Lsab005328.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- ken1
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010000774.1:16972-19404[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0025 0.31 12.2 1.2 3 23 260 280 258 280 0.97 2 12 0.0025 0.31 12.2 0.7 1 23 286 311 286 311 0.92 3 12 0.0018 0.22 12.6 1.2 1 23 318 343 318 343 0.96 4 12 0.00016 0.02 15.9 2.1 1 23 355 377 355 377 0.98 5 12 1.6e-06 0.0002 22.2 0.1 1 23 384 406 384 406 0.98 6 12 0.013 1.6 9.9 0.4 1 23 412 434 412 434 0.97 7 12 0.00055 0.068 14.3 4.0 1 23 440 463 440 463 0.98 8 12 0.0044 0.56 11.4 2.7 1 23 469 491 469 491 0.96 9 12 0.00017 0.022 15.8 0.6 2 23 498 519 497 519 0.97 10 12 9.7e-05 0.012 16.6 0.2 1 23 622 645 622 645 0.95 11 12 0.083 10 7.4 1.3 1 21 651 670 651 673 0.75 12 12 1.5e-05 0.0019 19.2 3.0 1 23 679 701 679 701 0.98
Sequence Information
- Coding Sequence
- ATGAATATTGGAGGACAGTTCTCCATACACTCATTATGCCGCATCTGTTTGAATCACCTGCAGAACGATGCGGCTTACGACCTATTTCTTGTGCCTGGCTTGGCAAAGAAATTGTGTTTGTGTACTTCATTGTCGGTAGAGCAGCAGGACGGGTTTCCCAAAAACCTGTGCTCACTGTGCTACACCCGACTGAACGACATGCACGACTTTCAGAAGCTGTGCGTGGACTCGGTGCAGAGGTTCCAGGATATAATGGCCACCAATAGCTTTGCAAACTTTGATATATTAGATCCCAATGTAGATATGGTCGCAGAAGAAGAGGACGATTTAAACTATGATCCTCTTTTAAACCACAAAATGGAACTCATTGAAACGGAGGAGGATGTGTTTAAGATGCTGGAAAACGTAGACAAGGAGGCTGAAAAGGTGGAGCAGGAAGTTAAGAAAGCAGAGCAAACCGAGGCCGATGCTGTTCTCAAAATGTTCGACGAAACCTCGTCCATAGAAAGCGGTAATGACAACGATCTCGATGGAGACTTTGAGCCCAATAGCGAAAGCGACGACGATCTTCCCCTTGCACGTCACTTGCGGGGAAAAACCGCGACCGCAACCAAACCTGCCACAAGAAGGAAGAGGGCAGCTCCAAaagacgatgatgacgataaATCCGATTACGACAGCAGCTCAGATTCAGATTCTGAAAGTGAAAAACCCAAGGAGAAACCCAAACGAAAGCGCATTCCAGCCACTGAGCGCCACCTCCACCGTCTCATCGACTGTCACATATGTCCCCAGAAGTTTAAAAAAGCCATTCGCTATGAGGAACACATGAAGTACCACAACGATCTCTTACCCTTTCAGTGCACCGTTGAGACCTGTAAAAAGGGTTTCACCACTGCCAACGGGCTGCGGCTCCACGTCGACCACGCTCATTCCGAACTTGCCGAGGTTCACACCTGCACTGTAGAAGGCTGCGGTAAAACATTCCCGCGCATACGCCTACTTACCTTCCACATGAAGAAGGTTCACAATATCTCCAAGGCAGCAGCACCTCCACGGGACTACCCCTGCACTGAATGCGATACAGTGTTCcgctgtccaactgccttAAAGAAGCACATGTACAAACATGACGGAAAGGAGCTCCCCTACCCGTGCAATATTTGCGGCAAGCGTTTTGTCATAAACAGCGCCCTCAGGGATCATCTCATGCGACACGCTGGTATAAAGAATCACGTGTGCCCCTACTGTGGCGTGGGCAAGACAACTCGGCAGGAGTGGAACCAGCACATTTTGACCCACACTCAGGAGAAAAAGTACAAGTGCACGAAGTGCGATCACGCCTCCCACAACAAGCAAAGTCTCACGAACCATATCCGAGTGGTGCACGAAAAGATTAAAAACTACGCTTGTCAATACTGCGGAAAAACGTTTGGCAAGTCGTACGCCTGCAAGATTCACGAGAAGAGCCACACCGGGGAGAAGTGCTCCGAGTGCAAGATTTGTGGAAAAGTACTTTTGACTGCAAAAAGTCTAACGAAGCATTTAAAGACACACGAAAAGCGGGCTATACCGCCTCCGCCGAAGGCTGACGCTGCAGGTATCAAGAAGGAGAAACCCCATCCAGCGGCCCAGCCTGCAATTGAAGGCAGCGACCAGTTGAATCCCACGAATGAGCTGTTTAAAGCACCCGGCGACCCAGCTGCCGGTGCAGCTGCGGCATCAAAATCGAAACCAAAGATCTCAAGACGGGTACAGCGTGTCGACATATCGCAATTGGCTGGCACATCAGTTAACCCCATACCTTCGGTAAATCTGCCGTCCTGGTCACCGCAGACTAACTTTACCAAAAAGGAAGGTCAGCACATTTGCCCTGGCTGTGGACGTGGCTTCAATAATATTGGCAACATGAAACTCCACTACAAGATCATACATGAAAAAGTCAAAGATTTCGCATGCCGTTTCTGTCCTAAGCGCTTCTCGAAGGCTCAAATATTGCGCCACCACGAATGGATCCACACAGGAGAAAAGCCCTTCGAGTGCAAGATTTGCTTGCACAAGTTCCGTCAGGAGACCGCGCTGAAGAAGCACATGAGAGTACACGAGGAAAACAGGCCGGTACGAGTCCGGGGAGGCGGTCGTAGTAAGGCTCCAAAGGAGCCGAAGAATCCTACGAATCGTACCAATCGCACGCTAATGGATCCGGCCGAGGAGAGAGCGGCGGCTTCTGCCGAGCTCCAGGCCCAGCAGATGgaggaaaacgaaaacaagcgTCGAGCCCAgttagaaaaggaaaagattcAGCAGGCAGCCTGTGAGCAGTTGCAGAACCTTCCTCGAATACAGCCGCAGTCCTCTTACGACGACTATTTCCAACAGAAGGCGGAAGCTGAAGGGTTCAGTCTCGATGCGTTCAAGCTAGATCATGTATAA
- Protein Sequence
- MNIGGQFSIHSLCRICLNHLQNDAAYDLFLVPGLAKKLCLCTSLSVEQQDGFPKNLCSLCYTRLNDMHDFQKLCVDSVQRFQDIMATNSFANFDILDPNVDMVAEEEDDLNYDPLLNHKMELIETEEDVFKMLENVDKEAEKVEQEVKKAEQTEADAVLKMFDETSSIESGNDNDLDGDFEPNSESDDDLPLARHLRGKTATATKPATRRKRAAPKDDDDDKSDYDSSSDSDSESEKPKEKPKRKRIPATERHLHRLIDCHICPQKFKKAIRYEEHMKYHNDLLPFQCTVETCKKGFTTANGLRLHVDHAHSELAEVHTCTVEGCGKTFPRIRLLTFHMKKVHNISKAAAPPRDYPCTECDTVFRCPTALKKHMYKHDGKELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKTTRQEWNQHILTHTQEKKYKCTKCDHASHNKQSLTNHIRVVHEKIKNYACQYCGKTFGKSYACKIHEKSHTGEKCSECKICGKVLLTAKSLTKHLKTHEKRAIPPPPKADAAGIKKEKPHPAAQPAIEGSDQLNPTNELFKAPGDPAAGAAAASKSKPKISRRVQRVDISQLAGTSVNPIPSVNLPSWSPQTNFTKKEGQHICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEWIHTGEKPFECKICLHKFRQETALKKHMRVHEENRPVRVRGGGRSKAPKEPKNPTNRTNRTLMDPAEERAAASAELQAQQMEENENKRRAQLEKEKIQQAACEQLQNLPRIQPQSSYDDYFQQKAEAEGFSLDAFKLDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -