Basic Information

Insect: Lissagria laeviuscula
Gene Symbol: -
Assembly: GCA_030264695.1
Location: JARJDU010021034.1:1118-3451[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.13 14 6.6 0.3 1 21 103 123 103 124 0.92

2 14 0.00046 0.05 14.3 1.1 1 20 134 153 134 154 0.94

3 14 0.036 3.9 8.3 0.3 1 20 162 181 162 184 0.91

4 14 4.3e-06 0.00047 20.7 2.7 2 23 191 212 191 212 0.98

5 14 2.4e-06 0.00026 21.5 1.7 1 23 323 345 323 345 0.97

6 14 0.0045 0.49 11.2 0.2 1 21 349 369 349 370 0.94

7 14 0.00024 0.026 15.2 1.6 1 19 416 434 416 438 0.94

8 14 0.16 18 6.3 1.6 1 23 443 466 443 466 0.92

9 14 2.6e-05 0.0028 18.2 1.4 1 23 472 494 472 494 0.97

10 14 4.8e-05 0.0052 17.4 3.5 2 23 502 523 501 523 0.97

11 14 0.00025 0.028 15.1 2.3 3 23 531 551 529 551 0.97

12 14 2.8e-06 0.00031 21.3 0.2 1 23 557 580 557 580 0.97

13 14 0.017 1.9 9.4 0.5 1 23 592 614 592 614 0.94

14 14 0.0026 0.28 11.9 0.1 2 20 712 730 711 733 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.13	14	6.6	0.3	1	21	103	123	103	124	0.92
2	14	0.00046	0.05	14.3	1.1	1	20	134	153	134	154	0.94
3	14	0.036	3.9	8.3	0.3	1	20	162	181	162	184	0.91
4	14	4.3e-06	0.00047	20.7	2.7	2	23	191	212	191	212	0.98
5	14	2.4e-06	0.00026	21.5	1.7	1	23	323	345	323	345	0.97
6	14	0.0045	0.49	11.2	0.2	1	21	349	369	349	370	0.94
7	14	0.00024	0.026	15.2	1.6	1	19	416	434	416	438	0.94
8	14	0.16	18	6.3	1.6	1	23	443	466	443	466	0.92
9	14	2.6e-05	0.0028	18.2	1.4	1	23	472	494	472	494	0.97
10	14	4.8e-05	0.0052	17.4	3.5	2	23	502	523	501	523	0.97
11	14	0.00025	0.028	15.1	2.3	3	23	531	551	529	551	0.97
12	14	2.8e-06	0.00031	21.3	0.2	1	23	557	580	557	580	0.97
13	14	0.017	1.9	9.4	0.5	1	23	592	614	592	614	0.94
14	14	0.0026	0.28	11.9	0.1	2	20	712	730	711	733	0.92

Sequence Information

Coding Sequence: ATGGAAACGCCGGATTTCCTAGTGCAGGAGGAATCCCATTATGAGGTGGTGAATACAGTTTATGGTGAAGATGTAGGTAACACAGAATATACTCCATATGTAGTCTCCCATGTAATCCTAGGAAATTCGATTTATGATGGTAATAGGCCACCACCACTTTACATTAAAGTCGAACAAGCTGATCAAAGTGATGAAGTTGAACAAATTCAATGTGAAGTAGAACCAACAACAGATGCAACTGATGATGaaaaTGTAGCAGTAGAAGCATTAAGACAACTTGGTGGGAGCAGGCCTAAAATTGAAGGTCACTTTTGTCCTCATTGTAAAGTCTTATCAAACACTCAACAGGAGCTAGAGGAGCATATAGAAGTATGTGATAAAGCACCAATGAATATATCGCATATTTGTCAATTTTGCAATGAAGTATTCGAGAGGAAACATGATTTGAACAATCATTTAGTTTGTCATGCAGTGAGCAGACCACATGCATGTCGAATCTGTGGCAgtctttttatacaaaaacaagATCTGTTGGATCATATGCCTAGTCATGGGTTAAGCCATGTAAACACTTGCAAACATTGTGGAAAGCAATTTACAAGAGGATCAGCACTCACTAATCATTTGAAGATACATAATTATCAGCCTGGACGTGCGCTCGTCGATCGGATCTCTGATACAAATACTTTAGAAGACATTCTAACTGGTAATTCAGATCCTGAGCTGCAATCTGTGAACAAAACACAGAAGATAACATTACCTAGCATTACTAATATCACAATTGGTAATGCAAGTAGTTCAATGGCAAACACTTGGgctttaaattatgaatctgAGAATTATAATGGCATGAATTTATCGGATATAAATCCGAATTTGTCGGATAAATTGGAAGACGATGATGATAGAAATATGTTTGTTACGGTTGAGAATAGCCGGCAGTCACAGGAAAAAGGCCAACGACCATATGcttgtaataaatgcaataaacgtTTTAATCGAGAGAAGGCATTGATGAATCACATGAATCAACATCAGCATTTGTTTTCATGCGATCGATGCGAACAGAATTTTGGGAATGCTACGACTTTGGAAAAGCATCTTTTGTATTGTGGGAATAAGCCGACATTAAAGTCGATCAAGCCTGAAAATGGTCTTAATAATTCGAAAATTGAGAGAGGTTTGAAGCGAACTGCAGATACTGAAGGATTCGATATtaatgcatacaataaattgtataatagaCATGTATGCGATCAATGTAATAAAGGCTTCACAACGAAACAGAAGCTCTTTCGCCATGCATGGATTCATCGCAAGAAGGCATTCTTCTGTGAATATTGCTCGTTGCGATGTGACACCGAGAAGGAGCTGGATCAACATCGAATTGCAATGCATAAATCTGGATCGCCATATGACTGTACTGAGTGTGGTAAAAATTTCTGCTCGCGGCAAGGTCTGTGGGAACATAGTAGGATCCATGCCAAAGACCCAAACTACCTCCGCTGTGAAGAATGCCATAAAAGTTTCACGAGCAGACAGGGTTTCCTCATCCACAAACGCACTCATTCCAACGAACGCCCGTATGGCTGCAGATATTGCACCAAAAGTTTCTGCGACGGTGGGTCTCTCCGAAAACACGAACGCATTCACACCGGCGAACGTCCATACGCCTGTCccatttgcaataaaagctTCAATCAGAAAGTCGTCCTGCGTGAACATGTGCGCTCCCTGCATGCATCTAATGCTCAACCAGATGAAACCGGACAATTTCCATGCGTACTCTGCGACGTCGTCTGCAACGACAAAGACGATCTTAGTATGCATTTTGTTAAGCATAGTGATGAACTTGTATCGCTTGCAAAAGACGCTTCTAAGAGCAATATCGCTGGGAAAGTACAGTTGGCGAGTGTGATTCCTAAATCACAGGTCACAAGGAAATGTGTACCACATACAATCGTCTCGTGTGAGATGGCTGTCGATGAGCACGATGCTGGAAATCGTGAGGATGATGTGGATGAGCCTACACAGTTTGTGATGATAACTGGTGAGGAAGCGGATATTCCGAACGCATCGAAACTGAAAATGGAGTGCGTTATTTCGGAGGAAAGTGAACCTGATGCTGGCTTGGAATGTGACTTATGTGGTGTGCTGTTTAAAACGAAAGAGGATCTTACTTATCACATTCCCATTCATATATAA
Protein Sequence: METPDFLVQEESHYEVVNTVYGEDVGNTEYTPYVVSHVILGNSIYDGNRPPPLYIKVEQADQSDEVEQIQCEVEPTTDATDDENVAVEALRQLGGSRPKIEGHFCPHCKVLSNTQQELEEHIEVCDKAPMNISHICQFCNEVFERKHDLNNHLVCHAVSRPHACRICGSLFIQKQDLLDHMPSHGLSHVNTCKHCGKQFTRGSALTNHLKIHNYQPGRALVDRISDTNTLEDILTGNSDPELQSVNKTQKITLPSITNITIGNASSSMANTWALNYESENYNGMNLSDINPNLSDKLEDDDDRNMFVTVENSRQSQEKGQRPYACNKCNKRFNREKALMNHMNQHQHLFSCDRCEQNFGNATTLEKHLLYCGNKPTLKSIKPENGLNNSKIERGLKRTADTEGFDINAYNKLYNRHVCDQCNKGFTTKQKLFRHAWIHRKKAFFCEYCSLRCDTEKELDQHRIAMHKSGSPYDCTECGKNFCSRQGLWEHSRIHAKDPNYLRCEECHKSFTSRQGFLIHKRTHSNERPYGCRYCTKSFCDGGSLRKHERIHTGERPYACPICNKSFNQKVVLREHVRSLHASNAQPDETGQFPCVLCDVVCNDKDDLSMHFVKHSDELVSLAKDASKSNIAGKVQLASVIPKSQVTRKCVPHTIVSCEMAVDEHDAGNREDDVDEPTQFVMITGEEADIPNASKLKMECVISEESEPDAGLECDLCGVLFKTKEDLTYHIPIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -