Basic Information

Insect: Lissagria laeviuscula
Gene Symbol: salm
Assembly: GCA_030264695.1
Location: JARJDU010018190.1:768-3791[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.1 3.3e+02 2.3 0.0 2 23 6 27 5 27 0.91

2 14 2.5 2.7e+02 2.6 1.8 1 11 475 485 475 495 0.77

3 14 0.0021 0.23 12.2 0.2 1 23 656 678 656 678 0.98

4 14 0.00046 0.05 14.3 3.4 2 23 681 702 680 702 0.96

5 14 0.11 12 6.8 3.7 1 23 708 730 708 730 0.94

6 14 5.9e-06 0.00065 20.2 4.2 2 23 737 758 736 759 0.95

7 14 0.013 1.4 9.7 1.1 1 23 769 791 769 791 0.96

8 14 0.00047 0.051 14.3 3.9 2 23 797 819 796 819 0.96

9 14 0.13 14 6.6 0.1 2 23 835 855 834 855 0.95

10 14 2.6e-05 0.0029 18.2 1.3 1 20 861 880 861 883 0.93

11 14 3.4e-05 0.0038 17.8 0.3 1 23 891 913 891 913 0.99

12 14 0.00058 0.063 14.0 3.7 1 23 919 941 919 941 0.98

13 14 2.5e-07 2.8e-05 24.5 3.2 1 23 947 969 947 969 0.98

14 14 0.00054 0.059 14.1 7.5 1 23 975 997 975 998 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.1	3.3e+02	2.3	0.0	2	23	6	27	5	27	0.91
2	14	2.5	2.7e+02	2.6	1.8	1	11	475	485	475	495	0.77
3	14	0.0021	0.23	12.2	0.2	1	23	656	678	656	678	0.98
4	14	0.00046	0.05	14.3	3.4	2	23	681	702	680	702	0.96
5	14	0.11	12	6.8	3.7	1	23	708	730	708	730	0.94
6	14	5.9e-06	0.00065	20.2	4.2	2	23	737	758	736	759	0.95
7	14	0.013	1.4	9.7	1.1	1	23	769	791	769	791	0.96
8	14	0.00047	0.051	14.3	3.9	2	23	797	819	796	819	0.96
9	14	0.13	14	6.6	0.1	2	23	835	855	834	855	0.95
10	14	2.6e-05	0.0029	18.2	1.3	1	20	861	880	861	883	0.93
11	14	3.4e-05	0.0038	17.8	0.3	1	23	891	913	891	913	0.99
12	14	0.00058	0.063	14.0	3.7	1	23	919	941	919	941	0.98
13	14	2.5e-07	2.8e-05	24.5	3.2	1	23	947	969	947	969	0.98
14	14	0.00054	0.059	14.1	7.5	1	23	975	997	975	998	0.96

Sequence Information

Coding Sequence: ATGGAAGGAACCGTTGTGTGCCCGGTTTGTACGCTTTATCTCCGACCGGGAATGACCTTGCAATCTCACTTGGAATCCCATCCCAAGCAAAAAGTCATTGAAGCACTGGTTAAATTACATTCCGAGCCTCCAAAAGAAGTTGCATATTCATCATTAAATACAAATGTGGTACAAGCCAGCCAAGAACTTCCCACACAGCAGCAATCATGGATTCCGCCAACGGCCACAGTCCCATCGGCACCAAATGGAAGCTATCCCGGGCCATCATCAGGTCCATTATTACCCTCTCACCCGGTGCCTTCAACACAATCAAATTCAACTGGGCCTGTAATAGCCACTCAAGCAGGCAATCACTCCTTCTTCTATCAGCAATTCATGAGTTCGTCAGTACCGCAACCCAGCTACGTCAACCAGCAATACGTTATTCCAATGTTCAATCAACCTTTGCAGAATCCACTGATTCCAGGATATATGTATCAGCAACAGCAAATGTTTGTGACTTCAGGACCAACAATGCCGTCAATTATGCCAATGAGCACTGAGCAGGCACCGAATATTGTAGAGATCCATGACGATGATGAAAAAAACACTCCCGAATTCCCAGATTCGCCGAAGAGTGTAATTTTACCTAAtcaggaagaagaagaagatgagcTTGCAAGCAATGAGAGGCCAATGCCTGAATTGGAAAGTCAAGTTGAACAATCTCACATATCTACATCTCGAGAAGAAGAGGACCAACAAATTGAATTGGATAAATCCTGCCAAACACTCGGTGATGATCCTCCTCAGTTGCAACCGGAAGTTTCAGACGCCATGGAAAAATATGATGTGAAAGACAATGAAATAGAAACCAGTCCGAACTTTATAACGTTGACCAATCATTCAAATCAGGTTGAAGACATTGTTGGGGATGAAGCTCATCATACTTTTGACATGGACGGCATGAATCTTATCTTGGTTCATGACTTCATGCAACCCAGTCAGCAAAAGCCTGAATTAGTTGAACCTTCTGCCGCTGAAGACTATGACTATAACAGTAATGCCAGTGGATACAAGTATGAGCGTCCTAGAATTTTGATGAACATCGGCGACGGAGACGATGACAATCGCGATGAGAACATCTCGATCGACAGTGTGAACATACGAGCGGACGAAAACATGCCTCCGAGAGGAGAGCTCTCTGGTCAAGAAAGCAATGCTAGTGATGTTGCTTCCTGGTCAAGATTACAGTACCACGAAAGCAGTTCCCGTATGTCTACTGGCATGTCCACCTACGATCTCCTCGCTCGAGAAAGTTGGGAAGGTTCCGATGCTTCGGATGTAGACGGACCTCCTCCCTACCAAAGCAGAGATCCTCTTTACGAAGAAGACGATGATTTTCCTGTTTATATATCTGGCTCTTCTATGCAAGgcattgtatataaatgtaacaCATGCACAATGACATTCATGTGTCCCAAAGAACGTCGGGTACATCAGACATGCATCCATGGAGCTCCGGCAAGCAGCGCAGACTCACCAAGTACACGCGACCAAAGCCAAGGCACTTCTTTCCAGTCTCCGGCTTCGGATGACTTGGCATCTCAGAAGAAGTGCAATGTTATCGGCTCGCAGCTCTTCAAGAAGAAGGTAAAGAAGTTGGTCATCAAGCCAAAGCCTACCTTGAAGGAAACTCTAAAGACTGAAACAATCGAAAGCCCCTTCGACCACATCTTCAATAACATGATGAAAGTCGAAGATGATCAAGGCACTGCTAATCAGACAAAGACTGAAGGTTCAAAGGACCTCATATTAAAGGATTTGGGTGGCATTCCATTGCCTGCTGGTGTGCCGCCACTTCCCGGTTCCGACAAAATGATCCAACCTGCTGTCATTTGCGTCTTGTGTTGCGCTGCAATTGAAGATAACCATTCGCTAAAACAGCATCAGGCCGATGTGCACGATTTCGGCATAGATACCAAATACAAGTGCGGCTTGTGCAATGAACAATTCACCACCGAGCCGCCTTACACCGAGCATCTCAACGTACACCCACTAGAATGCCTCTTCTGTGGCAAATACTTCTATCGCTCCCACAATatgcaattgcatttaaagcGACATATGGGTATCCGACCGTACAAATGTGAGAGCTGCGACAAGCACTTTCTCACTAGGCAAAAGCTGCAGGAACACAATTACGTACACACTGGCGAGGCGCCTCTTAAATGCAATATGTGCAATGAGACCTTCAAACGATACTCGAATCTAATTCAGCATCGAAATCGGCATCATCTTATGATCAAAAAGAAGGTGAAAGATTTCATCTGCACCACTTGTGGGGACGTCTTCCATTCCAAAAAGAAACTTGCATGGCATAAAGAGATCCATGAGAATAAACCCAAATCTTGCGTGCATTGCTCGGAGAAGTTCATTCATCTCTCAAGCTTGACCCGACACGTGAGGCGGGCGCACAACGAGCGTTTTGTGCCACAAGAAGAGCGGGATCGTGAAAATGTCGAGTGTCCTATTTGCAAGGGCATTTATTTACGCAGTTCTCTTGAGACGCATATCAAGAATCACAGCGGCGCGAAGAATTACACCTGTTCAGTGTGCGATAAAGACTTTACCACCAAGTGGAACCTTAAGCTTCATAAATGGACGCACGCTGGACGGGCCCAGAAGCCATACAAGTGCGATCTATGCAAGGGGGCATTTGTACGCGAATCGGATTATACGGCACATATGAACTCACATAAGGCAATACGACCGTATACGTGTAATTACTGCGGGGCACAGTTTATACGGAAATACAATTGTCAGCGGCATGTTAAAGAGCATGAGAAAGTAAAGACATTTAACTGCAATATATGTGGAAAGACCTTCCATCGATCCTATTATCTTAATGATCACATGCGCATTCATAGTGGGATTAGACCATTCTCGTGTCACATTTGTGGCAAGACTAGCACTACGAAGAGCAATCATAATAAGCATGTCCGAATACATCATGCTAGGGAGCCTGTCAGCACTGAAAATTAA
Protein Sequence: MEGTVVCPVCTLYLRPGMTLQSHLESHPKQKVIEALVKLHSEPPKEVAYSSLNTNVVQASQELPTQQQSWIPPTATVPSAPNGSYPGPSSGPLLPSHPVPSTQSNSTGPVIATQAGNHSFFYQQFMSSSVPQPSYVNQQYVIPMFNQPLQNPLIPGYMYQQQQMFVTSGPTMPSIMPMSTEQAPNIVEIHDDDEKNTPEFPDSPKSVILPNQEEEEDELASNERPMPELESQVEQSHISTSREEEDQQIELDKSCQTLGDDPPQLQPEVSDAMEKYDVKDNEIETSPNFITLTNHSNQVEDIVGDEAHHTFDMDGMNLILVHDFMQPSQQKPELVEPSAAEDYDYNSNASGYKYERPRILMNIGDGDDDNRDENISIDSVNIRADENMPPRGELSGQESNASDVASWSRLQYHESSSRMSTGMSTYDLLARESWEGSDASDVDGPPPYQSRDPLYEEDDDFPVYISGSSMQGIVYKCNTCTMTFMCPKERRVHQTCIHGAPASSADSPSTRDQSQGTSFQSPASDDLASQKKCNVIGSQLFKKKVKKLVIKPKPTLKETLKTETIESPFDHIFNNMMKVEDDQGTANQTKTEGSKDLILKDLGGIPLPAGVPPLPGSDKMIQPAVICVLCCAAIEDNHSLKQHQADVHDFGIDTKYKCGLCNEQFTTEPPYTEHLNVHPLECLFCGKYFYRSHNMQLHLKRHMGIRPYKCESCDKHFLTRQKLQEHNYVHTGEAPLKCNMCNETFKRYSNLIQHRNRHHLMIKKKVKDFICTTCGDVFHSKKKLAWHKEIHENKPKSCVHCSEKFIHLSSLTRHVRRAHNERFVPQEERDRENVECPICKGIYLRSSLETHIKNHSGAKNYTCSVCDKDFTTKWNLKLHKWTHAGRAQKPYKCDLCKGAFVRESDYTAHMNSHKAIRPYTCNYCGAQFIRKYNCQRHVKEHEKVKTFNCNICGKTFHRSYYLNDHMRIHSGIRPFSCHICGKTSTTKSNHNKHVRIHHAREPVSTEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -