Lhae040332.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020617.1:51823533-51827022[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0097 2.3 10.7 1.9 1 23 51 73 51 73 0.98 2 14 0.084 20 7.8 1.7 2 19 79 96 78 99 0.83 3 14 0.00048 0.12 14.8 2.9 1 23 111 133 111 133 0.97 4 14 0.022 5.2 9.6 0.3 3 23 138 159 137 159 0.97 5 14 0.014 3.3 10.2 7.5 1 23 169 191 169 191 0.98 6 14 0.00084 0.2 14.0 3.5 1 23 224 246 224 246 0.99 7 14 0.78 1.9e+02 4.7 2.1 1 23 249 272 249 272 0.96 8 14 0.00076 0.18 14.2 1.3 2 23 282 303 281 303 0.97 9 14 0.0066 1.6 11.2 2.5 3 19 311 327 309 329 0.96 10 14 4e-05 0.0097 18.2 0.3 2 23 344 366 343 366 0.96 11 14 0.0011 0.26 13.7 4.4 1 23 373 395 373 395 0.98 12 14 2.7e-05 0.0065 18.7 1.1 2 23 403 425 402 425 0.94 13 14 7.9e-06 0.0019 20.4 4.0 1 20 431 450 431 453 0.95 14 14 0.00013 0.031 16.6 4.1 1 23 459 482 459 482 0.94
Sequence Information
- Coding Sequence
- ATGTACAGGAATATCCCAGTATCTGACGTACAGTTTCCAAATGATTTCCAAAActatttacatcaaaatgaAATCAAAACCGATGCCAGGTCAAAACGGAAACGGACTGTCAAGTTAAAAAATCattcagaaaatttaaaacgagGAGTTTTTCGCTGTAAATCGTGTGGAACTGTTtggaaaacaaaacaattattcCTAAAACATTTATCAACACATATGGGTACTCCGATCTCCTGTACAAAATGCAAAAAGAGTTTTAATAGTAGGATGGCATATACGTGTCATATAAGTCTTAAATTATGTGAAACGCAGACCAAATTAATAAGATATCAATGTGATCAGTGTCCTAGATTTTTTCGTTTTAAACGTCACATTGAAAGACATTTGGAAGGGCATAAACGTAACAATTGTACGTATTGTGAAGTTAAATTAACTAATCGAATTAAATTGATTGAACATTTACAAACTGTTCATTCGATTAAACTTGAAAGAGCTGTTTTACATAAGTGTGATCATTGTGAGAAACGATATGTAAAGAAACGATCGTTGTATTATCATTTGAAACAGCATGCAGATAATAAAATTGTGTGTCTTGAGTGTGGTTGGATGAGTCTGACGCAAGAGGAACATAACGTTCATTATGCTGGACATGATAAGGATTTTCCGTTTAAATGCGAGAGGTGTAATGATAGGTTTTCAAGAAGACAACAATTTTTAGTTCACATGAAGagACACGATCGTTATAAATGTTATACTTGTAACGAATCCCATGCATCTCGAGCCCAAATTTTACGACATAAACAACGAGGACATTCTGTTCAACGATTAGAACCTCAACTAAAATGTCCGCACTGTCCCAATGCTTTCCAACGGAGACTAGCTCTTCAGATGCATCTAAAAAAGCACACAGAAGACAAACCTATGCATTGTAAATACTGTGATATTTCTTTCCGTTCCCCTTATCTTTATTTCAAACATTGCGCTTCGACAACTCATGAAATAAACTCACCGGAGAAACAACAGTTAGTTTGTGAGATTTGCGGGAAGTTATTTATGAAGAAATATCAACTTGAACAGCATTTACAGAGAGTTCATAATCAGAATAAGCAAATTTTTAGTTGTGATTATTGTAAACATACAACGAATAATAGGAAAAATATGTTGAGACATATGTCGATACATCTTGAAGATAAAAAGGAATGCGTCTGTGAACAATGTGGCAAAGCGTTTTACAACTTGACAACACTGAAGGATCATATGTTGTACGTTCACTCACaggAACGTCATTTTAAGTGCACCCAATGTGACAAAGCATTTAAAAGGAATTCCGAACTAGTCCGCCATCAATCTTGTCACTCTGAAGTCCGTCCGCATGTCTGTAAGACCTGCGGTGTGTCCTACAAAAGAAGTACTCATCTAAGACGTCATGAAGAATCCCAACACGGTACTGTAACAAACACACGAAGAGTTCAACGACTAAAAAAAGATGAAAACGGAACTCTAGTCCCAATACAAGAAGAGAAAAAACCGAGACAAAAAAGCAAAAAGAAACAGAAAACAGATCCGAAGCAAGTATTTTCGATAATGGATACACAGAGTGGAGAAATGATGACTTTTACAATTccacaaatagaaaataatttaactaCAGTCTTAAGTATCAATCAGCCTTATGGACAAGAATTAATACAAACTGTAACATTACCATATTCCGAAATATGGGATGATAagattcaaaaaaatgttttaaatactgatTTTAACGATTCTAATTTGAATTTAGatttttcaaatcaaattttaagtgaagggcAATTTTCAGATAGTCAAGTTAATAATTTAAGTAGTATTTTGGAACAAGCAATGAATAATACAGCTACTTGTGATATTTTGTTGCCAGAAAATACTAATTTAGATGTACAGAATACAGACGGATTTCTTCAAAATTCTTATcagtttttatga
- Protein Sequence
- MYRNIPVSDVQFPNDFQNYLHQNEIKTDARSKRKRTVKLKNHSENLKRGVFRCKSCGTVWKTKQLFLKHLSTHMGTPISCTKCKKSFNSRMAYTCHISLKLCETQTKLIRYQCDQCPRFFRFKRHIERHLEGHKRNNCTYCEVKLTNRIKLIEHLQTVHSIKLERAVLHKCDHCEKRYVKKRSLYYHLKQHADNKIVCLECGWMSLTQEEHNVHYAGHDKDFPFKCERCNDRFSRRQQFLVHMKRHDRYKCYTCNESHASRAQILRHKQRGHSVQRLEPQLKCPHCPNAFQRRLALQMHLKKHTEDKPMHCKYCDISFRSPYLYFKHCASTTHEINSPEKQQLVCEICGKLFMKKYQLEQHLQRVHNQNKQIFSCDYCKHTTNNRKNMLRHMSIHLEDKKECVCEQCGKAFYNLTTLKDHMLYVHSQERHFKCTQCDKAFKRNSELVRHQSCHSEVRPHVCKTCGVSYKRSTHLRRHEESQHGTVTNTRRVQRLKKDENGTLVPIQEEKKPRQKSKKKQKTDPKQVFSIMDTQSGEMMTFTIPQIENNLTTVLSINQPYGQELIQTVTLPYSEIWDDKIQKNVLNTDFNDSNLNLDFSNQILSEGQFSDSQVNNLSSILEQAMNNTATCDILLPENTNLDVQNTDGFLQNSYQFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -