Basic Information

Insect: Lissagria laeviuscula
Gene Symbol: Clamp
Assembly: GCA_030264695.1
Location: JARJDU010038826.1:8286-10191[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5.3e-06 0.00057 20.4 2.6 1 23 114 136 114 136 0.99

2 8 0.00022 0.024 15.3 0.8 1 23 170 193 170 193 0.96

3 8 6.1e-05 0.0066 17.1 3.0 1 23 335 357 335 357 0.97

4 8 3.6e-06 0.00039 20.9 0.2 1 23 363 385 363 385 0.98

5 8 1e-06 0.00011 22.7 1.5 1 23 391 413 391 413 0.99

6 8 1.1e-07 1.2e-05 25.6 1.2 1 23 419 441 419 441 0.98

7 8 9.7e-06 0.0011 19.6 3.3 1 23 447 469 447 469 0.98

8 8 8.3e-06 0.00091 19.8 0.6 1 23 475 497 475 497 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5.3e-06	0.00057	20.4	2.6	1	23	114	136	114	136	0.99
2	8	0.00022	0.024	15.3	0.8	1	23	170	193	170	193	0.96
3	8	6.1e-05	0.0066	17.1	3.0	1	23	335	357	335	357	0.97
4	8	3.6e-06	0.00039	20.9	0.2	1	23	363	385	363	385	0.98
5	8	1e-06	0.00011	22.7	1.5	1	23	391	413	391	413	0.99
6	8	1.1e-07	1.2e-05	25.6	1.2	1	23	419	441	419	441	0.98
7	8	9.7e-06	0.0011	19.6	3.3	1	23	447	469	447	469	0.98
8	8	8.3e-06	0.00091	19.8	0.6	1	23	475	497	475	497	0.98

Sequence Information

Coding Sequence: ATGTTCGACCCGAACACCATCACCACGCAGCAGTCGCAGGTGCAATACGCGccgcaacagcaacaacagacCGACTCCAAGGAGGTAGTAAAGATACAAACGCAGCAGccacaacagcagcagcaggacAACAAGCAGCAGACGTTCTCCGGCTTCTGCTATGCGAACGTGAACATGATACACAAAATTGAACCCAACGCCGATGCCGTCACGCACAACTCCACCGTCAACATGTCCCAACTAGCTGATGACAAGTGCTACATCACGCAACCATTCAGCTATAACTATGCTCTAGTTAATCAAATGTCTTTGGCGCAGACGAATATTGGTAACATCACGTTTAAATGCGACGTGTGCGGACTCATGTTTGCACATCTGAGTCTGCTCAATCATCATAAGCGGATACACCAGCAGCCACAACAACAGCAGGAAGGTACACAACAGATCACTGTGCAAGTGCAACAGCAGCCTCAGCAGATACAAATTGTGTCTGCTGATAGAATAAGGTACTCGTGCGACGAGTGCGGATTGACATTCCTCACACAAAACGACCTGAAGACACATCGCATGCAGACGCATCAAACAGCCacacagcagcagcaacatcAACAACAGCAGCACGCTCAGAATTCGCTTAAGGTGAAGAACTGCGAGACTTGCGGTACGCCATTGCCGCAAGACTCGAACAAGAAGCGCGCTGTGATGAAGGTAAAATGTGAGACTTGTCTTTCGGCTGAAGCTATACAGCCGCAGCAGATATTTGTGGTGGCGTCAGCACCGGCGGAAACTGCTACCGTCAAGTTTGAGGAAACGACAGGTACACAGACGCAAGCTGCAGGACAACAAGTGGGCTCGCAGAACACGATACCAATTGGAGTGAAGAACCACCATCCGGTGAAACGTCGTGGGGTAGCGTCCGTGACGAAATGCACGAAGTGTAATGGCAGCGGGATCATCTTCATCGGTGGATCGAAGAATCAACAGAATAGTGCAGAGAAACCATTTCATTGCAACATCTGCAATGGCTCGTTCTCAAGGTATTCGTCATTGTGGAGTCACAAGAGGCTACATTCGGGAGAGAAGAATTTTAAGTGTAATATATGTGGGCTAGCGTTTGCGAAAGCTGCCTATCTTAAGAACCATTCACGAATTCATACGGGAGAGAAACCTTATCGATGTAACGTATGCGGCATGCAATTCTCACAAAGCCCGCATCTCAAGAACCACGAACGGATACATTCTGGTGAACGGCCGTATGTGTGCGAAGTATGCGATAAATCCTTTGCTAGGCATTCCACTCTTTGGAATCATCGAAGGATCCACACGGGGGAGAAACCCTATCGATGTGAAATATGCGGCAGTTGTTTTAATCAAGCTACGCATTTGAAGAATCATGCAAAGGTACACAGTGGTGAAAAACCCTTTAAATGTGACATTTGCTCGGTGGGTTTCTCCGATAGGTTTGCATTGAAACGCCATCGGAATATCCACGAAAAGTATGGAAGGACAAAACCAGCTGCCAGCAATGCCAATAACACCACAACCGCGAATAATGCTAGTACACAGGGTGCTGCGAATAATTCGGCTGGTGGTCAAACCCCACAGAATCCTAATGCGAGTCAGGATTCAGTGGCTACGACGCAGGATCAAGAGCAAGAGAACGCGACTGCCGAGGTGATGGTGGTCGAGCCTAAGTATGAGGCACCTGATATGACGGAAATGTCCGAACTGCAAGTGCAACTGTCCTAA
Protein Sequence: MFDPNTITTQQSQVQYAPQQQQQTDSKEVVKIQTQQPQQQQQDNKQQTFSGFCYANVNMIHKIEPNADAVTHNSTVNMSQLADDKCYITQPFSYNYALVNQMSLAQTNIGNITFKCDVCGLMFAHLSLLNHHKRIHQQPQQQQEGTQQITVQVQQQPQQIQIVSADRIRYSCDECGLTFLTQNDLKTHRMQTHQTATQQQQHQQQQHAQNSLKVKNCETCGTPLPQDSNKKRAVMKVKCETCLSAEAIQPQQIFVVASAPAETATVKFEETTGTQTQAAGQQVGSQNTIPIGVKNHHPVKRRGVASVTKCTKCNGSGIIFIGGSKNQQNSAEKPFHCNICNGSFSRYSSLWSHKRLHSGEKNFKCNICGLAFAKAAYLKNHSRIHTGEKPYRCNVCGMQFSQSPHLKNHERIHSGERPYVCEVCDKSFARHSTLWNHRRIHTGEKPYRCEICGSCFNQATHLKNHAKVHSGEKPFKCDICSVGFSDRFALKRHRNIHEKYGRTKPAASNANNTTTANNASTQGAANNSAGGQTPQNPNASQDSVATTQDQEQENATAEVMVVEPKYEAPDMTEMSELQVQLS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00902460;
90% Identity: -
80% Identity: -