Lsab011252.1
Basic Information
- Insect
- Lissocephala sabroskyi
- Gene Symbol
- -
- Assembly
- GCA_037075105.1
- Location
- JBAMCP010003280.1:2-1517[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.4e-16 1.9e-12 47.3 0.0 3 44 334 375 332 376 0.96 2 3 0.018 41 4.6 0.0 27 39 405 417 396 421 0.90 3 3 7.7e-20 1.8e-16 60.2 0.0 2 41 442 481 441 483 0.96
Sequence Information
- Coding Sequence
- TCCACAATCATAGACATCCAGCGCGACCTGCGGGGCGACACCGAAACCTGCGAGGTGACGCTCGTCGGCAAGGACGGCATCAGTGTCCGCGCCCATCTCTTCGTCCTCAGCACTTGCAGCGACCTAATGCGAAACATCCTACTAGACGTTCCCTGCGGCCAGGAAACCACCATAGTCCTGCCCGACATCCGCGGCGAGCTCCTAGATAGCATGCTCTCCTTTATTTACACGGGCGAGACCAGCCTGCCGTCGACCTATCTCACCGAATTCGTGGAGGCCATCAACCTGATGGGCATTAAGTCCGCCATCAGTTTCGAGTGCAATACCACGGCCATGAGTGCCCCCAACATCAGCGAGGGCAACTTGGCCGTGGAGACGGCCAAGTCCATTGCCGGCCTGCAAATTGCCCATGCCGAGTTgctcgaggaggaggcggTCACCAAGGTCGAAGTGGACCGCGCCATGATGGGCAGCTCCCAGCAGCCGCGGTCCCTGGAGTTCCTGGACGTCTACACCGACCAGCAGCCCAAGATCACCACCTTCTCCATCGAGCACATGAGCGGGACGACCAGCGGCAACCAATATATTCTGACCGAGAACTCCACAACATTTGCAATCACACAATCCGACCCGGCGGTGGGCAAACTAAGCGAATCCACAGGCAACGAGACCACCGATTCCGCCCACATAGTTGAGGCCGAGGACACCGATGAAGTGGATGAGTCGCAGCTGATAGAGGAGGATTACGTGGGGTCCACGGACCCTCTGATCGACATACCCGCAGAAATGGTGTCGGACGCCGAGGACGGGGACATTGACCCGGAGGACGACCTGGTCGAGgatgaggaggacgaggaggtgCCCGAAGTAAAGCTGTTCGAGATGAAGCCCAGAAAGCAGGTGGAGGTCAGGCCGCGCAACCGCCACCCGAAATACAAGAGGAACCACCTGAAGCCCAGGCCGTTCACCGACATCAAAGGCGAGATCGTCCAGGGCGGCGATGCCCTGGAATTGGCGGCCCACGCTGTGCTCTCCGAGGGCCTGAGTCTCCAGAAGGCCGCCGACCGATTTGAAATTTCGAAAACAGTGCTTTGGCGTCGCGTGCGCACGAATCCCGACTACATGAAGCACAACCGGGACAAGCCCTCGCTGTCTGAGGCCTACGAGAGGCTGAGGAAGGGCGACTCTTTGAAGAGCATCAGCCAGGACCTTAATATTCCCATGTCGACTCTGCACCGGCACAAGATGCGCTTGGCCTCGCAGGGCAGGTTGCCGGAGTTTGTGGCCTCCCGCCGCCGGGAGACGACTCCGAAGGACGAGCTGCGCGACAAGTTGGCCAAGGCGGTGCATGCTTGCATGAACGAGGGCATGTCCCAGAACCATGCGGCTAATTTGTTCGAAATACCAAAGAGCACTTTGTGGCGGCACTTGCAGCGGCACTTGGGCGAAACTGATCAGAAGGTCAAAAAGGAACTGCTCTACCAGGAGGAAACCGAGGAGGAGATACTAACTTAG
- Protein Sequence
- STIIDIQRDLRGDTETCEVTLVGKDGISVRAHLFVLSTCSDLMRNILLDVPCGQETTIVLPDIRGELLDSMLSFIYTGETSLPSTYLTEFVEAINLMGIKSAISFECNTTAMSAPNISEGNLAVETAKSIAGLQIAHAELLEEEAVTKVEVDRAMMGSSQQPRSLEFLDVYTDQQPKITTFSIEHMSGTTSGNQYILTENSTTFAITQSDPAVGKLSESTGNETTDSAHIVEAEDTDEVDESQLIEEDYVGSTDPLIDIPAEMVSDAEDGDIDPEDDLVEDEEDEEVPEVKLFEMKPRKQVEVRPRNRHPKYKRNHLKPRPFTDIKGEIVQGGDALELAAHAVLSEGLSLQKAADRFEISKTVLWRRVRTNPDYMKHNRDKPSLSEAYERLRKGDSLKSISQDLNIPMSTLHRHKMRLASQGRLPEFVASRRRETTPKDELRDKLAKAVHACMNEGMSQNHAANLFEIPKSTLWRHLQRHLGETDQKVKKELLYQEETEEEILT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00904841;
- 90% Identity
- iTF_00904841;
- 80% Identity
- iTF_00904841;