Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: zfh1
Assembly: GCA_037075105.1
Location: JBAMCP010000468.1:43239-47428[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 9.6e-06 0.0012 19.8 1.7 1 23 153 175 153 175 0.97

2 15 0.0012 0.16 13.1 1.2 3 23 183 203 181 203 0.94

3 15 7.9e-05 0.0099 16.9 0.1 1 23 342 364 342 364 0.98

4 15 0.00054 0.068 14.3 1.0 1 23 370 392 370 392 0.98

5 15 3.2e-05 0.004 18.1 2.9 1 23 422 444 422 444 0.97

6 15 0.00016 0.02 15.9 0.1 1 23 477 499 477 499 0.95

7 15 0.0095 1.2 10.4 1.3 1 23 505 528 505 528 0.97

8 15 0.023 2.9 9.1 0.4 3 19 537 553 536 554 0.95

9 15 0.00014 0.017 16.1 5.6 1 23 563 585 563 585 0.97

10 15 0.029 3.6 8.8 0.3 2 23 591 612 590 612 0.96

11 15 8.1e-06 0.001 20.0 1.0 1 23 621 643 621 643 0.98

12 15 0.00091 0.11 13.5 0.1 3 23 651 671 649 671 0.97

13 15 4.9e-05 0.0061 17.6 0.5 1 23 677 699 677 700 0.95

14 15 0.2 25 6.2 0.1 1 23 710 732 710 732 0.96

15 15 0.0049 0.62 11.2 0.2 1 23 1275 1297 1275 1297 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	9.6e-06	0.0012	19.8	1.7	1	23	153	175	153	175	0.97
2	15	0.0012	0.16	13.1	1.2	3	23	183	203	181	203	0.94
3	15	7.9e-05	0.0099	16.9	0.1	1	23	342	364	342	364	0.98
4	15	0.00054	0.068	14.3	1.0	1	23	370	392	370	392	0.98
5	15	3.2e-05	0.004	18.1	2.9	1	23	422	444	422	444	0.97
6	15	0.00016	0.02	15.9	0.1	1	23	477	499	477	499	0.95
7	15	0.0095	1.2	10.4	1.3	1	23	505	528	505	528	0.97
8	15	0.023	2.9	9.1	0.4	3	19	537	553	536	554	0.95
9	15	0.00014	0.017	16.1	5.6	1	23	563	585	563	585	0.97
10	15	0.029	3.6	8.8	0.3	2	23	591	612	590	612	0.96
11	15	8.1e-06	0.001	20.0	1.0	1	23	621	643	621	643	0.98
12	15	0.00091	0.11	13.5	0.1	3	23	651	671	649	671	0.97
13	15	4.9e-05	0.0061	17.6	0.5	1	23	677	699	677	700	0.95
14	15	0.2	25	6.2	0.1	1	23	710	732	710	732	0.96
15	15	0.0049	0.62	11.2	0.2	1	23	1275	1297	1275	1297	0.97

