Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: -
Assembly: GCA_037075105.1
Location: JBAMCP010000293.1:54111-57714[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 6.3e-05 0.0079 17.2 1.6 1 23 327 349 327 349 0.93

2 9 1.6e-08 1.9e-06 28.6 2.6 1 23 355 377 355 377 0.98

3 9 6.4e-06 0.00081 20.3 0.8 1 23 383 405 383 405 0.98

4 9 4.6e-06 0.00058 20.8 1.0 1 23 411 433 411 433 0.97

5 9 2.3e-05 0.0028 18.6 1.4 2 23 524 545 523 545 0.96

6 9 2.4e-09 3e-07 31.1 1.6 1 23 551 573 551 573 0.98

7 9 0.0029 0.37 12.0 0.9 3 23 581 601 579 601 0.97

8 9 0.00012 0.015 16.3 0.8 1 23 607 629 607 629 0.99

9 9 0.013 1.6 9.9 1.1 1 23 636 660 636 660 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	6.3e-05	0.0079	17.2	1.6	1	23	327	349	327	349	0.93
2	9	1.6e-08	1.9e-06	28.6	2.6	1	23	355	377	355	377	0.98
3	9	6.4e-06	0.00081	20.3	0.8	1	23	383	405	383	405	0.98
4	9	4.6e-06	0.00058	20.8	1.0	1	23	411	433	411	433	0.97
5	9	2.3e-05	0.0028	18.6	1.4	2	23	524	545	523	545	0.96
6	9	2.4e-09	3e-07	31.1	1.6	1	23	551	573	551	573	0.98
7	9	0.0029	0.37	12.0	0.9	3	23	581	601	579	601	0.97
8	9	0.00012	0.015	16.3	0.8	1	23	607	629	607	629	0.99
9	9	0.013	1.6	9.9	1.1	1	23	636	660	636	660	0.95

Sequence Information

Coding Sequence: ATGGCCATAAACTTTTCCGCCTCCTTTGCGGCCTGCATAGCCGCTGGTCTCAAAGTGCCGCGCCAAATAATGTACTGCATTACGCAGGACACGGGCCAGCCGTACGTCCTCTACAAGGACTCACAGGACGCCGAGCGCAATGCGGGTGCAATTGGTGCCAGCGCCGCGCAATGGGGCAGCGAAATGTACCCAGGCATTCaacagcaggcccagcaacatctgacggcccagcagcagcagcagcagaacgcAACAGTCGCGGCgcaggccgccgcggccgcagccgccgtccaggggcagcaacagcagccgcagagtCCGCCGGGCGGGGAGCCCGGTGGCCGGGAAAACGGCAGTGGCGATggtcgccagcagcaggtgtCGCCCTCCTCGAGTCCCTATCCATCcgttcagcagcagcagcagcagcagcaaagggCCAACGGCGGGGCCGATGAGGACGCCATGAACCAGCTTGCCAATCAGCAGAACTCCGCGCCAAATCCAAACCAAAGCAGCAATGACCCTCAGCACCCGGCTGGGGACACGGGGAACCCGCATGTCCAGCAGAAcggcggccaggcccaggGAGAGCCGACCAACAACTTCCAGACGCCCGACTACTATGCCCCGCGCCATGCAGCCGCCCAGGGCGGCATGCTGGCTCCGCCAGGCTTCCCACCGCTTCACTATCTCAACAAAGGCGTCCTGCCCATGGAGCAAAACGGAGGCTCCGGCCTAGAGACTTACGCCCTGCCCGagctgctgcctggccagcagaACGGCACCGGTGCGGGTGGCCAGCAGAACGGCGCCGGCAGTCACGGAGCTGCCAATGGCAACACCGTCCAGCCCAATCCCGTAGCGTCGAGCGATGGAGCGCCAACCGCCAACGGCACCGGGACCACCACCGGCTCCGGTCGCGCCAACGGACCCGGCCGTccgcacaaaaacaaaccgcacAGCGATCTGCGTCTGTTCAAATGTCTCACCTGCGGCAAAGACTTCAAGCAGAAGAGCACTCTGCTGCAGCACGATCGCATCCACACGGACGCGCGGCCGTTTCCGTGCTCCGAGTGCGGCAAACGCTTCCGCCAGCAGTCCCATCTGACGCAGCATCTGCGCATCCATGCCAATGAAAAGCCGTTTACATGCCCGTACTGCTCGCGCAGCTTCCGGCAGCGGGCCATACTCAACCAGCACATACGCATCCATTCGGGTGAGAAGCCCTTCGCGTGCCCAGAGTGCGGCAAGCACTTTCGCCAGAAGGCCATCCTCAATCAACATGTGCGCACCCACCAAGATGTCTCCCCGCACCTCATCTTCAAGAACGGGCCACATCCGACTCTCTGGCCATCGGATGTACCGTTTCCCGGCGATGAGACCGACACCAAGGGCGACattgccggcggcagtggctaccacgacgacgactcgcAGGGCACACCGGACGGCAGTGGCGGCATGCATTATCCATCCTACTTCAAGGACGGCAAGGCAGGCCAAAAGATCCTGCCTGATGTGCTGCAGCACATCGGCGTGCGGCCGGCCAATATGCCACTCTACGTGCGCTGCCCCATCTGCGACAAGGAGTTCAAGCAGAAGACCACGCTGCTCCAGCACGGCTGCATCCACATCGAGTCGCGACCCTATCCGTGTCCGGAGTGCGGCAAGCGCTTCCGCCAGCAGTCGCACCTCACGCAGCACCTGCGCATCCACACGAATGAGAAGCCCTTCGGCTGCATGTACTGCCCGCGTTTCTTCCGCCAGCGCACTATCCTGAACCAGCATTTGCGCATCCACACCGGCGAGAAGCCCTACAAGTGCGCCCAGTGCGGCAAGGACTTCCGGCAGAAGGCGATTCTGGACCAGCATACGCGCACCCACCAGGTAGGAGACCGTCCGTTCTGCTGCCCCATGCCGAACTGCCGGCGGCGCTTTGCCACCGAAAACGAGGTGACAAAGCACATCGACAACCATATGAATCCCAATACCACCAAGgtgcgccgccagcagcagcagcagcaacagcagcagaatcccaacaacaacgcagtGGCCCAGAATGCCCATGTAACCAGCGCCGCATCGGCCGTGGTGGCCAACCATCTCATGAACGACGTGAAGAACATTGCCGCCCAGCAGttcctcaacaacaacaacccggCCACGGCGGACAACAAGGCCAACATACTGCCACGTGGCAtggcggctgcccagcagtCGGTGGTCAAGAATGAGCTCTACTTCCCGCAATGCTATGGACCGCCGTTCCAGCATCCGTTCCAGACGCAGGCCCAGCCTAGCGCCGCCCATGCCAACGGAGGGGGCAGTGTTCCACCGGTGACGGTCACCGTGGCCAACTCGGTGACCCCCGGCGTCGTTGTACAGCAGAATGCGCCCACTTCGGTGGTGGCCCAGTGA
Protein Sequence: MAINFSASFAACIAAGLKVPRQIMYCITQDTGQPYVLYKDSQDAERNAGAIGASAAQWGSEMYPGIQQQAQQHLTAQQQQQQNATVAAQAAAAAAAVQGQQQQPQSPPGGEPGGRENGSGDGRQQQVSPSSSPYPSVQQQQQQQQRANGGADEDAMNQLANQQNSAPNPNQSSNDPQHPAGDTGNPHVQQNGGQAQGEPTNNFQTPDYYAPRHAAAQGGMLAPPGFPPLHYLNKGVLPMEQNGGSGLETYALPELLPGQQNGTGAGGQQNGAGSHGAANGNTVQPNPVASSDGAPTANGTGTTTGSGRANGPGRPHKNKPHSDLRLFKCLTCGKDFKQKSTLLQHDRIHTDARPFPCSECGKRFRQQSHLTQHLRIHANEKPFTCPYCSRSFRQRAILNQHIRIHSGEKPFACPECGKHFRQKAILNQHVRTHQDVSPHLIFKNGPHPTLWPSDVPFPGDETDTKGDIAGGSGYHDDDSQGTPDGSGGMHYPSYFKDGKAGQKILPDVLQHIGVRPANMPLYVRCPICDKEFKQKTTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPFGCMYCPRFFRQRTILNQHLRIHTGEKPYKCAQCGKDFRQKAILDQHTRTHQVGDRPFCCPMPNCRRRFATENEVTKHIDNHMNPNTTKVRRQQQQQQQQQNPNNNAVAQNAHVTSAASAVVANHLMNDVKNIAAQQFLNNNNPATADNKANILPRGMAAAQQSVVKNELYFPQCYGPPFQHPFQTQAQPSAAHANGGGSVPPVTVTVANSVTPGVVVQQNAPTSVVAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00337748;
90% Identity: iTF_01319193;
80% Identity: -