Basic Information

Insect: Lissagria laeviuscula
Gene Symbol: -
Assembly: GCA_030264695.1
Location: JARJDU010042527.1:15774-17793[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.017 1.9 9.3 3.8 1 21 161 181 161 184 0.85

2 10 0.0019 0.21 12.3 2.8 1 23 190 213 190 213 0.98

3 10 4.9e-08 5.4e-06 26.8 1.8 1 23 219 241 219 241 0.98

4 10 4.8e-10 5.3e-08 33.1 0.8 1 23 247 269 247 269 0.98

5 10 0.00041 0.044 14.5 1.3 1 23 275 297 275 297 0.93

6 10 0.00026 0.028 15.1 4.0 1 23 303 325 303 325 0.99

7 10 8.6e-05 0.0094 16.6 0.3 2 23 470 491 469 491 0.93

8 10 1.8e-05 0.0019 18.7 0.7 3 23 499 519 497 519 0.97

9 10 2.5e-06 0.00027 21.4 3.4 1 23 525 547 525 547 0.98

10 10 7.4e-07 8.1e-05 23.1 0.1 2 23 553 574 552 574 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.017	1.9	9.3	3.8	1	21	161	181	161	184	0.85
2	10	0.0019	0.21	12.3	2.8	1	23	190	213	190	213	0.98
3	10	4.9e-08	5.4e-06	26.8	1.8	1	23	219	241	219	241	0.98
4	10	4.8e-10	5.3e-08	33.1	0.8	1	23	247	269	247	269	0.98
5	10	0.00041	0.044	14.5	1.3	1	23	275	297	275	297	0.93
6	10	0.00026	0.028	15.1	4.0	1	23	303	325	303	325	0.99
7	10	8.6e-05	0.0094	16.6	0.3	2	23	470	491	469	491	0.93
8	10	1.8e-05	0.0019	18.7	0.7	3	23	499	519	497	519	0.97
9	10	2.5e-06	0.00027	21.4	3.4	1	23	525	547	525	547	0.98
10	10	7.4e-07	8.1e-05	23.1	0.1	2	23	553	574	552	574	0.97

Sequence Information

Coding Sequence: ATGAATCTTAACGAAGACTGGCGCAATTTCGCAACAATTTGCAGATTGTGCATGCAGCGGGATGGTTTTATGCTGGGAATATTCAATCATAAGCATGGAAAAGAAAGAagtatttataagaaaattatggATTGCACCACGTTAGAgattTCATCAGAAGATGGATTACCAAACAGTATATGCCATCGTTGTTTATATAAAGTGGACTTTTGTCTGGAATTCCGACAACAATGCTATTTATCCGACGCCACTCTGCGCAATTTAAATGCCCTGCCAAAAGAAGTTCGAGCATCTATTCAACCAACCTTCCATGAAAACAATGTAGTAATGGTGGTAGACCCAAGTGTTGTGGATTATAATTCCGAATACGATTCTGATAACGCCGCTGCATCCAAAACTACCGTTCCAGCACCACCAGATCCTGCGGCTAGTGATCTCGAGCCTCAGGACGCCATTGATCAATTCGAGTACAAGAACGTGCACATGTGCAAATACTGTGATAGGGCTTTTTCAGATAAGACTGAATGCAACACGCATGAGACTGAAGACCACAACAAAGACGCTCCTTACAAATGTTCCGTATGCTATCAATGCTTCCCCGACAGGAACCAATACTCCGGCCATTTGAAAAGCGAACATCTCAATGACAAGCCTTACACGTGTCCCGAATGCGACCGTTGTTTTGCTCGCCGATCGGATTTGCGTAAGCATACTATCGTTCATACCGGTATTAAGCCCTTCACATGTCCAATATGCGGTAAAAGCTTTTCTCGGAACACCAACCTTTCGAAACATATCCGAATTCATAAAAGTCACAAACCTTTCGTTTGTCATAGCTGTCCACGGACGTTCATGTCCAAAATGGCATTGAATCGCCATGAGGTGCAACATACAGGCGTAAAACCATTTAAATGCAACTATTGCCAAATGGGTTTTATGAGGAAGGACAAGATGCTGCGTCATCGCAAACGCCATCTGCCGAAGGAAGGAACCCAAGAGGCTTTCCGAGAATTGCAGGCTTTAAGAGAGAATCTTATGAGTGAGTATGGTATGCCCAGTTTTAATAATGACACTGTAGCAGCGATGGGGACAGATGGAAATCCAGCTGGAGATTCTGGCATTGTCAGAGAAGATAGTTCTAAGGATACTTGGCCTAGTGCCAATCCAGAGAATTTAGTAGTTAATATTGATCCCTTTAATAATGGGCATGGGACGGAAGTGGAACCAGTATGTGTTACACCGGATATATTAAATAGTCCGGTGATGGAAGACTCTAGTCCTTATTCGAACGACAACAAGGCTTATGGTACAAGCGAGACCTTTGACTGTATAGATTCGAATGAATGTAATAGTAATGACGCTCATCAAGCTGATGAGTATGAAGAGCAACAAGATATAAAGAATGTTACATGTTTGATGTGTCCAATGAAGTTTTCTTCGGAGGATAATCTTCAACAACATATGGGATTTCATAGTGGGGAGAGACCTTTTGGATGTAATATATGCGGGAGGGCATTTTCTAAGAAACGGGAGTTGGATAGGCATTACACTATGCACACGGGGATTAAACTGTTCGAATGCAAGTTGTGTAAGAAGAGGTTTAGTCGGAAAGATAAATTGTTGCGACATTCCCGGATACATGAGGTCAGTAAGTTAGAGTGTGAGATTTGTGGGGCTACTTTTAACCGGAAGGATGGACTAGCGCAGCATATGAAGAGCCATATCAAGGATGAGGTGGATATCATAGGATGTTGA
Protein Sequence: MNLNEDWRNFATICRLCMQRDGFMLGIFNHKHGKERSIYKKIMDCTTLEISSEDGLPNSICHRCLYKVDFCLEFRQQCYLSDATLRNLNALPKEVRASIQPTFHENNVVMVVDPSVVDYNSEYDSDNAAASKTTVPAPPDPAASDLEPQDAIDQFEYKNVHMCKYCDRAFSDKTECNTHETEDHNKDAPYKCSVCYQCFPDRNQYSGHLKSEHLNDKPYTCPECDRCFARRSDLRKHTIVHTGIKPFTCPICGKSFSRNTNLSKHIRIHKSHKPFVCHSCPRTFMSKMALNRHEVQHTGVKPFKCNYCQMGFMRKDKMLRHRKRHLPKEGTQEAFRELQALRENLMSEYGMPSFNNDTVAAMGTDGNPAGDSGIVREDSSKDTWPSANPENLVVNIDPFNNGHGTEVEPVCVTPDILNSPVMEDSSPYSNDNKAYGTSETFDCIDSNECNSNDAHQADEYEEQQDIKNVTCLMCPMKFSSEDNLQQHMGFHSGERPFGCNICGRAFSKKRELDRHYTMHTGIKLFECKLCKKRFSRKDKLLRHSRIHEVSKLECEICGATFNRKDGLAQHMKSHIKDEVDIIGC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -