Llae013654.1
Basic Information
- Insect
- Lissagria laeviuscula
- Gene Symbol
- -
- Assembly
- GCA_030264695.1
- Location
- JARJDU010032547.1:238-1485[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.6e-06 0.0004 20.9 1.8 1 23 119 141 119 141 0.99 2 10 0.00015 0.016 15.9 0.6 1 23 147 169 147 169 0.98 3 10 8.4e-06 0.00092 19.8 3.1 1 23 175 197 175 197 0.98 4 10 6.7e-05 0.0073 16.9 2.0 3 23 211 231 209 231 0.95 5 10 0.00022 0.024 15.3 3.0 1 23 237 259 237 259 0.98 6 10 6.2e-05 0.0067 17.0 4.2 1 23 265 287 265 287 0.98 7 10 1.8e-07 2e-05 25.0 0.1 1 23 293 315 293 315 0.98 8 10 1.8e-06 0.0002 21.8 0.2 1 23 321 343 321 343 0.98 9 10 0.0023 0.25 12.1 2.0 1 23 349 368 349 368 0.85 10 10 1.5e-05 0.0016 19.0 0.3 2 23 375 396 374 396 0.96
Sequence Information
- Coding Sequence
- ATGTGCGTTCAATGCATTCTCCAATGTAGCCGAGCATACACATTCAAACAATTATGCGAAAAGTCAGAAACAATTCTGCGCACATTCCTCTCCCCCGAATTTCAAATccaattaaaagaatatacaGAAGTAAAACCAGATGCTGAACAGACATCAATATTGTCTTCGGAATTGCCGGATGTTTTAGAAGATGATGAAATGCCAACAGAATTAGTCGAATACGATGAAGCCACAACCGAATATTTCAATATGGAAAATGTGACTCTCACCGTTGAAGAAGCCACCGAGATACAAGACCCGGACGAAATTTCCAAGTCCGAACCAGAAGAAGAACgaaacaacatcaacaacgatttcaaatgtaaaaaatgCGAGCAAAGATTCAGTTTGAAGGTTGACCTGAAAGTGCATATGATGTCGCATCCCAAAGAACTCGAATATAAATGCGAAATATGTCAGAAATCGTTTGCCGAAGCGCGCATTCTCAAACGTCATTCGAAAATCCATCTGGCAAAGAAGCCGCATCAATGTGATCAATGCGATATGTCTTTTGCCGAGAGTTCCAATCTTAgtaaacataaaaagaaacataCTGGAGAGTTGCGGAATATTATAGGTAAACCGCATTTATGCTCAGTATGCGGACGAGCATTCAAATGGTCATCTTCCTTGTCCAAGCATATGAAGTATCACACGGGTCACAAGCTTCATACTTGCCAGTTTTGTACAAAGCAGTATGTGGAAGCTCGTAGTTTGAAAATCCATATGCGATCGCATACTGGCGAACGACCATATAGTTGTCCAGTATGTTGTAAGAGTTTTACACAGGTTTGCAATCTTGAGAAACATTTGCGTGTACATACCGGTGAAAAACCGTATGCATGTCCTGTTTGTGGAAAAGGATTTACACAAAGTGGATATGTTAGTATTCACATGCGAACGCATACTGGTGAAAGGCCTTATATTTGTCAAACCTGTGGTAAAGCTTTTGCTGGTTCGAATACTTTAACAATTCACCAACGTATTCATACTGGAGAGAAGCCATATTTGTGCAATATTTGTGGGAAACGATTTAGTCGTCTCAAAGCTCATCAGCGATTGCATGCACTTGTTAAACTCGTGCCTTGTAAGATATGCGGACATGCTTTTGGTAGGCCTGAAGAGTTGGTGGAACACATGCATAGCCATGCTGAGGATACTGTTAAGGTTTCCAAAGTTGAAACTGTGCAAATATCGGACTTAttgtag
- Protein Sequence
- MCVQCILQCSRAYTFKQLCEKSETILRTFLSPEFQIQLKEYTEVKPDAEQTSILSSELPDVLEDDEMPTELVEYDEATTEYFNMENVTLTVEEATEIQDPDEISKSEPEEERNNINNDFKCKKCEQRFSLKVDLKVHMMSHPKELEYKCEICQKSFAEARILKRHSKIHLAKKPHQCDQCDMSFAESSNLSKHKKKHTGELRNIIGKPHLCSVCGRAFKWSSSLSKHMKYHTGHKLHTCQFCTKQYVEARSLKIHMRSHTGERPYSCPVCCKSFTQVCNLEKHLRVHTGEKPYACPVCGKGFTQSGYVSIHMRTHTGERPYICQTCGKAFAGSNTLTIHQRIHTGEKPYLCNICGKRFSRLKAHQRLHALVKLVPCKICGHAFGRPEELVEHMHSHAEDTVKVSKVETVQISDLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -