Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: ush_1
Assembly: GCA_963971575.1
Location: OZ020623.1:7722090-7730200[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0026 0.63 12.5 0.1 1 20 151 170 151 172 0.94

2 9 0.0002 0.047 16.0 2.2 1 23 213 235 213 235 0.98

3 9 0.0073 1.8 11.1 1.2 2 21 262 281 262 282 0.92

4 9 0.041 10 8.7 4.4 2 21 527 546 526 547 0.94

5 9 0.0026 0.64 12.5 0.0 3 21 585 603 583 604 0.91

6 9 4.3 1e+03 2.4 0.2 2 23 643 664 642 664 0.86

7 9 0.0034 0.81 12.1 1.4 1 23 670 692 670 692 0.99

8 9 0.39 93 5.7 3.1 1 23 746 769 746 769 0.94

9 9 0.037 9 8.9 0.9 2 21 833 852 832 853 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0026	0.63	12.5	0.1	1	20	151	170	151	172	0.94
2	9	0.0002	0.047	16.0	2.2	1	23	213	235	213	235	0.98
3	9	0.0073	1.8	11.1	1.2	2	21	262	281	262	282	0.92
4	9	0.041	10	8.7	4.4	2	21	527	546	526	547	0.94
5	9	0.0026	0.64	12.5	0.0	3	21	585	603	583	604	0.91
6	9	4.3	1e+03	2.4	0.2	2	23	643	664	642	664	0.86
7	9	0.0034	0.81	12.1	1.4	1	23	670	692	670	692	0.99
8	9	0.39	93	5.7	3.1	1	23	746	769	746	769	0.94
9	9	0.037	9	8.9	0.9	2	21	833	852	832	853	0.93

Sequence Information

Coding Sequence: ATGCAGAAATTTCGTATGCTCGTCCCAGAACTACTGAGCTGTAGAGgaGAGGATGAGGATTGGGATAGCGATGAGGCGAAAAACCCTCCATCGGAGGAACCCAAACAATCATCCCCTTCTCCTACTCCAGAACCCGAAACTCCATCAAAAACTCCCGAACCAACTCAACCAACTTCCGACGAAGCACCAAGGCTTCGTCTAAATGCATCATTAGCTACAGATCCGGCGCTGCGACCTACAGAAGTACTCAGGACTGAAATAAAACCAGAGTCCTTAAGGTCACCAGCTGATACACCAACTCCTGAGTATTTAGCAGGACTAGGACAAGGGGGATTAAGTCCTGCTGCACTTTTAGCAGCGGGAAGATATTTTCCAATCTTACCAATACCAACAGATGTTCTTCCGAGACCACCATCTGAAGGGGATCGACCTGTAGGATCAGTTCCTGTTTATATGTGTACACCATGTGGAATTAGatTTAGTTCGCTTAGTACCTTGGAAGCCCATCAGACGTACTATTGTTCACATCGCCATCCAAAAGCTTCCAGTGATGTTGAAGATGGAAAATCAGTAGCTGGAGAAAGCAATCAAGGTGACGAAGAAAATCCATCAAAGGCACCAAGGACTGGGAAACAATACGCTTGTACTCATTGTTCATATAGTGCTGACAAAAAAGTAAGCTTAAATCGTCACATGAGGATGCATAGCGTATCACCAGGACCTTCCCAAGGACCTCCAACACCCACAACAAATGGAGAAAACTCCAACGATGTCCAGGATAGATATTGCCAAGACTGCGATATAAGGTTTAGCAGTTTAAAAACCTTTCGAGCACATAAAATGCATTATTGCTCTACAAGACATATAGTAAAACCAAGTGTTCCACCTAGTAGTACTTCAGGAAGTGGCCCTACATCACCAGCTGAAACCTGTAAGACACCTCCAAGTCCAACGAGTCAACAAGCCCTATTAGCTTTACCAACAAATCCAATTCTTATTGTCCCTTATTCATTGTTTAGAGGTGCTAGTTTACTAGGGCCTAGTATGGTAGGTCTTCCGAACCCAGATACACCTTGTTTTTTACTCCCAAATGGTACACTACAACCTATGTCCCATGCCATAACTAATACTTCAACAGCAGCAGTCCAAACTAATGAAAAGGATACAATAAAAGATCCATCTGCTCCTTTAGATCTAAGTATGAGAAAAAGTCCAGAATTAAACGACTTAGTAATCGATGAAGATGAACCTGAAAAGGAACCAGAAAAACATACATCTGAAAGTCCAGAGCAAATTGTATGTGCTCCTTCATTACCTAATTCACCAAGTATCACTCCTTCACCACCACCTACTTCAAGTATATCACCCAAAGCGAAGAGGGAACTAAGAAGTACTTCACCGAGAAATAAAACGAAGCCAGAAGAAAATGATAAAGTTTTAGGGGTGAATGTACCAGTTCCTCCACAGTTACACCCTATTTTAATGAGAGCAGGTCCTATTATCAATCCGGAAATTGCGTTAAGGTTGGCCCAAGATCTTCAAAATAGTCCACAGGTACTAGTCAAGCAAGGAGTATCCAAATGTAAAGAATGCAATATTGTTTTTTGTAAACACGAGAACTATATTGCTCATAAAAAGCATTATTGTTCTGCACGTCTCCAAGATGACGATGGAACCTCCAAGAGTCCTCCAACAAGTCCTTCCAGTAATGGAAAAACATCTCCCGGCAATCCTCAATACCAGCAATTAATCTGCATGGCTTGTGGAATTAAATTTACTAGTCTGGATAATCTAAATGCACATCAGATGTATTACTGCTTGAAGAGGAATGAATTACAGAAAATTCCAGAGGTTATTCGTTGTTTAAAATGTAAGAACGTGGTTGAGCCAGGGCATGTGTGTTCCCCTGCCCAAAGATCAGGTTGGAAGTGCCCTTGCTGTGACGTTGTCAGTTTGACCGCTAGTGGCGCGCAAAGGCATATGGAAACTCATTCTGGAGTCAAGGCATATAGATGTACGATCTGCAAATATAAGGGAAATACTTTGAGGGGTATGAGAACGCATATTAGAATGCATTTTGAGAAGAGGACCGCTGATTTACAGgaGGAAAAATACATAACATACATCCTAGAAGATGAATCTTTAGAAACAAGTCCTTCAACCGCAGCAACCCCAGTTCCAGAAGGAAGTCTATCCTCCCCCAGCTCTGAAGAAGGTGGCCGTAGTGAACGTCTTCATCACTGTGACTCCTGTAGCTATTCCTCAACCTATAAAGGCAATGTTCTTCGTCATGTCAAACTAGTACACCCTACCAAAAGTGAAAACGGtgaagaagaaataaaagagGAAAGAAGATCTGAAGAAAAACCAAAATCAATGCCTGttttagaagaagaagaagttaaaataaaacaggAAAATGAAGAAATTGTTGAAGTTGATGATAAAGAAAGTCCTGAAGATATTCTTCAGGAAGCTAATAGGCCAGGACCTAAATATTGCAAGTCTTGTGACAtatcttttaattattattctacttttatagcacataagaaattttattgttCCAGTCATGCAGGTGAATTAACTGgcaataattcaaataataataataaccataCTCCAAGTAGGCCTCAGGCTGAAACTtcagttttgtaa
Protein Sequence: MQKFRMLVPELLSCRGEDEDWDSDEAKNPPSEEPKQSSPSPTPEPETPSKTPEPTQPTSDEAPRLRLNASLATDPALRPTEVLRTEIKPESLRSPADTPTPEYLAGLGQGGLSPAALLAAGRYFPILPIPTDVLPRPPSEGDRPVGSVPVYMCTPCGIRFSSLSTLEAHQTYYCSHRHPKASSDVEDGKSVAGESNQGDEENPSKAPRTGKQYACTHCSYSADKKVSLNRHMRMHSVSPGPSQGPPTPTTNGENSNDVQDRYCQDCDIRFSSLKTFRAHKMHYCSTRHIVKPSVPPSSTSGSGPTSPAETCKTPPSPTSQQALLALPTNPILIVPYSLFRGASLLGPSMVGLPNPDTPCFLLPNGTLQPMSHAITNTSTAAVQTNEKDTIKDPSAPLDLSMRKSPELNDLVIDEDEPEKEPEKHTSESPEQIVCAPSLPNSPSITPSPPPTSSISPKAKRELRSTSPRNKTKPEENDKVLGVNVPVPPQLHPILMRAGPIINPEIALRLAQDLQNSPQVLVKQGVSKCKECNIVFCKHENYIAHKKHYCSARLQDDDGTSKSPPTSPSSNGKTSPGNPQYQQLICMACGIKFTSLDNLNAHQMYYCLKRNELQKIPEVIRCLKCKNVVEPGHVCSPAQRSGWKCPCCDVVSLTASGAQRHMETHSGVKAYRCTICKYKGNTLRGMRTHIRMHFEKRTADLQEEKYITYILEDESLETSPSTAATPVPEGSLSSPSSEEGGRSERLHHCDSCSYSSTYKGNVLRHVKLVHPTKSENGEEEIKEERRSEEKPKSMPVLEEEEVKIKQENEEIVEVDDKESPEDILQEANRPGPKYCKSCDISFNYYSTFIAHKKFYCSSHAGELTGNNSNNNNNHTPSRPQAETSVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -