Llae013433.1
Basic Information
- Insect
- Lissagria laeviuscula
- Gene Symbol
- -
- Assembly
- GCA_030264695.1
- Location
- JARJDU010032032.1:137-2726[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7.6e-05 0.0082 16.8 6.1 1 23 163 185 163 185 0.99 2 10 0.042 4.6 8.1 3.8 2 21 193 214 192 216 0.90 3 10 0.00013 0.015 16.0 1.3 1 21 222 242 222 243 0.94 4 10 0.00017 0.019 15.6 0.4 1 23 254 276 254 276 0.95 5 10 0.00027 0.029 15.0 0.1 2 23 283 304 282 304 0.95 6 10 9.6e-06 0.001 19.6 0.0 2 23 308 329 308 329 0.97 7 10 6.7e-05 0.0073 16.9 1.2 3 23 333 354 332 354 0.96 8 10 0.29 31 5.5 1.1 5 23 366 384 365 384 0.96 9 10 3e-05 0.0033 18.0 1.0 1 23 385 407 385 407 0.96 10 10 0.00084 0.091 13.5 5.8 1 23 417 439 417 439 0.98
Sequence Information
- Coding Sequence
- atGGAAGTAGTTCAGGAATCAGAACATTATTTACCAGATAACCATGCTAAATTTGAAGCAACAgccaatgcaaatattatttctgcAAAAACGATAgaagataatattaatcatgGCTATGATGGTAACACAACTAGTGATTCAGAAAAAGAGTTGGAAATCCCATTACCTACAAGAGAAGTTCAAGAATCTGAAGTACAACAGGAAACAATAACACAAGATAACAATGAAACTCTCCACTTAAGTTCAACTGATAGCCAGTTTATTTCAGTAGATAGTTCTGATAATGAGACTGAAATTAGACCAAATGGAAATACTTCCAATAAAGAAATGTTTAACGATAATGATAGTGATAGTAATTCAGATGTTGATGTAACTTTcattgaaaatgaaacaaaactagAAGGAACTGGAGTGTCATCAAATAATCTGCAAACTGAATCGTTAACCCTTAGAGAAGCTGTCATTGAGACTGAAGAACAAATTTACCCTTGCAAGCATTGCTATGCTTGCTTTTCCACATTATTTGACTTAAATACTCACCAAAAGACCCATCAAACTAGTTCCAATAATGTAGAATGTGAACATGAACAATGCCAAAAGACTTTCTCCAGTTATAAATCAATGCGTATCCATTTGAAGTGCCACACATTACCAAAAAGACATGAGTGCCAGAAATGCAACTATAGCTTCCGTTTCGCAAAAGACCTGAAACTCCATCTTCAAGTTTGCAATATACAACTCGCCGTTCAAAACTTATTCGATTGCAAAGTTTGTAGGGAAGCATTCCCTCGTGCTTATCAACTCTTAGAACACATCCATGATCATGTCAAAGAAAAGTCTTTGATTTGCTCGGTGTGTAATGAATCGTTTATCTCGTATAATAGCCTCGTTACTCACTTAGAAATACATCCAGCAAATGAATGCTCCGAGTGTGGGGAAAGTTACGCTGATTCGAATGCTTTAGCAACTCACATGAATATCCATGACAATATTTGCCCTGATTGTGGACTAAAATTTCCAACACATTCCAGCTTTTCAATGCATCTACAGAAGCAACACCCCCTAACACAgactaatttgtttaaaagcaATGATTGTGGGGAGCATTCCAATGATTCAAATACGTACTCCGATCATAAACGACGCCATTTCGCGTGCAATGCTTGTAAGAAAAGTTTCATGCGTAAGGGAAGTCTGAAGAACCATTTGTTACTTCATTCCATTAAAGAATGTGAAGAAAGTTTGTTTTCATGTCATATTTGCAAAACTACATTTCCCGAGAAACGGAATCTCACCTGTCACATGAAAATACATACAGATTGA
- Protein Sequence
- MEVVQESEHYLPDNHAKFEATANANIISAKTIEDNINHGYDGNTTSDSEKELEIPLPTREVQESEVQQETITQDNNETLHLSSTDSQFISVDSSDNETEIRPNGNTSNKEMFNDNDSDSNSDVDVTFIENETKLEGTGVSSNNLQTESLTLREAVIETEEQIYPCKHCYACFSTLFDLNTHQKTHQTSSNNVECEHEQCQKTFSSYKSMRIHLKCHTLPKRHECQKCNYSFRFAKDLKLHLQVCNIQLAVQNLFDCKVCREAFPRAYQLLEHIHDHVKEKSLICSVCNESFISYNSLVTHLEIHPANECSECGESYADSNALATHMNIHDNICPDCGLKFPTHSSFSMHLQKQHPLTQTNLFKSNDCGEHSNDSNTYSDHKRRHFACNACKKSFMRKGSLKNHLLLHSIKECEESLFSCHICKTTFPEKRNLTCHMKIHTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -