Basic Information

Insect: Lissagria laeviuscula
Gene Symbol: su(Hw)
Assembly: GCA_030264695.1
Location: JARJDU010031643.1:857-3660[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.8e-05 0.003 18.1 0.7 1 23 159 182 159 182 0.94

2 13 0.0065 0.71 10.7 0.4 2 23 215 237 214 237 0.89

3 13 0.00026 0.029 15.1 2.9 1 23 244 266 244 266 0.99

4 13 5.3e-05 0.0058 17.2 1.6 1 21 272 292 272 293 0.94

5 13 7.9e-07 8.6e-05 23.0 1.7 1 23 304 326 304 326 0.98

6 13 5.3e-07 5.7e-05 23.6 0.2 1 23 336 358 336 358 0.98

7 13 4e-06 0.00044 20.8 0.5 1 23 364 386 364 386 0.98

8 13 1.8e-05 0.002 18.7 1.6 1 23 392 414 392 414 0.99

9 13 2.7e-06 0.00029 21.3 2.4 1 23 420 442 420 442 0.95

10 13 2.4e-05 0.0026 18.3 2.7 1 23 448 471 448 471 0.95

11 13 6.1e-05 0.0066 17.1 0.4 2 23 478 499 477 499 0.93

12 13 6.4e-06 0.0007 20.1 0.6 1 23 505 527 505 527 0.99

13 13 5.2e-06 0.00057 20.4 2.4 2 23 534 556 533 556 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.8e-05	0.003	18.1	0.7	1	23	159	182	159	182	0.94
2	13	0.0065	0.71	10.7	0.4	2	23	215	237	214	237	0.89
3	13	0.00026	0.029	15.1	2.9	1	23	244	266	244	266	0.99
4	13	5.3e-05	0.0058	17.2	1.6	1	21	272	292	272	293	0.94
5	13	7.9e-07	8.6e-05	23.0	1.7	1	23	304	326	304	326	0.98
6	13	5.3e-07	5.7e-05	23.6	0.2	1	23	336	358	336	358	0.98
7	13	4e-06	0.00044	20.8	0.5	1	23	364	386	364	386	0.98
8	13	1.8e-05	0.002	18.7	1.6	1	23	392	414	392	414	0.99
9	13	2.7e-06	0.00029	21.3	2.4	1	23	420	442	420	442	0.95
10	13	2.4e-05	0.0026	18.3	2.7	1	23	448	471	448	471	0.95
11	13	6.1e-05	0.0066	17.1	0.4	2	23	478	499	477	499	0.93
12	13	6.4e-06	0.0007	20.1	0.6	1	23	505	527	505	527	0.99
13	13	5.2e-06	0.00057	20.4	2.4	2	23	534	556	533	556	0.94

Sequence Information

Coding Sequence: ATGGATGCACAAGAGGGTTTACACATTATTGGGAAATTAGAACCAATTGAATGTGAGACTGAAGAAGAGGGCGAAGTGATTGAGGAGATTCAAGTCGAATCAAACACTGATGGAAATCTTCAAATTGATGCATATCAGGAAGATGGGGAGATACCACAAGCtggtgAATATCTCACAGAAGATGGCACCCagaagataataataacagaagGTGGTCAGGCCTATCTAAGTCAGGATGGTGAATCAGCTGAGATTtatgtagaagaagaagaagagattgGAAATAACTACAAGACTGAATATGTGGTGGAGGAAGCAGATGCTGAAGGAGAAGTGGAGTTTGAGAATCCAGAGGAATTcactgaagaagaagaagatgatggcATGGTTGATAATTCAGAAGATACTCAGGATGTCTATGCAGAGGATCCTGATGATCCAGATTATCTCATTGAGGAGGAGAAGATTGATGAACATATTTGCTTAATATGCGAGCGTTCTTTCAAATCGGCTGCTAGCTTGAAACGACATGTATCAGTCACACATGACCCGGACGATGACGATGAGAACGATCCACTTGCATTCGAAGTCTGCGCTTGTTGTGGGGAACCAGCAGATTCTGCACATGCTAACGGTGCGATCAAATGCAAACTCTGCGATAAACTGTTCCAACTTCAAGTAAATTTGATTCGTCACAACTCCCTCGAACATCCTGACGATATTGGTCTCTATCGTTGCTGTGAATGCCTGCGATCGTTCAATACAAAAGGTGCGATTCGTCAGCACATGCAGTCTCATCCATTGGCGAAGCCTTATTCGTGTAAAGCCTGCAATCGTGACTTTACAAGGAAGTATCACTTAGAGCGGCATGTTATGCAGACGGGTTGTGATGGTACTCCCcgaaatcaattcaaatgtAGAGTATGCAATAAGCGCTTTGGACGGAAGGATAATCTACGGGATCATTTACGAGCGCACGCTGGACaaatcaaaaagaagaagacttTTCCATGTCCACACTGCGGCAAAGAATTCCAAGGGCAGGCATTGCTAGTGGTACATATGCGTACTCATACCGGCGAGAAACCCTATGCTTGTGACCTTTGCCCAAAGAGATTTCCTTCAAGTGGTGCATATAAGAAGCATAGGAGGATGCATACTGGAGAGAAGCCTTATCAATGCATGCAGtgcaAGAGAAGATTTGCAGCGAAAGAAACATTGAACCGGCATGTTCGTACACATACAGGAATAAAACCACATAGTTGTTCCTATTGCGGGAAATCGTTCATACAAGCTGCACAACTACGAGCGCATATTTTCCATCATACCGGTGAGAATGCCTTCACATGCCCGCATTGTAATCGGGCATTTAATCGCCGTGTGCGTCTTACGACGCATATTAAGTTCGTTCATGAAGGCGCAAATCCCCTAGAGTGTGAACAATGTGACAGAACTTTCTTCCGAAAAGAGGATCTCCTTCGTCATGGATTACTTCACACTGGAGAGAAACcaTACGAATGTGAATCCTGCAAAAAACGTTTTGCCGTAAAAGCTTCCCTGAAACTTCACATGCTTACACATAGGAAAGAACAGCCCTGCGCCTGTGACGAATGCGGACGTGCCTTTATTCGCCAAGATTGCCTCTTGCGCCACATGCGCGCTAAACATCGCGACGTCCTCGAGGACATACTAGCCGCTGCTGAGAAAAAACGACTGCACGAACAGCTCCTTGGAGCTGCATCGGAAACCACCATGAAACGCGAAATCTTGGAGTCTGATATCTGGACACAACTCACGCTTACTGATTCCATTAAAGAATTACTCTCGTTACTCGTCGATGAGAAAACACTCACAGCTTTCGGATGGCCTGATGCACCCGTGGATAAGATTCTAGACTCAGTTATTCGGCGCTGTGGTCATGAACCCGCTTCCGATGCTGAATTCGATTATATCTCACGCATGCGAGAGAATGCCAAGTTGCTTTTCACTGTTGTCATAGACGATCAAGCTGTTAAGTCATTGCTTAATAATCAAACTGTTGATGAAGTCATTCAGCATGTTTTACGATTAGCGAaaactgatgatgatgatgatgacgaagaGATGGAGGACGTTGAGGAAATTGAAACTGATGGCATTGAAGATGATGGAGAAATTGAACGAGGTGTGGATGTTGGTGCAGAACTTATTACAGGCGACGATGAAGAGATTATCACTAAGGTTGAAACTGTCGAATATGAAAGTGTTTCCTATTTTAGAGATGATATGATTGAAGAGACCAATGCAGCGGTGGAATCAATCGACTAA
Protein Sequence: MDAQEGLHIIGKLEPIECETEEEGEVIEEIQVESNTDGNLQIDAYQEDGEIPQAGEYLTEDGTQKIIITEGGQAYLSQDGESAEIYVEEEEEIGNNYKTEYVVEEADAEGEVEFENPEEFTEEEEDDGMVDNSEDTQDVYAEDPDDPDYLIEEEKIDEHICLICERSFKSAASLKRHVSVTHDPDDDDENDPLAFEVCACCGEPADSAHANGAIKCKLCDKLFQLQVNLIRHNSLEHPDDIGLYRCCECLRSFNTKGAIRQHMQSHPLAKPYSCKACNRDFTRKYHLERHVMQTGCDGTPRNQFKCRVCNKRFGRKDNLRDHLRAHAGQIKKKKTFPCPHCGKEFQGQALLVVHMRTHTGEKPYACDLCPKRFPSSGAYKKHRRMHTGEKPYQCMQCKRRFAAKETLNRHVRTHTGIKPHSCSYCGKSFIQAAQLRAHIFHHTGENAFTCPHCNRAFNRRVRLTTHIKFVHEGANPLECEQCDRTFFRKEDLLRHGLLHTGEKPYECESCKKRFAVKASLKLHMLTHRKEQPCACDECGRAFIRQDCLLRHMRAKHRDVLEDILAAAEKKRLHEQLLGAASETTMKREILESDIWTQLTLTDSIKELLSLLVDEKTLTAFGWPDAPVDKILDSVIRRCGHEPASDAEFDYISRMRENAKLLFTVVIDDQAVKSLLNNQTVDEVIQHVLRLAKTDDDDDDEEMEDVEEIETDGIEDDGEIERGVDVGAELITGDDEEIITKVETVEYESVSYFRDDMIEETNAAVESID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -