Llae017939.1
Basic Information
- Insect
- Lissagria laeviuscula
- Gene Symbol
- -
- Assembly
- GCA_030264695.1
- Location
- JARJDU010042287.1:7958-11354[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0023 0.26 12.1 1.7 1 23 159 182 159 182 0.97 2 17 6.4e-05 0.007 17.0 1.4 2 23 189 210 188 210 0.96 3 17 0.009 0.98 10.2 0.2 1 21 216 236 216 237 0.93 4 17 1.5e-05 0.0016 19.0 0.2 2 23 245 266 244 266 0.97 5 17 0.002 0.22 12.3 2.7 1 20 364 383 364 385 0.93 6 17 0.0019 0.21 12.4 0.8 3 23 394 414 392 414 0.95 7 17 0.00012 0.013 16.2 0.1 1 23 536 559 536 559 0.93 8 17 1.1e-05 0.0012 19.3 2.0 2 23 566 587 565 587 0.96 9 17 9.4e-05 0.01 16.5 0.5 1 23 594 616 594 616 0.97 10 17 0.013 1.5 9.7 0.5 2 21 624 643 623 647 0.91 11 17 1e-05 0.0011 19.5 1.8 1 23 662 684 662 684 0.98 12 17 3.9e-07 4.2e-05 24.0 1.9 1 23 690 712 690 712 0.98 13 17 3.6e-07 4e-05 24.1 0.4 1 23 718 740 718 740 0.96 14 17 2.9e-05 0.0032 18.1 1.0 1 23 746 768 746 768 0.98 15 17 4.7e-07 5.2e-05 23.7 0.8 3 23 776 796 774 796 0.96 16 17 1.9e-05 0.002 18.7 2.1 1 23 802 824 802 824 0.99 17 17 0.17 19 6.2 1.6 1 23 829 852 829 852 0.96
Sequence Information
- Coding Sequence
- ATGGAGCtgcgaaatttaaatttcgctCAGATATGCCGATGTTGCAGAGAGACCGGCCCCACGATGGTTTCAATCTTCGCCGAAAGTAAGCCAAACACCAAATATCCCCGCATGGACGAGATGCTCATGGCTATAACATCTCTTAAGGTTTCAGAGCACGACGGTTTACCTACTGTTTTATGTACCAGTTGTACTGATAAAGTTCAAAATGCTTACCAATTACGTCAGCAACTTATTCAGAGTGAATCAGAGTTTCGAAATTGTATTAAACATGAAAAGAACGATGTGGAAAATAATCCACATAATGAATTGATGGGAAATATATTAAGAGATATCCTAGGTGATCAAAGAGATGATCAGGATGATTATATTGATACCAATGATGGATATGAGGACATTTCAGACAATGATGTGAAGCcaacaattaatgtaaataccaAAAAGAGGAAACAATCAAAGGGGACAAGGGGAAGTTTTGAGTGTGTGTCTTGTGCTAAGGAGTATACAACAAGGAAGTCATGGAAGAGGCATATGTCACGATATCATGGGAATAATAAGAAGTGGAAATGTACAATATGTGAGAAGGTATTTGGTAGGATTGAACATTTTAAGAGACATCTGTATGTTCATCTTAAGGAAAAGccttttatttgcaataaatgccGGCGAGGATTTAACCGAATGGAGATGTATAATGCTCatgttaatatttgcaaaggcAGAAGAGTTTTGTCTTGTGAAGTTTGCAATAAAGGCTTTGTACAGGAATCCACACTTGAGGTGCATAGAAAAATGCATGATAGCAATGATTTGAAGCATTGTATCTTAACTTTGAAAGATTTAGAAAGTTTTGAGAAGTTTTACATGGAAGTTGATGGTGAGGAGGACAATGATAAGGATGATTTTAGTGAGAAAGATGATAATGAGGATGATACTGGTGATGATGATTCTCATAATGCAATTCATATATCTTATGAACATGGGAATAAAGAAGCttatattagaaaacttaaatgtaatttatgtggAAGTATTGAGGATACGATAAATAGTAGGGAGCATTTGAGTATTCATTTGAGACCAAAGCCCTATTGCTGTAGGAAATGCAAAAGAAgttttgaaagaaatgaatatttaacttCTCATGAATCTATTTGCGATGGCAAATTGTATTTAGCTTGCGATATGTGCGATGAAGTATTCCAAGATGCGAAACTTCTAGAAAAACATTGCAAAACGCATGTTGTTGCACCAAGCACAcgaatcaataatttaattattaccgATCTTGAACATTCCACTAGTTTCTATACCGAAATTTATGTCAATGCTGAAGAATCATTACCAGTTGATAATCTTCAAATAGAAATCGAAGAGGATTCGGATTATGAACAACCAGAAGATgcatatattgatttatcCGATACTGAATACAAACCTTATCATGTCAAGCatgtaaagaaaaagaaaaaatcggTGACACCAGTGACACCTGAGAAACGGAAACGTGGCCGTCCTAAGAAATCAACTCAAGCGGCAGCTTCCAGTccatcattatttaattctgaTGTAAATCAATCACAAAATGCCAATAGCAATAAAGAATTTGTATGTCCGATATGTTCATTATCATTCAAACGTATAAGTCTTCTAGAATCGCATGGCAATGAAGTTCATGAGAACGAAAGAATCTTGCATTGTACACAATGCGATCAACGATTTTCAAGAGTGTATGCACTTAATCGACATATGCAAATCCATAAACTTGGTGCGATGCCATATGATTGCACATTATGTGACGAGAAGTTTGATAACAGAGAAGACTTGATTAATCACTCGAAATCGCATAATCAAAACGATGAGGATACTACATGCTATGATTGTTGCAAAGTGTTTCCTACTTTGGAGGAACTACAAGAGCATATGGACGAAGAAGAGCATTTCGCACGGAACGTGGAGGAGgcgaagagaaagaagaagcgATTCGAATGTGAAAAATGTACGAAGAGGTTCACTACGCAGAAGGTTTTAGAGATACATATGAGTAAGCATCCTGAAGATAGGAACTATGTGTGTCCGAAATGCTCTAAGTCATTCCAATCGAAATCGAATTTGACTGAACACCTGCGGTTCCATGATAAAATCAAGAAGTTCTTATGCTCCGAATGCGGGCAAAGTTTTATACGGaatgattatttgattattcacATGCGAAGACATCGTGGGGAGAAGCCTTTTAAGTGTAAATTCTGTGACAAAGGTTTTCCAAGGATTACAGATCTTACTGTCCATGAAAGATATCATACTGGAGAGAAAACACATTTGTGTGTTGTTTGTGGTCGTGGATTCAAtagagCGTATAATTTAACAGTGCATATGCGTACACACACAGGTGAAAAGCcatataaatgtacatattgtGAATCGGCATTTGCACAATGCAATGATCTTAAAGCTCATATCAGGAGACATACAGGAGAGAGGTTTCACTGTGATATGTGCTCGGAAACTTTCCTCATGGGCTATGCTCTAACACAACATAAACGTACCGTTCatgGTATCAAAATTGTCAGTAGGATCGGCCGATTGGAACCGGTAGATGTACCGAATACGGACGCACCGGATCTTGTTAGAATGGAATTGCAAGAAGGTGCTGTTCCTGAGACTTCTGACAAAGCTGAGTTTAATCCAATGTCAGTTGTTGCTGTTGAGCAGCGATTTAGTTAA
- Protein Sequence
- MELRNLNFAQICRCCRETGPTMVSIFAESKPNTKYPRMDEMLMAITSLKVSEHDGLPTVLCTSCTDKVQNAYQLRQQLIQSESEFRNCIKHEKNDVENNPHNELMGNILRDILGDQRDDQDDYIDTNDGYEDISDNDVKPTINVNTKKRKQSKGTRGSFECVSCAKEYTTRKSWKRHMSRYHGNNKKWKCTICEKVFGRIEHFKRHLYVHLKEKPFICNKCRRGFNRMEMYNAHVNICKGRRVLSCEVCNKGFVQESTLEVHRKMHDSNDLKHCILTLKDLESFEKFYMEVDGEEDNDKDDFSEKDDNEDDTGDDDSHNAIHISYEHGNKEAYIRKLKCNLCGSIEDTINSREHLSIHLRPKPYCCRKCKRSFERNEYLTSHESICDGKLYLACDMCDEVFQDAKLLEKHCKTHVVAPSTRINNLIITDLEHSTSFYTEIYVNAEESLPVDNLQIEIEEDSDYEQPEDAYIDLSDTEYKPYHVKHVKKKKKSVTPVTPEKRKRGRPKKSTQAAASSPSLFNSDVNQSQNANSNKEFVCPICSLSFKRISLLESHGNEVHENERILHCTQCDQRFSRVYALNRHMQIHKLGAMPYDCTLCDEKFDNREDLINHSKSHNQNDEDTTCYDCCKVFPTLEELQEHMDEEEHFARNVEEAKRKKKRFECEKCTKRFTTQKVLEIHMSKHPEDRNYVCPKCSKSFQSKSNLTEHLRFHDKIKKFLCSECGQSFIRNDYLIIHMRRHRGEKPFKCKFCDKGFPRITDLTVHERYHTGEKTHLCVVCGRGFNRAYNLTVHMRTHTGEKPYKCTYCESAFAQCNDLKAHIRRHTGERFHCDMCSETFLMGYALTQHKRTVHGIKIVSRIGRLEPVDVPNTDAPDLVRMELQEGAVPETSDKAEFNPMSVVAVEQRFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -