Basic Information

Insect: Lissocephala sabroskyi
Gene Symbol: BCL11B
Assembly: GCA_037075105.1
Location: JBAMCP010000271.1:14084-18107[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.025 3.2 9.0 3.0 1 23 153 175 153 175 0.94

2 25 0.13 17 6.7 3.2 1 17 181 197 181 203 0.80

3 25 0.0098 1.2 10.3 0.9 2 23 235 256 234 256 0.96

4 25 1.1 1.4e+02 3.8 1.9 3 23 331 352 329 352 0.86

5 25 3.7 4.7e+02 2.2 0.3 2 21 363 382 362 383 0.90

6 25 3.9 4.9e+02 2.1 0.4 1 20 392 411 392 413 0.92

7 25 0.91 1.1e+02 4.1 4.7 3 23 426 446 424 446 0.96

8 25 0.00055 0.069 14.2 0.2 2 23 517 539 516 539 0.96

9 25 0.0011 0.14 13.3 0.2 1 22 549 570 549 570 0.95

10 25 0.046 5.7 8.2 0.3 1 23 579 602 579 602 0.94

11 25 0.0017 0.21 12.7 0.6 2 23 613 634 612 634 0.96

12 25 1.3e-05 0.0016 19.4 4.8 1 23 640 662 640 662 0.98

13 25 0.052 6.6 8.0 0.2 2 23 688 709 687 709 0.97

14 25 0.015 1.9 9.7 0.1 1 23 801 824 801 824 0.95

15 25 0.001 0.13 13.4 1.1 1 22 831 852 831 852 0.95

16 25 0.066 8.3 7.7 0.4 2 23 862 884 861 884 0.92

17 25 0.0048 0.61 11.3 1.9 1 23 900 922 900 922 0.98

18 25 0.004 0.5 11.5 2.9 1 23 1012 1035 1012 1035 0.94

19 25 0.012 1.5 10.0 0.1 1 23 1072 1095 1072 1095 0.93

20 25 8.6e-05 0.011 16.8 1.3 1 23 1118 1141 1118 1141 0.97

21 25 2.1e-06 0.00027 21.8 0.4 2 23 1160 1181 1159 1181 0.95

22 25 0.00078 0.098 13.8 4.1 1 23 1187 1209 1187 1209 0.99

23 25 2.4e-06 0.0003 21.7 2.7 1 23 1215 1237 1215 1237 0.98

24 25 1.6e-07 2e-05 25.4 2.3 1 23 1243 1265 1243 1265 0.99

25 25 0.0003 0.037 15.1 0.6 1 22 1271 1292 1271 1295 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.025	3.2	9.0	3.0	1	23	153	175	153	175	0.94
2	25	0.13	17	6.7	3.2	1	17	181	197	181	203	0.80
3	25	0.0098	1.2	10.3	0.9	2	23	235	256	234	256	0.96
4	25	1.1	1.4e+02	3.8	1.9	3	23	331	352	329	352	0.86
5	25	3.7	4.7e+02	2.2	0.3	2	21	363	382	362	383	0.90
6	25	3.9	4.9e+02	2.1	0.4	1	20	392	411	392	413	0.92
7	25	0.91	1.1e+02	4.1	4.7	3	23	426	446	424	446	0.96
8	25	0.00055	0.069	14.2	0.2	2	23	517	539	516	539	0.96
9	25	0.0011	0.14	13.3	0.2	1	22	549	570	549	570	0.95
10	25	0.046	5.7	8.2	0.3	1	23	579	602	579	602	0.94
11	25	0.0017	0.21	12.7	0.6	2	23	613	634	612	634	0.96
12	25	1.3e-05	0.0016	19.4	4.8	1	23	640	662	640	662	0.98
13	25	0.052	6.6	8.0	0.2	2	23	688	709	687	709	0.97
14	25	0.015	1.9	9.7	0.1	1	23	801	824	801	824	0.95
15	25	0.001	0.13	13.4	1.1	1	22	831	852	831	852	0.95
16	25	0.066	8.3	7.7	0.4	2	23	862	884	861	884	0.92
17	25	0.0048	0.61	11.3	1.9	1	23	900	922	900	922	0.98
18	25	0.004	0.5	11.5	2.9	1	23	1012	1035	1012	1035	0.94
19	25	0.012	1.5	10.0	0.1	1	23	1072	1095	1072	1095	0.93
20	25	8.6e-05	0.011	16.8	1.3	1	23	1118	1141	1118	1141	0.97
21	25	2.1e-06	0.00027	21.8	0.4	2	23	1160	1181	1159	1181	0.95
22	25	0.00078	0.098	13.8	4.1	1	23	1187	1209	1187	1209	0.99
23	25	2.4e-06	0.0003	21.7	2.7	1	23	1215	1237	1215	1237	0.98
24	25	1.6e-07	2e-05	25.4	2.3	1	23	1243	1265	1243	1265	0.99
25	25	0.0003	0.037	15.1	0.6	1	22	1271	1292	1271	1295	0.91

Sequence Information

Coding Sequence: ATGCAGCGCATGGAAATTTGTCGCACCTGCGCTAAGGACCATAATGCCAGCACTGTGCCGCTGTCCACGCCAATTACCAAgcacgaaaataaaacccttGGCGAGATTTTGCAGCTACTTTTAAATCTTAATGTTTATAGTCCCGAGGACCAGGAACTGCCACAAACCATTTGTGCCTCTTGCTGCGACCGTTTGATAGCCTGCTATGAGTTCGTCCTGCAAGCGCAACAGGCGACTGAGCAGCTCAAGGCGCGCGCAAGCGCCCAATGCCTCGTCGAGGTGCCCACAGACCTGCCGACGCTGCTGGAAGTCGAAATGGAAGCGGACATAGACGACAGCTTCTTCCAGACCACCGAGAATCACCCCAGCGAGGAGGATGAAGACGACAGGCCGCTGAGCCAAAGACTTCAGGCTCCCACCGGGGAGTCACCTCAGGCCAAGcgtggccgcagccgccatgTGTGCAGAGAATGCGGCAAGTCCTTCTCCTGGCACCGCGACATGCTGCGCCACTCGCGGGCCCACTTTGAAAAGGCCAAGTTCACCTGTGAAATCTGCGGAAAGAGCTTCCTGCGCAAGGACAAGTACGCCTTCCATTTGCGCTGCCACGAGAAGAGCCAGGCCAAGTtccaggccctgcagcagAAGGACGAGTGGCGCTTCGCCCAGCGTTTATACAGCTCCGGTCGCCTCAAGCGCATTGAGTGCAAATTGTGCGGCTTGAAATGCCAGCGCATCGAGGAGCTCCGTTCGCATATCTCCAGCCATGTCAGCCCTGAATCTCTGGGGCAGTTAACCCTTCAAAACGACATTGTCAGCGTCCACTTTGCAGCCGTCAAAGAGCTCTCCCTGGACGAAGTTAAGTCCTCTGTGTGTGCGGACATAGCAGCCCAGCGTCTGGACAAATACGCGGCTGTGGTCAATGCCTATGGCTATGAGTTGGGGCTGAGCGACTCCGACGATGAGTTGGCCGGCCGCGGGAAGTACAATTGCATCTCCTGTAAGCTGTCCTTTGGCCGCAAGCACCGCCTGGTGCGCCACACTTTGGAGGACCACACGCAGGCTGCAGACGCACAGGCGGGCCAGGAGTGCTCTGAGTGCCGGATTCGCTTTATGGATGGAAAACTCTATGACCAGCACAGGCGCTCCCAGTGCTTTAATGAGCTGCGGAAGTTCCGCTGTGCCCGCTGCCCGGGGCGGTTCATGTGGCCGGAGAACCTCGAGCGCCACTCTTGCTCCCAGCGCCAGGCCAAGGAGCGACGCCAGCGCTGCCTCTGCTGCTTGTGTGATCAGCAGTTTGGCAAATTATCCGAGCTACACGAACATCTGGCCAGCCACAGCGACGGCTCCACGGGGATTGATTTCACGGCTGCCTTCTTCCAGTTCTTTGGTCAAAACCGCACGGCCGCTGAACTCACCCAAGAAAtcgccgccagctgcaggaCACAAGACTTCAGCCGCTTCTACAATGCCGCCGATGAGAGAGGCCGGGAGTTGGACCTCTTCGACTCCGATGACAGCGAGGGAGACGAATCAGCCGATCGCCTGAGCTGCGGAGTTTGTGGCGCTGACTTCACTCTCCGTAGGAATCTTCTGCTCCACCAAAGGACTCTTCACTCGTCTGTAGAGCAGGAGAAACTTCCCTTTTGCTGTAGTGACTGCGGCGCTGGGTTTGTCTCCTTGGCTCTGCTGGagcagcaccgccgccgcttgtGTGGCAAAAAACACTTCCAGTTCGAGTGTGTGGAGTGCCAGCTGCGCTTTGTTTGGGAGTCCAACTACCAAAAGCACCTGGAGCAGCTTCATCTAACCAGGAAACGTGGAGGCGCCAACCTGCAGTGCGACCAATGCGACAAGGTGTTCATCTGGCTGAAGGACCTGAACCGCCACAAGAAACTGCACTTGCCGGACGCCCAGTTCGAGTGTCCCCACTGCCAGCGGCGGTTCCACCGCAAGGACGGCCTGAAATCCCACCTGCGGGTCCACGGAGAAGCCGCTGGCGCCAGCCAGGCGCCGCTGTACTTTGCCCAGCTCAGCCAGCCGCATGGCCGCAAGCAAATCCAGTGCCGCATTTGCCTCAAGTTTCTGCCCAAGATCTCCGAGCTGCGCGCGCATCTCtccagccaccagcaggacGTGGGACTCGAAGGCGAACTTAGTTTGCCCTCCGCCATTGCGGGCATTTCCCGCTCTTTGTATCCGGAGCTAGAAGAGCCGCTCAGCAAGTCGCAATTGACAGAGAGAATTACCCACGATCTGTCGCAGAATCTGGACCGGCAGAGGTTCTTCTCCATCACCAACCAGGCCGGCCGCGAGCTCAGCCTGGACAGCAGCGAGACGGACAGCGACTCCGACCACGAGGCCAGCCCTCAGCCGGGGGACAGGCGCTCCCCTCGCCTCTACCCCTGCGCCCTGTGCGACTTGGTCACCATGcgcaagcagcagctgctggcccaccagctggagcagcacgAGTGGCGGGAGGCTCCCTACGAATGCCAGCACTGCGGCGCCCGTTTCGTCAACGAGGATTTGCTGGGCCATCACCACCGCTCCATGTGCCGCAGCCAGGAGAGGAAATTCTtgtgccgccgctgccctttGCGCTTTCGCTGGCAGGAGAATTTGCAGGCCCACTCGCGGCTGGCCCATCCCGAGGAGGAGCTGAAAGAGGAGCAAATAAAGGAGCCCAGCATctaccgctgccgctggtgcgTGCGGCGTTTCCACCGCCTGGCAAATCTGCTGCAGCATGTGGAACGTCATGGGCTGagcccccagcagctgccctaTGCCGAGGCCTTGGTCAATGCCCATCGCCATCCCCACAGCCCCAAGCAGATAGCCTGCCAGGTGTGCCAGCTGAACTTCCCCTCGATAGCCAAGCTGAGGTGCCATTTGCAGGCCGCCCCGCCGGGCAGCCACCATGAGTTCGGTTCACCCAAAAACTACTCCATCACCGACCAACTGGGCTATGAATTGGCTTTGGAGGACTCGGACACCGAGGAGGAGGGCTCCACTGGGCCTGGCAAGTACTCCTGCTCGATGTGCCAGCTAAGCTGCCGAAGGAGCTTCGAGCTTTTCCAGCATCAACTGGCCATGCACCGGCGGGAACGCATTCCCGGTGGCTGTGATCTGTGTCCTTTTAAGAGCGTCTCGGAGGCTCTGATAGAGCGCCACCGGGCAGGCCAGTGCGGCAATAAGGACAAGCAATTCCTGTGCCCTTTGTGTGGGTATAAATTCATGTGGGAGGCCAACCTGGAAAAGCATTTGCAACTCCAACACTCAGGCCCTAAAAGCGAGCTGACCATCACCGCTGTGGAGACTTTGGAGGAATCCTCAGAGCGCGTGTTCCAGTGCGGCGAGTGCCCGCGGAAGTACAACCGCAAGGACCGCCTCACCGCCCATGTGAAGAAGTTCCATGCAGCGGGGGTGGCACCACCGGAGCCCGTGAAAGTGGCGCCCCAAAAGCGCTTCCTCTGCGCTTTTTGTGGAAAGACTGTGAGCTCCTCTTCGAATCTGATCATCCACATGCGTCGACACACCGGCGAGAAGCCTTTCAAGTGCGACTTCTGCAAAATGGCCTTTCCCAGGTCCTCGGATCTGCAGTGCCACCGGCGCACCCACACCGGCGAGCGGCCCCACGAGTGCACCGTCTGCAGGAAGAGCTTCGCCCGCTCCTACAAACTCCAGCAGCACATCCGCATCCACAACGGCGAGCGGCCCTACAAGTGCAGCTACTGCGAGAAGAGCTTCACCCAATCGAATGATTTGACCCTCCACATACGCCGGCATACGGGCGAGCGGCCTTACCAGTGCGACGAGTGCGGCGAGCGGTTCATTCAGGGGACGGCGCTGaggcaccaccgccagcagcaggggcaTGGCaaggcggggggaggggagtga
Protein Sequence: MQRMEICRTCAKDHNASTVPLSTPITKHENKTLGEILQLLLNLNVYSPEDQELPQTICASCCDRLIACYEFVLQAQQATEQLKARASAQCLVEVPTDLPTLLEVEMEADIDDSFFQTTENHPSEEDEDDRPLSQRLQAPTGESPQAKRGRSRHVCRECGKSFSWHRDMLRHSRAHFEKAKFTCEICGKSFLRKDKYAFHLRCHEKSQAKFQALQQKDEWRFAQRLYSSGRLKRIECKLCGLKCQRIEELRSHISSHVSPESLGQLTLQNDIVSVHFAAVKELSLDEVKSSVCADIAAQRLDKYAAVVNAYGYELGLSDSDDELAGRGKYNCISCKLSFGRKHRLVRHTLEDHTQAADAQAGQECSECRIRFMDGKLYDQHRRSQCFNELRKFRCARCPGRFMWPENLERHSCSQRQAKERRQRCLCCLCDQQFGKLSELHEHLASHSDGSTGIDFTAAFFQFFGQNRTAAELTQEIAASCRTQDFSRFYNAADERGRELDLFDSDDSEGDESADRLSCGVCGADFTLRRNLLLHQRTLHSSVEQEKLPFCCSDCGAGFVSLALLEQHRRRLCGKKHFQFECVECQLRFVWESNYQKHLEQLHLTRKRGGANLQCDQCDKVFIWLKDLNRHKKLHLPDAQFECPHCQRRFHRKDGLKSHLRVHGEAAGASQAPLYFAQLSQPHGRKQIQCRICLKFLPKISELRAHLSSHQQDVGLEGELSLPSAIAGISRSLYPELEEPLSKSQLTERITHDLSQNLDRQRFFSITNQAGRELSLDSSETDSDSDHEASPQPGDRRSPRLYPCALCDLVTMRKQQLLAHQLEQHEWREAPYECQHCGARFVNEDLLGHHHRSMCRSQERKFLCRRCPLRFRWQENLQAHSRLAHPEEELKEEQIKEPSIYRCRWCVRRFHRLANLLQHVERHGLSPQQLPYAEALVNAHRHPHSPKQIACQVCQLNFPSIAKLRCHLQAAPPGSHHEFGSPKNYSITDQLGYELALEDSDTEEEGSTGPGKYSCSMCQLSCRRSFELFQHQLAMHRRERIPGGCDLCPFKSVSEALIERHRAGQCGNKDKQFLCPLCGYKFMWEANLEKHLQLQHSGPKSELTITAVETLEESSERVFQCGECPRKYNRKDRLTAHVKKFHAAGVAPPEPVKVAPQKRFLCAFCGKTVSSSSNLIIHMRRHTGEKPFKCDFCKMAFPRSSDLQCHRRTHTGERPHECTVCRKSFARSYKLQQHIRIHNGERPYKCSYCEKSFTQSNDLTLHIRRHTGERPYQCDECGERFIQGTALRHHRQQQGHGKAGGGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -