Lsab009282.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- ttk
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010002030.1:6249-9502[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.2e-19 1.4e-15 57.3 0.0 2 45 584 628 583 628 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTGCAGCAATTCTGTCTGCGCTGGAACAATCACCAGCCCAACTTCATCTCGGTGTGCTCCTCGCTCCTGCACAATGGCACGCTGGTGGATGTCACGCTGGCCGCGGaggggcggcagctgcaggcccatAAAATAGTCCTGTCCGCTTGCAGTTCGTACTTTCAAGCGCTTTTCACAACGAATCCGTGTCAGCATCCGATTGTCATACTGAAGGACGTCCAGTACGACGATCTGAAGACAATGGTGGACTTCATGTACTACGGCGAGGTGAATGTGtcgcaggagcagctgcctcATATACTCAAGACGGCCGAGATGCTCAAGATCAAAGGGCTGGCCGAGATGCCCACGGACCCGGCCAACCTCACCAAGTCGGACAGCAAGTCCTCCGAGGGCACCGAgctggtcggccaggccggcgtgaatgtggccggcagcgcggctgcggccgccctggccgccagcggcaatgTAGGCGAGTCCATTTGGAGCAGCAGCGAGGCCCAGcagttccagcagcagcagcagcaggccgcccagcagcagcaccaccaccagcagcaactgcagcagcagcagcaacaacagcagcagcaggccgcccagcagcagctgcagcaccaccaccaccaccaccagcagcagcaacagcagcaggccggcaaCCAAGTGCAAGCGGCCCAgacgcaccaccaccagctgcgGCGGACCCCATCGCCCCTAGGCCAGGGcacctcgccggccaccaggCGCAAGCGTTTGCGCAAATCCTCCAACAACGGCTCAGGGGAAAGGAACAACGCGGAGGAGCAGCACAATAGCACCCTGGAGGCGGCCAATGCGGCCGCAGCGAGCACGGCCAGCCTGAGCTTGGCCCAGATAAGTCAGATGTCGTTTGGCAGTGGCTCGGGCACGGCAGCGGCTCtgggcagcctggccgggcacTCGCTGCATGCGGCCAAACTGCTCAAGGAGTCGGCCAGCAATGAGTTGGACCAGCAGCCTCAGGATTCGGATCTGGACGAGACCCATGGACACATACATATGCAAATTAAACCCGAAGTCGATATTGGCGGTGTGAGTCAGTCGATGCCCCTGGACATTTCCGGCGCCACAACACCCTCCGAACACGATGCCCCCAACTCGCAGTCATCGCACTCGGGTCTGCAATGGACAGTTGTTGATTCAAACTATCCGCGCTTCTccctgcccgcctgccagtcCAACCTCattggcaacggcggcggcagcggcggcaatcAGAGCACCGGCACAAATAgtagcggcggcaacggcgctGGCGTgggcaacggcggcgccaCCACCGACAGGCAGCAGCacgaggcccagcagcaggccagtagccagcagcagcagcagcacctccagcagcaactgcactaccagcagcagcagcacccgGGGGCCTCCGGCCAGGCGTACTCCTCGCAAATCATCACCGTGAGCAACCTAGTCAGTGGCTatgccacggccacggcccaGAACCTGTCGCCCACCTCGCCCAACGAATCGAATATGGTGCAATCGGTCTACAGCCAGGGACCCACGCCGACCCAGAGCCCCGTGCATgcgggcaacagcagcggcggcccctccgccggcagcggcccggGAGCCGGCAATGCCGcgggcagcggctccagcggggccggcagcggcggggccaatgccaatgccagcggGCAGGTGGTCAAGCGCAAGCGCTCGGTCAATCCCCAGGGCGATGAGAACTTTATACGCGCCCTGGAAGCCGTGCGCACCGGCGGCATTGGCTTCTGCAAGGCCGCGCGCCTGTATGGCGTCAACAACCGCACCCTCTGGCTGGAGTACAAGAAGCGCGGCTACCCCGTGTCCCGGCCCAGCATCAAGGCGCGTGTGGTGAAGCAAGAGCCGAACCTGTCGCCCTCGCCCACACCCTCGACGAATCCCGGGGACGACACCACCAACGAGAACTACGAGCATCTaacggcggccgtggcggccgcccagaCCGCTGCCCTGAACATGCAAATACCGCCGCAGGCCGAGACCCCCACGCCCTCGCTGATGTGCACGCCCCACCACGGgacggccgccgcggccggcaCGGTGATGAGCCTGTTCGATCCTCGCTACATGGACTCGCCGGCTGGCCTGCACACCATGAACCGGCAGCGTTACATCGACGCGAGTGGTGCTGGTGCCGGAGCCGCGGCCACAGGTGCGGGCACCATCAATGTCAATCCGGCCGCTGCCATGAATCTACAGAGTATTAATTTCAACTCGATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQALFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSEGTELVGQAGVNVAGSAAAAALAASGNVGESIWSSSEAQQFQQQQQQAAQQQHHHQQQLQQQQQQQQQQAAQQQLQHHHHHHQQQQQQQAGNQVQAAQTHHHQLRRTPSPLGQGTSPATRRKRLRKSSNNGSGERNNAEEQHNSTLEAANAAAASTASLSLAQISQMSFGSGSGTAAALGSLAGHSLHAAKLLKESASNELDQQPQDSDLDETHGHIHMQIKPEVDIGGVSQSMPLDISGATTPSEHDAPNSQSSHSGLQWTVVDSNYPRFSLPACQSNLIGNGGGSGGNQSTGTNSSGGNGAGVGNGGATTDRQQHEAQQQASSQQQQQHLQQQLHYQQQQHPGASGQAYSSQIITVSNLVSGYATATAQNLSPTSPNESNMVQSVYSQGPTPTQSPVHAGNSSGGPSAGSGPGAGNAAGSGSSGAGSGGANANASGQVVKRKRSVNPQGDENFIRALEAVRTGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKARVVKQEPNLSPSPTPSTNPGDDTTNENYEHLTAAVAAAQTAALNMQIPPQAETPTPSLMCTPHHGTAAAAGTVMSLFDPRYMDSPAGLHTMNRQRYIDASGAGAGAAATGAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00904813;
- 90% Identity
- iTF_00904813;
- 80% Identity
- iTF_00904813;