Sequence Information

Coding Sequence: ATGAACAATCCGGACTATGGCGGTATTCAATGGATACAGCAGCACGTCTCGGTCGGGGAGGCCGCAGAGGCTGATATTTTGGAGAACGAAGAGGATGTTGTCGACGGCGGGACCACAACCGCCTATCTGGTGAACGGCAATGCCACGGACGAGGACCTCGACCATATGGCAGCCGAGAACCTGATTTTCATGGCGCGTGACGGTCAACTTAGTGAGATTATTGCCGCCAATGAGACCGGCGGCGCTGTTCTCGTGACCTCCGATGGCGCCGTTGCCTACGGGGCTGAGCCTTTCGACGACGACACCCAGGTGGTCACTGAGGAGGTCATCACGGACGATTGGGTGCAGCACCAAGGAGCGGAGCGAGTCGAGATTGCAGCGGAGCAAATTGCGGGCAACACCAGTTCCCAGGAGCTCTTGGACATGGAGCAGGACCAGTACACGGCACTTCGTCCATATCCGTGTGATTTCTGCAGTCGACGCTTCAAAAAGAAGAGCAGCCTAAACAACCACATGTTGGCCCACCAGAACGACCGCCCGCATCTGTGTAAACTGTGTGGGGCCCGGTTCTCCCGCCGGGTGGAGTTGATCAGCCACTTCAAGGCGCACGCTGAGGCCCAGGACGCGGCGGACGCGGAAGCACAAGGCCTTCACGACATCAACGTAAAGGTGAAATATGAGCCGCAGCCGAGATCCCTGGACGATCATTACTACGACCAAGAGTGGCCTTCCTACCAAGAGCCCATCGTATCCAACATGAGCGTGAACCCCACGCCCTACGCCACCGTAGGCGAGAGCACAGCTGGAGCGCCTACACCGGCCCGAGGACGAATCAGTCGGCTCAAGCCAAAGGACGAGACAACGCAGTACATTGTTATTGCGGATAAGCCGCCCATCGACGAATTGGAGTATCTGAAGTGCCCAGAGCCGACATCGTCTGAGGTGGAACTGAGCCATGGGCCAACCGAGCTGCCCACCTCTGGCTCGCAGCCACGCTTTCCCGTGATTGACGATAACAAGCCCTTTGTCTGCCAACAGTGCGGGCTGGCGTTTGCCCGCGAAAAGGCTTTGGTCTCCCACATCAAGAACCACCGAGTGGACTCGCCCTTCGAGTGCAACCAGTGCCAGGAAATGTTCCTGGACAACACCAGCCTGCAGGAGCACCAGAAGACCCACCAGTTCGAGGAGAGCAATTCGGAGTACGATCCCACCACCGCCGAGGACAGTGCCTCCGAGTcggagcaggagcagctgtACGGCGACTTCTACTGCAATCAATGCGGCATTTCGTTTCACAGGCAGGACCTGCTGCGGCGTCATGCCAAACAGCACGACAAAATGGCCTCATCCCGTCCCGACCTGCAGCCGTCGTCCACAGCAGCGGCCTCGGAAAGGGAAGGCGAGCCCGAGCAAGCCAACGGCGCGCCCCACTCCTGCAACACGTGTGGCAAATCATTTCCCAGCGCCCTCGAATTGCTGGCCCATGCCGAGATCCATGCCCGGTTCCCGCCTTTCAAGTGTGTTCTCTGCGGGATTAGCTTCTACGAAGAGCAGGCCATCAAGCGCCACCTGCACACCCGCCATCCCCACGAACTAAAGCCCAACTCGTGCGTGCTCTGCGGCAAGGAGTGCCGCGATCGCAAGGCCCTCATCAAACACGCCTGGGACCACTCCCGCGAGAAGTGCCACTCGTGCTCCAAATGCGGCAAGAACTTCCACAACAAGGCCCGTCTGAAACGCCACATGGCCTCGCATCGGGACAAGTCGGTGGTCTGTGAAGTGTGCCAGGAGGAGTTCCCCGACGGCCGCTCTCTCTCCAACCACCGGCACTCGCACAGCACCACATCGCCGGGCAAGCTCTTTCCCTGCCACGAGTGCGGCAAGACCTTTGGGTCGCGCAGCTCCCAGCAGATCCACGTGCGCATCCACACCGGCGAGCGTCCGTACGGCTGCCGCTACTGCTGGAAGGCCTTTGCCGATGGCGGGACGCTGCGCAAGCACGAACGCATCCACACCGGCGAGAAGCCCTATGCCTGTTCCGTGTGTCCGCGGGCCTTCAACCAGAGAGTGGTGCTGCGGGAGCATATTCGCTCGCACCACTCGGGGCTGGACGCGGCGCGCGGCACTTACTTCTGTCCTGTGTGTTCTTCCGACTTGGCTTCCTCGAACGAGTTGATCCAGCACCTCATCCAGCACAGCGACTCGAACACGGCCAAGCAGAGGCAGCCGATTATGGGCCCGCGGAAATACAAACGGCGGAGGAAGCTTTTACCGCACGAGATCGCCCACCTGCGTTCGGAAACGAAAGACGGCGCTGGGGCCGCCGAATATGGCTCCGATCTCGACATCTGCGACTTTGAGGTGGACAATGTGGACGAGCTTTTCGATATGCCCGAGCCTTCGGCGAAGAACCCAGCGGGAAAGGAGAAGCGCAAGAAGTCCGCGGCGGCCCAGAAGGCCGAAGTCAACGGCAAAATTCCCACAGCCTCGCTGGAAACACAGCCCGCCAAGTCGCCGGCCAAAAAGTCGCAAGCCTCCAGCAAGCCTCGATTTgactccaccagcagcaactccgACCGCTTGTGGGACGACAAGTTCATGCAGGCCAGCACGCAAACGCCAGACGATGCCTACAAGACCCTCTTCCAAATCGACTCCCTGGTCGTCGTGAACGACACAGCACTGCCAGCGGTGTCCTCATCCAGCACCAAGACCCGCCGAAGCGCTAAGCTGCAGGCCAATGCGGCAGCCACGGTGTCCACGCGGAGCACCACAAGCACCCACAGCGATGCTATAAGCTCCACCACCTCCGGCCGCAGCCGAAAGCGAAGCGCCAAAGCCAATGCCAAGCCAGGGCCTGCCGGCTGTGGGCCGCGCATGATTCACACTGAGAAAATGCGGGTACCCCCAGGCGTCCACGAGACTGCCAAAAAGAGCCGCGGCAAGACCTTCATTGCCCGCACCGAGACCAGCGGAGTGGGCTCCCTGCCGAGCACCTCCAAGTCGGGCTCCTCGACGCGCGCCAGCTCCACGACCATCGTGGACGACTACGAGATTATTTCACCCGATACTCAGCCGCCAAATCAAATAAGCTCGAGCCCGCTCCACATcaagcaggagcaggagcagcgcgTCCAAATGATGTACGACGACTCGCACCTGCTGATCGATGCGGCGCTGCTAAGGGACAAGGCGTACGAGAAGTTCAACCCCAGCATAGTCAACGACCTGGAGGAAATCCTGCGCTCGCCTTTGAAGAGTGACCGTGGGGCCCGCATTCGGTTCACCAGCGAGTCCTCCACCACGCCGCAGTTCCTGCCGGAGGAGGAGCAGAACCTGATTAAAATCGAGCCCACATCCCCGGACCTCCGCGAGATGGTGGAgagccagcagcgcctgcccACGGCGAGAATAATGCCTGTctcgtcgtcctcatcgtccGCCCGCACCGCTCGCCATCCGCGCCAGCGGCCTGTCACTGCCAGCACCAAGCCCCAGGCGGCGGACTCCGTGCACTCCAGCTCGAATGGAGGAGGACTGAAAAGGCAtaccgccagcagcaagccCTTCCCCGCCTCCAAGAAGCCCCACTTGGTAGGTGAGCTGGACAACGGCAAGCTGGCCTCGCCCGCCTCAAATGTAACCTCCTCGTACCTCAGCTACGGCGTGGACTCCTACAATGTCAGCGTCCCGCCCAGCGCCAACACTGCCGACGTGAGCTCGGGCTTCTTTTCCATATCGGAGGTTGTGTCTGCCGCCGACGCAGCCGACGcagcggccaaggcggcggccgctggcaaGCCGGAGCGCAAGAGCCGATCCTTCGAGTGTGAGATGTGCTCGGCCATTTTCTACGATcgggcccagctgctggaccACGTCCACATTCACATCTAA
Protein Sequence: MNNPDYGGIQWIQQHVSVGEAAEADILENEEDVVDGGTTTAYLVNGNATDEDLDHMAAENLIFMARDGQLSEIIAANETGGAVLVTSDGAVAYGAEPFDDDTQVVTEEVITDDWVQHQGAERVEIAAEQIAGNTSSQELLDMEQDQYTALRPYPCDFCSRRFKKKSSLNNHMLAHQNDRPHLCKLCGARFSRRVELISHFKAHAEAQDAADAEAQGLHDINVKVKYEPQPRSLDDHYYDQEWPSYQEPIVSNMSVNPTPYATVGESTAGAPTPARGRISRLKPKDETTQYIVIADKPPIDELEYLKCPEPTSSEVELSHGPTELPTSGSQPRFPVIDDNKPFVCQQCGLAFAREKALVSHIKNHRVDSPFECNQCQEMFLDNTSLQEHQKTHQFEESNSEYDPTTAEDSASESEQEQLYGDFYCNQCGISFHRQDLLRRHAKQHDKMASSRPDLQPSSTAAASEREGEPEQANGAPHSCNTCGKSFPSALELLAHAEIHARFPPFKCVLCGISFYEEQAIKRHLHTRHPHELKPNSCVLCGKECRDRKALIKHAWDHSREKCHSCSKCGKNFHNKARLKRHMASHRDKSVVCEVCQEEFPDGRSLSNHRHSHSTTSPGKLFPCHECGKTFGSRSSQQIHVRIHTGERPYGCRYCWKAFADGGTLRKHERIHTGEKPYACSVCPRAFNQRVVLREHIRSHHSGLDAARGTYFCPVCSSDLASSNELIQHLIQHSDSNTAKQRQPIMGPRKYKRRRKLLPHEIAHLRSETKDGAGAAEYGSDLDICDFEVDNVDELFDMPEPSAKNPAGKEKRKKSAAAQKAEVNGKIPTASLETQPAKSPAKKSQASSKPRFDSTSSNSDRLWDDKFMQASTQTPDDAYKTLFQIDSLVVVNDTALPAVSSSSTKTRRSAKLQANAAATVSTRSTTSTHSDAISSTTSGRSRKRSAKANAKPGPAGCGPRMIHTEKMRVPPGVHETAKKSRGKTFIARTETSGVGSLPSTSKSGSSTRASSTTIVDDYEIISPDTQPPNQISSSPLHIKQEQEQRVQMMYDDSHLLIDAALLRDKAYEKFNPSIVNDLEEILRSPLKSDRGARIRFTSESSTTPQFLPEEEQNLIKIEPTSPDLREMVESQQRLPTARIMPVSSSSSSARTARHPRQRPVTASTKPQAADSVHSSSNGGGLKRHTASSKPFPASKKPHLVGELDNGKLASPASNVTSSYLSYGVDSYNVSVPPSANTADVSSGFFSISEVVSAADAADAAAKAAAAGKPERKSRSFECEMCSAIFYDRAQLLDHVHIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -