Basic Information

Insect: Lissagria laeviuscula
Gene Symbol: -
Assembly: GCA_030264695.1
Location: JARJDU010027523.1:1-1490[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2e-05 0.0022 18.6 0.8 1 20 133 152 133 153 0.96

2 8 7.2e-05 0.0079 16.8 0.4 1 23 161 183 161 183 0.97

3 8 6.2e-07 6.7e-05 23.3 1.2 1 23 189 213 189 213 0.98

4 8 3.2e-07 3.5e-05 24.2 0.4 1 23 219 241 219 241 0.96

5 8 6e-06 0.00066 20.2 2.0 1 23 247 269 247 269 0.95

6 8 1.3e-05 0.0014 19.1 2.6 1 23 275 297 275 297 0.97

7 8 5.1e-05 0.0055 17.3 3.8 2 23 304 325 303 325 0.96

8 8 2.5e-08 2.8e-06 27.7 1.3 1 23 331 354 331 354 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2e-05	0.0022	18.6	0.8	1	20	133	152	133	153	0.96
2	8	7.2e-05	0.0079	16.8	0.4	1	23	161	183	161	183	0.97
3	8	6.2e-07	6.7e-05	23.3	1.2	1	23	189	213	189	213	0.98
4	8	3.2e-07	3.5e-05	24.2	0.4	1	23	219	241	219	241	0.96
5	8	6e-06	0.00066	20.2	2.0	1	23	247	269	247	269	0.95
6	8	1.3e-05	0.0014	19.1	2.6	1	23	275	297	275	297	0.97
7	8	5.1e-05	0.0055	17.3	3.8	2	23	304	325	303	325	0.96
8	8	2.5e-08	2.8e-06	27.7	1.3	1	23	331	354	331	354	0.97

Sequence Information

Coding Sequence: atggaTAATATTGTGACTTGTCCACAATGTGCAGGAACACTTGCAGCTGGCTCAAGTCGTTTAGTACAAGATTCTTGTGGTCATAAGAAGTGCAGATTGTGCCTTGTAAATGATGAGAATAGTTGTAAGCAATGTCTTCAGGAGTCACCTAGTTACAATGAACCAATTGACTGTCATACAGCAGTTATAACATACCAAAAAAAGACTGAAAAAAGTGATGATATTAAATCGGAtgtatttgttgaaaataatgCAGAGCAACATAAAGCAGCAATAGAAAATAGACCACCACAAGGCACAACAATTAAAGGCAAGAAATGTGTAAATAAGACTATTGCTTCAAAAGGTATACAAAATCAACATAGTCATGTAGCATATAATGAAGGAagcaatgaatttaattgcaatatatgtAATAGGAGTTTTACTGCAAAATCTCAATTACGGTACCATATATATTGCAATGGGGATAAGAAACCATTTGAATgtgatatttgtaataaagGATTCATAGCAAGATCACATTATGCAACACATTTATTAGCTCACCAAAATTTGAAACCATATAAATGTACTGCTCCTGAATGTGGCAAAACTTTTTATgaaagaagtaaattaaatcGACATCGATTAACACACACAACATCAAGGCCATTTGAGTGTCCAGAGTGtggaaaaacttttaaaattaaagaaaacttaCGTACACATTCCTTAATACATAAGAATGAAAAACCTTACAGTTGCATTGAGTGTGGTCTTAAATTTAGTCattcatcaaatttaaagaaacattTGTCAGTTCATACATCTGATAAGTCACATATGTGTGATCAATGTGGCAagcgttttaaattaaaatgggCGCTAACATTACATCGACGATCTCATTCTAAGAGTCGACCCAATCAATGTTCAACATGTCACAAATCATTTGTCCATAATAAAGATCTAGTGCGACATGAATTGATTCATGCAGAGACTAAAGGCTTTCGCTGTGGCATATGTGGCACTACTTTCAAAcgaaaagataatttaaatcgcCACGCACGTAACACACATCCCGGCAAGAAGccgcaaattataaaatgtgttGACAATCCTAACGCTATCAAAGTTATAACGGCAAAACCGACTGCGGTGGATCAGGATAATAGCCGTCCTGCCACACCAG
Protein Sequence: MDNIVTCPQCAGTLAAGSSRLVQDSCGHKKCRLCLVNDENSCKQCLQESPSYNEPIDCHTAVITYQKKTEKSDDIKSDVFVENNAEQHKAAIENRPPQGTTIKGKKCVNKTIASKGIQNQHSHVAYNEGSNEFNCNICNRSFTAKSQLRYHIYCNGDKKPFECDICNKGFIARSHYATHLLAHQNLKPYKCTAPECGKTFYERSKLNRHRLTHTTSRPFECPECGKTFKIKENLRTHSLIHKNEKPYSCIECGLKFSHSSNLKKHLSVHTSDKSHMCDQCGKRFKLKWALTLHRRSHSKSRPNQCSTCHKSFVHNKDLVRHELIHAETKGFRCGICGTTFKRKDNLNRHARNTHPGKKPQIIKCVDNPNAIKVITAKPTAVDQDNSRPATP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -