTCGAGAGTCTGAAAGTCGAGCAAGCCAGTGGAATTCTAGACGAGATTCCAGGCGTTTCGCTGGGCGAGCGGGAAGAGCAGCAGCCCGAAGAAGACATGCTGGCCATCGAGGAGGACCACCACAAAGCCCAGGCCAAGCGGAAATACCAAAAGCGCTCAAAGGCCGACGGCAGCTCCAAGCGCGGGGCCAGGCTGACCAAAAAAGAGCTCAACGAGCGTCTGAAGATGTTGAACAAAATGGACAAGACCTGGAAATGCCCGCACTGCGTGAAGATCTACCACATCCGCAAGCCCTACGAGAAGCACCTGCGCGAGGACCACAACGAGCCCGAGGCCAAGATCAAGGAGATCTTCGCTGATCTGGACTTCCAGCCGCGCCTCGAGGACGGCGTCTTCAAGTGCCACATCTGCAGCAAAATCTACTTGGTGAAGAAGCGCCTGGAGACCCACATGAAGGTCCatggcagcgacggcagcctGACCCACAAATGTCCTTGCTACTGCAATTTGTTCTTTGCCACGAAAGAGGACGCCACCGGGCATGCCCGGCAGGAGCACAAGGAGCTGCTGTACTGCGAGAAGTGCGACAAGTTCATGACCGGCCACGACAGCCTGAAGAACCACGAGAAGAACTTCCATGCCAAGAAGGAGCTGCGCAATCCCCAGCGCAACCTCATCTGCGACAAGTGCGGCAAGAAGTTCAGCGGCCGCACTTCGCTGTCCGATCACGTGAGGTCGGATTGTGGGCGCCTGCCGCTCTACCAGTGCTCTGTGTGCCAGAAGCGGCTGTCCACCGCGGGCATTCTGAAGACCCACCTGCTGCTCCACAAGGAGGAGACGCCCTACCAGTGCGACAAGTGCGGCAAGACCTTCAAGATCAAGGCCCAGTACAAGTCGCACTTGAAGACCCGCCACACCGACTTCAAGCCCTACAAGTGCCACCTTTGCCCCAAGGAGTATCCGTACCGGGAGAGCCTGCTGACCCACATGACCGTGCACACGGGCATCAAGCGTTTTCTGTGCAACAACTGCGGCAAGCGGTTCACCTGCATTTCCAACCTGCAGGCCCATCGGAAGGTGCATGCCGAGACCTgcgggcagctgccgctgaacGCCAAGGCCACGCAGTACATGGGCGTGCAGCGGGGCAAGCTGCTGATGGGGGCCAAGCCGGAGGCCGGCATGGAGTACGCGGAGACCAAGACTCTGGTGGCCGAGGAGGTCATCGACAAGGACATGCCGATGGCCAAGGCCTTGAACTTTCCCTCGGATCCGTCGGCCCCGCTGGCCACGGTGCCCCTGAACTACGCCTCCTCGCATTTAGTGCCGCACATTGTGCTGCAGACCATCCAGGCCGAGGCAGCCCAGGCCAAGAAGTAG
- Protein Sequence
- MGDANTAPSGSSGTSMMVQLTTDGVPKLLCPVCNKALLSLTSYVLHVKKHEPPGGFACRQCEARFCQASELQDHISSSHGQLEAGGHKFSCEKCGVEYKTSVAFKRHQDTDCGLRRPFKCDACDLSFAIKYSLAQHKQQVHEGERQFCCSFCGKSFAQKQKLMEHERVHTGEKPFKCEVCEKCFSHRESLVTHSSVHTGVRLVECQCCSSRFSCHSNLIKHRRRRPESCGLPAYDPPKSRVRRNGARMAESPLKKSWKKRASGVASASSDEFVSNPSCSDSDDDVPLASRLSRPLKQESPARNFSDSEEDYPDFEPGEDGEEEDFKLPAPTLVKEEPECKIKDEASDVLFLEKDKLLDVLLTTDEEAVVATGSPKPFESLKVEQASGILDEIPGVSLGEREEQQPEEDMLAIEEDHHKAQAKRKYQKRSKADGSSKRGARLTKKELNERLKMLNKMDKTWKCPHCVKIYHIRKPYEKHLREDHNEPEAKIKEIFADLDFQPRLEDGVFKCHICSKIYLVKKRLETHMKVHGSDGSLTHKCPCYCNLFFATKEDATGHARQEHKELLYCEKCDKFMTGHDSLKNHEKNFHAKKELRNPQRNLICDKCGKKFSGRTSLSDHVRSDCGRLPLYQCSVCQKRLSTAGILKTHLLLHKEETPYQCDKCGKTFKIKAQYKSHLKTRHTDFKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHAETCGQLPLNAKATQYMGVQRGKLLMGAKPEAGMEYAETKTLVAEEVIDKDMPMAKALNFPSDPSAPLATVPLNYASSHLVPHIVLQTIQAEAAQAKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -