Llae003187.1
Basic Information
- Insect
- Lissagria laeviuscula
- Gene Symbol
- -
- Assembly
- GCA_030264695.1
- Location
- JARJDU010007741.1:171-3846[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.44 48 4.9 0.3 1 20 308 327 308 328 0.94 2 19 2.7 3e+02 2.4 0.2 1 23 359 381 359 381 0.86 3 19 2 2.1e+02 2.9 0.5 5 21 391 407 389 408 0.92 4 19 0.18 19 6.2 0.8 3 19 416 432 415 437 0.94 5 19 0.64 69 4.4 0.7 1 23 462 485 462 485 0.94 6 19 5.3e-06 0.00058 20.4 0.9 1 23 562 585 562 585 0.95 7 19 8.4e-05 0.0092 16.6 0.1 2 23 595 617 594 617 0.96 8 19 0.0002 0.022 15.5 2.6 1 23 619 641 619 641 0.97 9 19 0.0055 0.6 10.9 2.0 2 23 686 707 685 708 0.94 10 19 0.048 5.3 7.9 5.1 2 23 724 745 724 745 0.98 11 19 1.6e-06 0.00017 22.1 2.8 1 23 768 790 768 790 0.98 12 19 0.16 17 6.3 2.7 1 23 802 824 802 824 0.96 13 19 0.0085 0.93 10.3 0.1 3 23 834 855 833 855 0.95 14 19 0.003 0.33 11.7 0.2 1 23 877 899 877 899 0.94 15 19 0.62 67 4.5 0.3 1 23 945 968 945 968 0.89 16 19 0.032 3.5 8.5 0.3 2 23 972 994 972 994 0.95 17 19 0.00053 0.058 14.1 0.3 3 23 1017 1038 1016 1038 0.94 18 19 0.012 1.4 9.8 1.4 2 23 1050 1071 1049 1071 0.97 19 19 0.0011 0.12 13.1 0.1 1 23 1113 1136 1113 1136 0.97
Sequence Information
- Coding Sequence
- ATGGCTTCTCAAAGGGAATACTTCAACTTCCGAACGTGCTGCCGTCTCTGTCTGGAAGAGAGCTcctttagtaaattaaatatattctcaTCGAAAAATCGGGATGATCATCTCGCCGAGAAAATCAATCATGTCATCGGCATACAGGTGTCAGCGCATGATCCAATATCAACCAATCTGTGTTCTAAATGTTTTTTGGCAATTAAGGAGttcgataaatttaaatatcaatctTTGATCAATCAGGAGAAACTTGCTGGAATGCAGAGTGTACATGATGCAAGTCTTTTTAATGAAagtataataataaaagatgaaCCACTAACAGATGATGAAGACATTGTATTTGTATCAAGTGAGAGGTCTGCTAATCAACAAttgcaaatcaaaattgaGTTGACACAAAGCTCAGGGAATCTCAGAGATGATCAGCCACCAATTCTCTCACCCAATCTACCTACAACAGTCTCACCATTCCAACTACATGTTGAAGAAGAGATTGAAACATCTCAAGAACCAATGGATTCTATCCAACCAGTTATCTTGATGGAAAATGACACTCATCAAGAATATAATGGCAGTACTGCTTATCAAGCAGAGGAACAAGAAGATGGAGATGCCACTGCAGATAATGAAAATAccaatgaaattgataatgataCAGAGCCAGAGCCAGTGACCAGAACAGTGAATCAAAGAGATATAATGGATTTCGCTGCTGGCTTGCAATTGCAATCGAAAGCAGTGCACATTAATATGGAGCCTATGACAGCATCTGAATTGCAATATATCAGTAAACATGAACATCTTTACACGCAATATATAGATTTGCGGTGTTGCTGTCACAATGGGAATACGTACCCGTCGAAGAAATCTCTCCTCTTCCATTTGCAAAAGGTCGCCGGATTGTATTACGTCCCGTACACGTGTTTAACTTGTTACACGACATTCAATGGCCGTTCGCCGTTCTCCTTACATATAGCTCCTTGCAAGAGACGAGACAGTACTAATATACCGTACGCTGTAGCAAATCGCAACGAACGAGATGTCAACAAGCATCGCGTCTTTCAATCCTTCTTATGTAAACTCTGCGACGGGATATTCCGATTATATGATCTATATGTACAACATGCCGACGAGCATGTTCTCAAAGACATAGAGAATCCATGTCATTGTGGACAACTGTTTCATAATGCGAACGCCTATAAGCAGCATATACTTAGCTCATGCGTGATTCGGCCCATGTGCGATATCTGCTACAAATATTACGATACCCCAGAGGAATTCAAAGCGCATTGTACGGATGTTCATGATAATGATCCAGGACCGCAGTTCACCGTCGCTCGAGGTTTCGAACCCATTGAACTGCCATTCGCAGCCATGTATGCATGCGTTGAATGTAATCTCAAATGTCGACAGGAGATGTTCATCATTAAGCATTTACAACTCGCGCACAATTATAACCCTGAAGAGGCGAAGACCGTAGCAGCTGATTGTTTCATTGGAGTTGTGGAAAACCCTCCTGAAGCAAAGAAACAGCCTCCTCCGGTCCCGGTGATAAATACTACTACTCCAaagcttaataataataatggattGGAATTAACCAACGGCGGTGTTGAATGTCTTGAACAAGGTGGAGAGGATTATGGCAAGCATCTTAAAACGTTAGCCAATAATCGTTTTCAATGTCAGATCTGCACGAAAGAGTTTAGCAATCGATCGAATGTCATGAGGCATTTAAGTCAAGCGCATTTCCGCAATCGTCGGATGCGTTCCATTCGTTGTGGGGACTGTGACCAAACATTTAGCAACATTGAAGCTTTAACAGTCCATCTTGACACTGAGCATGCGTATTCTTGTAAAGACTGTGGCTTGAAATGTAAAACTCTGAACGAATTGGAAAAGCATCGAACTATTCATCTTAAGATTTCCTTGAAACGCGACCCACAAACGCATAATTATGAATTGAACGATTCGAATAATTCGAATCTGGACGATATGCCTCGGCTTGAGGAAGCTGTCAATCCAACAGAACGAAAATCATTGAGACTGCATTGTAAACTATGCAAGAAGTTATTTGCAACGCCGGGTGGACTGGCTGGACATTTGAAGAAACATCATCCCGAGGTGGCCTTACATAGAGACGAAGTAAATTCATTCCCGCGGAAATGCCATCACTGCGGGATTGTTATAAAGAACATTCATTCGTGGACAATGCATATGAAGAACCATACGTATGTTAATAATGAAGGTTCATCGAGTAGTAATAGTCCCGCACGTCCTGACGATACGGATTATTTCACATGTAGGAGATGCTTTAAGGTATTCGTGAATAAGGGTAATCTCAAGCAGCATATGAGAAGCCATGGTGTGATTAGTAGTCCTTCACAGAAGAAACGCTTCTTCTGTAGTATTTGTAAATTCGGATGTTCCTCACCACAGGATTGGTCGAATCATAAACTCAAGCATGTTTCGAAGATTGGCAAGAATCtgttatgtaaatattgcaagGTCTCGTTCGAGAGCGTTCCTGCATTAGAGACACACATGGCACAAGAACACGAGGAGAAAAAACCAGCGAAACTCCACAAATCGGTTGCTGACAAATCGAAATCCTCGGACATTTTTGATTGCAAGATCTGCGGGAAAGTATTACATTCACTTGAAAGTTTACGAGGTCATATTGGTTGGCATAAACGACCTGGAACGCGATGGATGCAAATCAAGGAGGAACCTCCGACACTCACTTCAGCTGAACAGACAGATCAAGAAGTACCAAAGGTGAACATTGTATTGCAAACCAGTACTACGAAGACTACAAATAGGAATTATGTCTGTATAAGCTGTCAGCATCTCTTTCCATCTTCAGTCGCTCTTCAAATACATATTACGAAAGTGCATGGAACGGCGCGATGCCcaaattgtaatatgtattttaaaacgTCTGAAATCTTGGCTGATCATGTCCGACAATATCATGTTAAAGGTGAACCAAATCTATCTCCAATTTCTCCGATGgtcaaaaagaaaagtaattatgAGTTTTGTAAAATCTGTGGACAAGAGTTCGATGGGTTGAACCAATTGCGCAAGCATATGGGTATCAATCATCCTGAAATTCCCTTCATTCCTAAAGGCTGCGTCGTATGTCCTTATTGTAAGCGCAGATTCCTTAACACATGCGCTCTTGCCAGTCATGTACGAAAACATCAACGCGATGGAGATATATTGCCAAGATATACGCCTAAGGGTAAGGCGTCTTTGACTCCTGCACTTAAACCAATCAAACCACATCCTGCCCCTACAGTTACTGCAACGCCTGttagttataaatatcaatgtgCTATTTGTCAACAAGGTTTTGACACCGGATCAGATATGCGAACTCATATCATTAAAGCGCATccgttttaa
- Protein Sequence
- MASQREYFNFRTCCRLCLEESSFSKLNIFSSKNRDDHLAEKINHVIGIQVSAHDPISTNLCSKCFLAIKEFDKFKYQSLINQEKLAGMQSVHDASLFNESIIIKDEPLTDDEDIVFVSSERSANQQLQIKIELTQSSGNLRDDQPPILSPNLPTTVSPFQLHVEEEIETSQEPMDSIQPVILMENDTHQEYNGSTAYQAEEQEDGDATADNENTNEIDNDTEPEPVTRTVNQRDIMDFAAGLQLQSKAVHINMEPMTASELQYISKHEHLYTQYIDLRCCCHNGNTYPSKKSLLFHLQKVAGLYYVPYTCLTCYTTFNGRSPFSLHIAPCKRRDSTNIPYAVANRNERDVNKHRVFQSFLCKLCDGIFRLYDLYVQHADEHVLKDIENPCHCGQLFHNANAYKQHILSSCVIRPMCDICYKYYDTPEEFKAHCTDVHDNDPGPQFTVARGFEPIELPFAAMYACVECNLKCRQEMFIIKHLQLAHNYNPEEAKTVAADCFIGVVENPPEAKKQPPPVPVINTTTPKLNNNNGLELTNGGVECLEQGGEDYGKHLKTLANNRFQCQICTKEFSNRSNVMRHLSQAHFRNRRMRSIRCGDCDQTFSNIEALTVHLDTEHAYSCKDCGLKCKTLNELEKHRTIHLKISLKRDPQTHNYELNDSNNSNLDDMPRLEEAVNPTERKSLRLHCKLCKKLFATPGGLAGHLKKHHPEVALHRDEVNSFPRKCHHCGIVIKNIHSWTMHMKNHTYVNNEGSSSSNSPARPDDTDYFTCRRCFKVFVNKGNLKQHMRSHGVISSPSQKKRFFCSICKFGCSSPQDWSNHKLKHVSKIGKNLLCKYCKVSFESVPALETHMAQEHEEKKPAKLHKSVADKSKSSDIFDCKICGKVLHSLESLRGHIGWHKRPGTRWMQIKEEPPTLTSAEQTDQEVPKVNIVLQTSTTKTTNRNYVCISCQHLFPSSVALQIHITKVHGTARCPNCNMYFKTSEILADHVRQYHVKGEPNLSPISPMVKKKSNYEFCKICGQEFDGLNQLRKHMGINHPEIPFIPKGCVVCPYCKRRFLNTCALASHVRKHQRDGDILPRYTPKGKASLTPALKPIKPHPAPTVTATPVSYKYQCAICQQGFDTGSDMRTHIIKAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -