Lsab002436.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- -
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010000271.1:7920-10926[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.15 19 6.6 0.2 2 23 265 286 264 286 0.96 2 15 0.03 3.8 8.8 2.5 1 23 376 399 376 399 0.96 3 15 0.16 20 6.5 1.3 1 19 406 424 406 426 0.94 4 15 0.0029 0.36 12.0 5.4 1 23 435 457 435 457 0.97 5 15 5.9e-05 0.0074 17.3 0.5 1 23 464 487 464 487 0.96 6 15 4.3e-05 0.0053 17.7 1.0 2 23 495 516 494 516 0.96 7 15 0.0056 0.71 11.1 0.1 2 21 543 562 542 563 0.94 8 15 0.0044 0.55 11.4 2.4 1 23 617 640 617 640 0.96 9 15 0.014 1.8 9.8 0.3 1 23 677 700 677 700 0.95 10 15 0.0001 0.013 16.6 1.3 2 23 736 758 735 758 0.95 11 15 2.1e-05 0.0026 18.7 0.5 1 23 772 794 772 794 0.95 12 15 0.00017 0.021 15.9 1.5 1 23 800 822 800 822 0.99 13 15 2.8e-07 3.6e-05 24.6 2.6 1 23 828 850 828 850 0.98 14 15 8.8e-06 0.0011 19.9 2.1 1 23 856 878 856 878 0.98 15 15 1.1e-05 0.0013 19.6 0.5 1 23 884 908 884 908 0.91
Sequence Information
- Coding Sequence
- ATGCAGATTCCGGCAATCTGTCGCACCTGCGATTCCGAGCAGTGCGCCAATCTCTACCAGCTCACCTACCGCCATGAGAACTACCCGCACCGGACGCTCATGGAACTCCTAAAAGAAATCGGCATAGTCGACCCCTCAGGTCCCTTCAACGATGCCATGCCCCAGTGCATGTGCATCGAGTGCCTCAACAAACTGAAAAGTGCCTACGACTTTGTGGTGCAAGCCCGGGCCGCCAACGAACTTCACATCTGCAAGCTGCACTCCCGCAAGAGCACTTCATCAACCACCGACTGCCTGCAGGAATCGCCCATGGAAATCTGCGCCGAGCAGCATGTGAAGGTCGAACTGGAAACCGAGCCTGATCCTGAAGTAATTAATACCACGGATTGCTATGACTTGCTGGAAACCACGGTCCTCGGCGACTCGGATGAGGCTGAGACGAAGAAGACGTTGGATCCACTAGTCATGGCCGAGGGCATTAAACTGGAGGACTCCACAAACGCTCACTGGGCCGAGTGCTCCAGCGATGGCGGGCCCGAGGCCAGCGACAGTGATTACGAGGACGAAGACTCCATGGATGATTTACCCTTGCAGCAGCGGGCCAAGAAATGGAAGGCCTCGGAAGCGCCTGTGCCGGCGCTCAGGAGAAAGGGCAGACCGCCGGCCAAACGGAAACCGCCAGCCGACTCAGAGCCCCACGCCGGCCCCAAGCGCACGCCCAATTTGAATGACCGCAAAAAGGCCAAGGACATCGACATCAACCTCTGCAAGCCACACGGCTACAAACTAATCCAGTGCATGATTTGCCAGGGCAAATACGACAAGATCGCCGACCTGCGCCAGCACCTCAAAGAGCACCCCGATATCTTCAGCTCAGACGATCTGACGCCCACGGAACTCAGTGATCTGGTGGACTTATTTTACCCCGACATGAAGCAGATGACCAAGAACCAGCTGAGGTCCCGCGCCCACAAGGATTTAGTGGCTGGAAAGTTTTCCCGCTTCTACTCCATCACCAACCAATCCGGCTACGAAATGGACCTCGACAGCTCGGAGACCGAGAGCGAGGCGGAGCTCGACAACGACGAGCAGATCGTCACCCAGAAATCCAGGCAAAACGCCAAGTACGCCTGCGAGCTCTGCCTGCTGCGCTACCATCGGAAGTACCAACTCTACGAGCACCAGCGCCTGTCGCATCTCTGGGCAGATGCCCCCCACGTGTGCGGGCGCTGCGATGCCCGCTTCGTCAGCGTGAAGCTGCTCAAGCATCACTTCTACCAGTGCCGGAATGCCCAGAAGCGCTTCATGTGCCACAAGTGCCCGCTCAGGTTCCGCTGGAAGCACAACCTCAAGGCCCACTACCGCGACCACAAGAACACAACGCAGACCTTTGAGTGCGTGGAGTGCAAGCGAGTCTTTGACAAGAAGAAGTCGCTGACGGTGCATTTGCTTAGCGTGCATGCCGACGAGTCGAAGCTGATTCCCTGCCAGTGGTGCAGCCGCAAGTTCTACCGCCAGGACTACCTGGTCAAGCATTTGAAGCGGCACGGCATCCGCGAACAGGACATTCCGCTGGCCGAGACTCTCATCACGGCCACGTCGAGGCCCAACGGCTCGAAGAGCATCCAATGCAAAATCTGCAGCCTCCATTTCCAGCGCATAGCCGATCTGCGGGCCCACATCCAATTGGACCTGAAACTGGCCCACTCGCCGCATCACAAGTACGACTCCCCGCTCAACTATTCCATCACCAACGAGTCCGGCTTCGAGCTGCACCTGGACGACTCCGAGACGGACGACGACTCCAAGGCTCCGGCCTCCTGTGCCATCTACAAAACTCCCACGCTGTACGTCTGCGAGCTGTGCAACGTCCAGTGCCGCAGGAAGTTCGAGATGACCCAGCACCAGCGGGCCATGCATCGCTTCGACAAAATGCCCCACGAGTGCGAGCTCTGCGTCTTCAAATGCGTGTCCAAGACCATCATGGACCACCACAAGCAGGTGCAGTGCTTCAGCGAGGGCAAGCAATATAGCTGCCCGAAGTGCAGCTTCAAGTTCATGTGGCCCGAGAACCTCGAGCAGCATTTGTTGCTGCAGCATCCCAACGCGGGCAGctcggccaaggcagcggcctTGCCCGTGCCGTCGACGCAGGCCCAGCAGACGAAAGTGGCCGAGGCCACGGATACGGgcgtgcagctgctgcagtgtCCCCACTGCGATCGCACCTACCAGATGCAGTCGCGGCTGAACAATCACATACGCGACGTGCACATCAATGGGGACCGCAAAAGGAAGGAGGCCGTGAAGAAGTTCCTGTGCTCCCTGTGCGGCAAGGAGACTCAGTCGGCCTCTAATTTGGTGACGCATATGCGGCGCCACACCGGCGAGCGGCCGTTTAAATGTGATCTATGCGAAATGGCATTCCCCAGACATTCCGAGATGCTCTCCCATCGCCGCATGCACACGGGGGAGAAGCCATTCCACTGCACGGTGTGCGGCAAGGATTTCGCGCGCTCTGATAAGCTGAAGCGGCACATGCTGACCCACAGCGGGCTGAAGCCGTACAAGTGCAGCTACTGCGAGAAGAGCTATCGCCAGTCGAAGGACTTGAACCTGCACGTGCAGCAGCACACGGGCGAGTGTCCTTTCGTGTGCGGCACTTGCGGCGAGCGGTTTATTCAGAGCAGCTCCTTGGAGAAGCACCGCATGATGCGCCGGCACTTCGATGAGGTGAAATGA
- Protein Sequence
- MQIPAICRTCDSEQCANLYQLTYRHENYPHRTLMELLKEIGIVDPSGPFNDAMPQCMCIECLNKLKSAYDFVVQARAANELHICKLHSRKSTSSTTDCLQESPMEICAEQHVKVELETEPDPEVINTTDCYDLLETTVLGDSDEAETKKTLDPLVMAEGIKLEDSTNAHWAECSSDGGPEASDSDYEDEDSMDDLPLQQRAKKWKASEAPVPALRRKGRPPAKRKPPADSEPHAGPKRTPNLNDRKKAKDIDINLCKPHGYKLIQCMICQGKYDKIADLRQHLKEHPDIFSSDDLTPTELSDLVDLFYPDMKQMTKNQLRSRAHKDLVAGKFSRFYSITNQSGYEMDLDSSETESEAELDNDEQIVTQKSRQNAKYACELCLLRYHRKYQLYEHQRLSHLWADAPHVCGRCDARFVSVKLLKHHFYQCRNAQKRFMCHKCPLRFRWKHNLKAHYRDHKNTTQTFECVECKRVFDKKKSLTVHLLSVHADESKLIPCQWCSRKFYRQDYLVKHLKRHGIREQDIPLAETLITATSRPNGSKSIQCKICSLHFQRIADLRAHIQLDLKLAHSPHHKYDSPLNYSITNESGFELHLDDSETDDDSKAPASCAIYKTPTLYVCELCNVQCRRKFEMTQHQRAMHRFDKMPHECELCVFKCVSKTIMDHHKQVQCFSEGKQYSCPKCSFKFMWPENLEQHLLLQHPNAGSSAKAAALPVPSTQAQQTKVAEATDTGVQLLQCPHCDRTYQMQSRLNNHIRDVHINGDRKRKEAVKKFLCSLCGKETQSASNLVTHMRRHTGERPFKCDLCEMAFPRHSEMLSHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPYKCSYCEKSYRQSKDLNLHVQQHTGECPFVCGTCGERFIQSSSLEKHRMMRRHFDEVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -