Basic Information

Insect: Lissagria laeviuscula
Gene Symbol: Bcl11a
Assembly: GCA_030264695.1
Location: JARJDU010005355.1:48596-51243[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.081 8.8 7.2 1.0 2 23 183 203 182 203 0.85

2 11 5.9e-06 0.00064 20.3 0.9 1 23 209 231 209 231 0.97

3 11 4.2e-05 0.0045 17.6 2.3 1 23 237 259 237 259 0.95

4 11 3.8e-06 0.00042 20.8 1.1 1 23 265 287 265 287 0.99

5 11 1.3 1.4e+02 3.5 0.0 5 20 324 339 323 341 0.92

6 11 0.29 32 5.5 2.3 2 23 406 426 405 426 0.79

7 11 7.6e-06 0.00082 19.9 3.4 1 23 432 454 432 454 0.94

8 11 1.3e-05 0.0014 19.1 0.6 1 23 460 482 460 482 0.95

9 11 6.7e-05 0.0073 16.9 5.0 1 23 488 510 488 510 0.98

10 11 8.7e-08 9.5e-06 26.0 0.6 1 23 516 538 516 538 0.98

11 11 3.9e-05 0.0043 17.7 0.7 1 21 544 564 544 565 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.081	8.8	7.2	1.0	2	23	183	203	182	203	0.85
2	11	5.9e-06	0.00064	20.3	0.9	1	23	209	231	209	231	0.97
3	11	4.2e-05	0.0045	17.6	2.3	1	23	237	259	237	259	0.95
4	11	3.8e-06	0.00042	20.8	1.1	1	23	265	287	265	287	0.99
5	11	1.3	1.4e+02	3.5	0.0	5	20	324	339	323	341	0.92
6	11	0.29	32	5.5	2.3	2	23	406	426	405	426	0.79
7	11	7.6e-06	0.00082	19.9	3.4	1	23	432	454	432	454	0.94
8	11	1.3e-05	0.0014	19.1	0.6	1	23	460	482	460	482	0.95
9	11	6.7e-05	0.0073	16.9	5.0	1	23	488	510	488	510	0.98
10	11	8.7e-08	9.5e-06	26.0	0.6	1	23	516	538	516	538	0.98
11	11	3.9e-05	0.0043	17.7	0.7	1	21	544	564	544	565	0.94

Sequence Information

Coding Sequence: ATGAGTAATAGCAGTAATTTTGACCCCAACCCTTATTTTAATCATGATATGGACAGATTATGTATTGTTTGTAGCTTAAAGATAGCAAAATCTCAAGCATCATATTCTATTCATGAAGAACTATTGGAAACAGAACCAAAATTAAAGGTTCATGATGCTTTGCAACTAATTTCAAatGAAAGTAACTTTCAAAATGGTCCACAAAAGATTTGTCAATTTTGTTACAATAATACTTCAGCAGCAGTCAGGTTTCAAGAATTGTGTAATAAATCAGTTTTCTATCTAGAATCTTATCTGCAGCAtcaagaagaaatgaaaaattttatcaaagtgGAGAATCCTGATAGTGATATAGCCATGGATGATAATGTTAGCATAAAACTAGAAGAGATAACCGTAGATGAGATGTCATTATTATCACCTGAATCAATGACAACAATGAATACAGAAAGTTCAAGCATTGATGAAAAGCCATCAACAATtacaaaagcaaataatgtAGAAGAAAGTGAGAAACAAGTTACTGCCAATGGtgttattaaagttaaatgcaaatattgtcagaaatattatagagataGTTATATCGCTGTCCATCGACGCTTGCACACTGGTGAAAAGCCCTACAAATGCAAAGTTTGTGATAAAAGATTcacgcaaaTCATTGAACTTAAAAAGCATGGAGTTACACATACAGATAAGCGGGACTATTTATGTAATGTATGTGGAAAGTCATTTAAACTTCAATCAACATTACATCTACATTCTAAGATCCACACAGGTGAAAGGAACTATAAATGCCAaatttgtggaaaaatattcaatgaacGAAAGACTCTCGAGGATCATTACAGCACTCATTCAGGTGAAAATCCTTTGACATGTGAAgAAAGTAACTTTGAAAATGGTCCACAGAAGATTTGTcagttttgtttcaataataCTTCAGCAGCAGTCAGATTTCAAGAAATGTGTAATAAATCAGTTGCTTATCTAGAATCTTATCAGCAGCAtcaagaagaaatgaaaaatatattcaaagcAGAGAATCCTGATAATAAAATAGCCATGGATGCTATGCCAGTATCACCTGAATCAATAACAACCATGAATGCAGAAAGTTCTAGCATTGATGAAAAGCCATTGACAAATATACAAGCAAATCGTTTAGAAGAGAATGAGAAACATGTTACTGCCAATggagttattaaaattaaatgcaaatattgtcATAAGTATTATAGAGATACTTATATCGCCGTTCATCGGCGCTTGCACACTGGTGAAAAGCCATACAAATGCAAACTTTGTGATAAAAGAttcaaGCATGCTACTGAACTTAAAAAGCATGGAGTTTCACATACAGATAAGCGCGACTATTTATGTAATGTATGTGgaaaatcatttaaacttCAATCAGCATTATATTCACATTCAAAGATCCACACGGGTGAAAGGAACCATAAATGCCAAATTTGTGGAAAAATGTTCAGAGAacgaaaaatgttaaatgatCATTACTGCGTCCATTCAGATGAAAAGCCTTTTACGTGTGAAGTGTGTGGAAAAGGTTTTCCATCTAAAAAATATCTCCGACAGCATATGATAACTCATGAAGAAGTTAAGAGACATGAATGTCAAATATGCGGAAATCGTTTTACTCAAGCACATTCTTTAAGGACTCATATAGCTAGATATTGTAAAGGAATAGCTAATGAAAATAGCTAG
Protein Sequence: MSNSSNFDPNPYFNHDMDRLCIVCSLKIAKSQASYSIHEELLETEPKLKVHDALQLISNESNFQNGPQKICQFCYNNTSAAVRFQELCNKSVFYLESYLQHQEEMKNFIKVENPDSDIAMDDNVSIKLEEITVDEMSLLSPESMTTMNTESSSIDEKPSTITKANNVEESEKQVTANGVIKVKCKYCQKYYRDSYIAVHRRLHTGEKPYKCKVCDKRFTQIIELKKHGVTHTDKRDYLCNVCGKSFKLQSTLHLHSKIHTGERNYKCQICGKIFNERKTLEDHYSTHSGENPLTCEESNFENGPQKICQFCFNNTSAAVRFQEMCNKSVAYLESYQQHQEEMKNIFKAENPDNKIAMDAMPVSPESITTMNAESSSIDEKPLTNIQANRLEENEKHVTANGVIKIKCKYCHKYYRDTYIAVHRRLHTGEKPYKCKLCDKRFKHATELKKHGVSHTDKRDYLCNVCGKSFKLQSALYSHSKIHTGERNHKCQICGKMFRERKMLNDHYCVHSDEKPFTCEVCGKGFPSKKYLRQHMITHEEVKRHECQICGNRFTQAHSLRTHIARYCKGIANENS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -