Lsab010070.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- lov
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010002418.1:4830-12513[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-19 7.1e-16 58.3 0.0 1 44 75 118 75 119 0.96
Sequence Information
- Coding Sequence
- ATGTCCTCGGCGCTGACGCTGACGCCCCCACACATGTTTGGATTGGACTCGCCGTTGGGCCTGTTTCCGCCTGGCATCGATCCTGGAAAACTCTACAATCCCCTGATGGAAATGAGCGATCCGCGCGACATGCCCGGCGGTCCGCCGCCTTTcctcaaaaagaaaaTGCCCCGCCCAAAAGGCCAGCACTCGGCGCCACGTGGCGGCCCGCCGCGCTCCTGGACCAACACCGAGCTGACGGAGGCCCTACAGCACGTGTGGAACAAGAAGATGACCACCTCGCAGGCCTCACGGATCTTCGGCATCCCCTACAACTCGCTCCTGATGTACGTGCGCGGCAAGTACGGCAAGAGCCTcaagctggagcagctgcgcaaggACTGCATCAGCGGGCCGCCCATTGAAATGCTGCAGATGGGCatgagcggcggcaacagcggcagcagcggcggcggcggctcctccagcAAGAGCGAGAAGAACAAAGAGCGCAAGGAgcgggagaaggagaagaacaGCAACTCCTCTTCCTCGAATCCCAGCGgggccagcgccggcagcggcgggcaatcagccgccccgcccgctggCAACGGCCCGCATCCGCCGATGGGTCATCCCGGTGAGCTGGGCCCCCTCGGCCCCTTGGATCTCGAGCTGGGCCTGCCGCTGGGCCCGCCTGGCGGCCCACGCAGTGGCAGCTCTGAGCCTGACCTCCTGGGCGGGCCTAATGCCCTGTTCAATCCCTTCAACCCCCAGAGCTTCTACCCGGACTTTGCCGGGGGCTTCCCGGGGCTGCCGCTGAGCATGCTGAacctgctgccgccggcggagcGGCATcatgcggccgccgccatgcACCACTTGGGGGTGACCATGGACGAGGACTGCAAGTCGGTGGGGTCGAAGCAGTCGTCCTCGCTGGACGATGACTTCCCCGGGGCTGGCGtgggcctgccgctggccttgGCGCGGGAGGAGCAGCGGCGCAGCAGcgaattgctggctggcggctccaATGGTCCGGCCTTGGCCCAGGCCAATGGTGGCGGGCAGGATTGA
- Protein Sequence
- MSSALTLTPPHMFGLDSPLGLFPPGIDPGKLYNPLMEMSDPRDMPGGPPPFLKKKMPRPKGQHSAPRGGPPRSWTNTELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCISGPPIEMLQMGMSGGNSGSSGGGGSSSKSEKNKERKEREKEKNSNSSSSNPSGASAGSGGQSAAPPAGNGPHPPMGHPGELGPLGPLDLELGLPLGPPGGPRSGSSEPDLLGGPNALFNPFNPQSFYPDFAGGFPGLPLSMLNLLPPAERHHAAAAMHHLGVTMDEDCKSVGSKQSSSLDDDFPGAGVGLPLALAREEQRRSSELLAGGSNGPALAQANGGGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00494308; iTF_00582183; iTF_00556457; iTF_00529487; iTF_00511928; iTF_00604766;
- 90% Identity
- -
- 80% Identity
- -