Lhae017796.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020612.1:40177910-40186038[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0097 2.3 10.7 3.5 2 23 174 196 173 196 0.96 2 19 0.36 86 5.8 3.4 1 20 290 309 290 311 0.92 3 19 2.3 5.6e+02 3.2 1.0 2 20 369 387 368 389 0.93 4 19 0.32 77 5.9 6.4 1 23 444 467 444 467 0.96 5 19 0.25 60 6.3 0.8 3 23 475 500 473 500 0.93 6 19 0.021 5 9.7 0.2 1 23 514 536 514 536 0.98 7 19 0.00024 0.058 15.8 1.0 1 23 540 562 540 562 0.97 8 19 0.00055 0.13 14.6 2.2 2 23 590 611 589 611 0.94 9 19 0.2 47 6.6 1.1 3 23 669 690 668 690 0.94 10 19 0.00088 0.21 14.0 0.2 2 23 731 752 730 752 0.97 11 19 0.07 17 8.0 0.3 2 23 794 815 793 815 0.97 12 19 4.4 1.1e+03 2.3 0.5 1 23 829 852 829 852 0.89 13 19 0.49 1.2e+02 5.3 0.2 2 21 863 882 862 883 0.95 14 19 0.015 3.7 10.1 4.9 1 23 897 919 897 919 0.97 15 19 1.1e-05 0.0027 20.0 0.6 1 23 949 971 949 971 0.98 16 19 0.00055 0.13 14.6 0.4 1 23 1003 1025 1003 1025 0.93 17 19 0.0028 0.66 12.4 5.3 1 23 1040 1062 1040 1062 0.96 18 19 9.1e-06 0.0022 20.2 3.4 1 23 1066 1089 1066 1089 0.97 19 19 0.0014 0.33 13.4 1.4 1 23 1130 1152 1130 1152 0.98
Sequence Information
- Coding Sequence
- ATGGacatcgaaaatatatattcaatttGTCGGTTATGTTTGTCTGATTCTCCTGTCTTATCTATTTTAGATTGTGACTATTCAACATTGCAACAGAAAATATTAACTCTCGTTAATGTTGAGGTGCGAGACACGGATAAAGTTACAAAAATGATTTGTAACCAATGCTATATGAAGATTGaagaattatttgattttaagaAAAACTGCGAACAGTCACAATTTAAATTACAATGTTGGGTAACTAACAATACACCACCCAGTGATTCACCACCACCACTCACTTCGgCAATTAAACTTGAACCAATGGATGAAGAGGAAGCTATGGATATTGCCGAAAATGAGAACGAGTTTCAAATTAAAACTGAACCTGAAGATTGCTATACAAGTCTGGATTCTGAATACCTGGAAGCACCTCAACTTAGTCCACAATACCCATACATTCAGGAAGATGAGTCTCTGCTAGTCCCACTCGGAGAATGTTCAGTCGCAACACATGGTATAGAATTTCCTCGAGACACTTGTCGAATTTGTCATAAAAAATTTTTCAGTAGTAATAATCGTATCAGGCACGAACAAACCGTTCATAATTATAACGAAAATGATGAAACTATTGATATATTTGAATCAATGCCTGTTTTACAAGAaccaataaatgaatttaagacTCAAgttattgctgtaaaaagaattgaAGTTAAAGATAAAGAATCTCATTCATTTATTCATACAGAAgttgattttattaattattttacttcGATGAGAAAAATGTTGGATAACTTTAAATGTAGttgttgtaataataattacgggacaaagaaaaaattattaagtcaTCTTAGAAAAACAATGAACGTAGAAAGTTACTGTTGCTATTATTGTTGGattatttttccgaatttttCTCAGTTTATGCATCATAGTAATcgttttaaacaaaagaaggcTTGCTATGCAAGAGAAAAGATGATATTGTCGGGTAGTTTAGAAAATAAAGTATACCAAAATTATATATGCACGCTATGTCAATTTCTATTAATCGACGAAACAGGTATACGTGAGCATATGGAAAGCAAACACACAACCAGCGTATTGCCAATCACATGTACAACTTGTGACTGTATTTTAGAAACGGAGGAAGATTTTAAAGAGCATTTACATAATTCATGTTTCTTTAGAATATACTGTGGTATTTGCAGGAACCATTTTCCAAATTTGACAGATTTTGACAATCACTGTACAATACATAGTGATAACTTTGAAGGTATTAATGATGATACGATGTTAATTAACCCGGCAAAACTTATATCACCACCGAAATTACTACACAATTGCCATCTATGCAAAAATAAGTACAACAATAATTTAAGTCTCTTTAAACATTTGAAAGTGTATCATAATGATCCAAATATTTCCATCTGTAAACTATGTCCTGATAATgttctgaaaaaattcatggTAAATAATGATTTGACTGAACATATGCAGACGTGCCATAACAATTCTTTAGCTGCACAAGTCACCCAAGAAAATAATTTCTCCTGTAATATTTGTAATGCTCTTTTCGGAACTTTAAATGAATGGAAATCTCATCAATCGGTACATGTGAAAAAATTTGCTTGCTCAGATTGTAGCGCTGTATTTGAAACATCCCATGAATTAGAGTCTCACAAACGAAACCATTCAGATCTTAAACTCAAACTTTATCGTTGTTCAGAAAATTCTTACGTAACAAGTCAACAAGCATCAAATACTGACATATTAATGTGTAGAATATGTGACAAATTCTTCAATTCGAAGAAACAATTACATGATCATTTAGCTCTTCATGAAACTATGCCAAGATTAGAATTCCAAGAATCAGAGTCGGAGGTTGAGACTAAAACTaAACATAACCGTAATGTTCATGGAGAAGAAAAATCTGATTCACGAGTAAGATCTAAATCTCAACCACCAGAAAATCGTATATTTACACCGGGAAATGATGGTTTAGAGAGGCATTGCACTATTTGTAATCTTGTTGTCACAAGTTCTGCTGCATTTGACcgtcataataataaataccattCTAACTTAACCaagagtaaaattaaaatgaaaaaagaaagGAACAGTATGCCTAATTTAGTCCCTGAAACAGAAGATTATAAAGATGTTAAAAAACTTACTTTTATCCCAAAGACGGTTGAATGCAAAATATGTGGAAACTTCTTTGCCAGTGAAATAAGTTTAAGAAATCACTCACGTGTCCACAATAAAGAACCGAGGGcacttaaaaaagttaaaattgaaaaagaagaTCCTGATGTCCAACGATCTAGTAGAGGGAGGTTGATAAAAAAGAATCCAGCTGCATTCCATGCAAATGGAAGTATTCGTTGTCCAATTTGTAGTAAATTACATTCAGATGTTGAGTCGTTGCAAGAACATATATTAACTCACGTAACCGACGATATGGTACCTCCACATGCTAAAAAACTCTATCCCTGCATACATTGTGGTAAAATATGTCTAGCAGCACCATCTCTAGTTAACCATATTAGGTATATGCATGATCAAGCAGCTATAAAAAGAGACCgtaaaaaatgtcgtaattgTAAGAGTATTCTTACAAACAATGCTGCTTTGGCTAATCATCTAAGAGTTTGCACCAAAGAGTCTCctacaaagaaaaaaattgtgaaacatACATGTACAATATGTCATAAAATATTTGGTAGTTTCCATGCTCTTCAAGGACATGTAAAAAATCATGTATTAAAACCTACAAAAGACGTACCTcttccaaataataataataaaaatgttaagaaaaaagaaaaaaagactATTAAACAAGAATTCTCTTGTACAAAATGTAATTTACAATTCTCCGATCCAGAATTATTGCAAAAGCATTTACAAATTCATATTAGTCCTAAAAAGAAATCAAATAATGTTTTACAAAATGGCGCTAATCCAACTAACATTCGTACTCCTAAAGATGCAACAAATGAAAATAGTTTTCAGTGTACTATATGTAATACAAGTTATAGTAATGCTGCATCTTTTATTTCACATAAAGGTTGGCATAAAAGACAGCATGTTCGACAAAGTCTACCATCAAAACTAACACACAATTGTAGTCATTGTAATAAATCTTTTGCTGATCAGCTTACTTATCAACAGCATCAGGTAAAACATGGACTTCGTTATAGTTGTAATCATTGCGATAAAACTTTTACTTATCCTGGATCTATGAAAAAACATTTAGAAAAAACACATGAAGATTCTAGGGATGTATCTAAAGAAGTTCCACATGAAGTAGTTGAAAATGGATTACCAGCAGTACAAGAACCTCCGAAACctaaaaaaacagaaaagaaaaataagagTCCTCCTAATTATAAATGTACGGAATGTAATTTACTTTTCCCTAATTCTAAAAAGTTACGATTACATGTTACGAAACATGCAAATACTACAgtgtaa
- Protein Sequence
- MDIENIYSICRLCLSDSPVLSILDCDYSTLQQKILTLVNVEVRDTDKVTKMICNQCYMKIEELFDFKKNCEQSQFKLQCWVTNNTPPSDSPPPLTSAIKLEPMDEEEAMDIAENENEFQIKTEPEDCYTSLDSEYLEAPQLSPQYPYIQEDESLLVPLGECSVATHGIEFPRDTCRICHKKFFSSNNRIRHEQTVHNYNENDETIDIFESMPVLQEPINEFKTQVIAVKRIEVKDKESHSFIHTEVDFINYFTSMRKMLDNFKCSCCNNNYGTKKKLLSHLRKTMNVESYCCYYCWIIFPNFSQFMHHSNRFKQKKACYAREKMILSGSLENKVYQNYICTLCQFLLIDETGIREHMESKHTTSVLPITCTTCDCILETEEDFKEHLHNSCFFRIYCGICRNHFPNLTDFDNHCTIHSDNFEGINDDTMLINPAKLISPPKLLHNCHLCKNKYNNNLSLFKHLKVYHNDPNISICKLCPDNVLKKFMVNNDLTEHMQTCHNNSLAAQVTQENNFSCNICNALFGTLNEWKSHQSVHVKKFACSDCSAVFETSHELESHKRNHSDLKLKLYRCSENSYVTSQQASNTDILMCRICDKFFNSKKQLHDHLALHETMPRLEFQESESEVETKTKHNRNVHGEEKSDSRVRSKSQPPENRIFTPGNDGLERHCTICNLVVTSSAAFDRHNNKYHSNLTKSKIKMKKERNSMPNLVPETEDYKDVKKLTFIPKTVECKICGNFFASEISLRNHSRVHNKEPRALKKVKIEKEDPDVQRSSRGRLIKKNPAAFHANGSIRCPICSKLHSDVESLQEHILTHVTDDMVPPHAKKLYPCIHCGKICLAAPSLVNHIRYMHDQAAIKRDRKKCRNCKSILTNNAALANHLRVCTKESPTKKKIVKHTCTICHKIFGSFHALQGHVKNHVLKPTKDVPLPNNNNKNVKKKEKKTIKQEFSCTKCNLQFSDPELLQKHLQIHISPKKKSNNVLQNGANPTNIRTPKDATNENSFQCTICNTSYSNAASFISHKGWHKRQHVRQSLPSKLTHNCSHCNKSFADQLTYQQHQVKHGLRYSCNHCDKTFTYPGSMKKHLEKTHEDSRDVSKEVPHEVVENGLPAVQEPPKPKKTEKKNKSPPNYKCTECNLLFPNSKKLRLHVTKHANTTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -