Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_963971575.1
Location: OZ020623.1:30211804-30233335[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.013 3.2 10.3 5.3 1 23 412 434 412 434 0.99

2 8 1.3e-06 0.00032 22.9 1.4 1 23 440 462 440 462 0.98

3 8 2.6e-05 0.0062 18.8 3.1 1 23 468 490 468 490 0.98

4 8 2.2e-06 0.00053 22.2 4.2 1 23 496 518 496 518 0.98

5 8 1.2e-06 0.00028 23.0 4.1 1 23 524 546 524 546 0.98

6 8 0.00034 0.083 15.3 7.7 1 23 552 574 552 574 0.99

7 8 2.7e-06 0.00064 21.9 1.0 1 23 580 602 580 602 0.99

8 8 3.3e-06 0.00079 21.6 2.3 1 23 608 630 608 630 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.013	3.2	10.3	5.3	1	23	412	434	412	434	0.99
2	8	1.3e-06	0.00032	22.9	1.4	1	23	440	462	440	462	0.98
3	8	2.6e-05	0.0062	18.8	3.1	1	23	468	490	468	490	0.98
4	8	2.2e-06	0.00053	22.2	4.2	1	23	496	518	496	518	0.98
5	8	1.2e-06	0.00028	23.0	4.1	1	23	524	546	524	546	0.98
6	8	0.00034	0.083	15.3	7.7	1	23	552	574	552	574	0.99
7	8	2.7e-06	0.00064	21.9	1.0	1	23	580	602	580	602	0.99
8	8	3.3e-06	0.00079	21.6	2.3	1	23	608	630	608	630	0.98

Sequence Information

Coding Sequence: ATGGAAGAGATACAGTCTATAGAGGCATTGCAGGAGATCTACATTAACAGTTACACAGTAAAAACAGAAATGGAGGACAATAGTTATGCAGGAATCCGAGATAGAGTAACAGACGAGATATATCATGTTAACACCAACATAGGGAAGATTCAGTGCAAGTCTGAACCTGCAGACACCAGGGCATGTGAAGGAGATGCAGTGGAGAGTGCAGCTGTCGCAAAAACCGGAACTAGAGTTGGAGCTACAGGCGACATGTACCGCTACTACCCTCAATCAAACATAATCATCACAGAGGAGAtcgacatcaagtctgaacctgttgACACCATTAAATGTGAAAAAGAAGATCTGGCGAGTGCAGTTTTCACAAACACCGGTCATGATTATATTGTAATGAGTGGTGCACAGACTAATGACAATGATAGATATATATCGACAGAAAAGGAAGTTGCTGAAAATGGAAAATGTGCAGGAAGTAATTCATGCAATACTAGTGACAccattaaagaaaatttaatagatgAAGAGATTATCATAAAGCCAGAGCCTGAAGATACTCTAACATACGAAGAAGAAGAACTGCAGAATGAAAATGAAGTGAAAACTGAATTAGAGCCTACGTTAGCATGCCAGAATGATGTCAGTGGTACCGGCGAGGCATTTTCCGAGGTTGATCCTTTGCCTCTCAGTAACACCAGCTCTAATATCATAATAACAGAGGAAATTGGTATCAAATCAGACCATGAAGACGAAGGTGGATGTATCGAGGAAAACGAAGAGATTGCTTCTAACACAGATATTGATGTTAGTGTTACCGGCGAGATATTTTCCGAGGTTGATCCTTTGTCTCTCAACAACACCAGCTCTAATATCTTAGTAACAGAGGAAATTGATATCAAATCAGACCATGAAGACCAAAGTGAATGTATCGAGGAAAACGAAGAGATTGCTACTAACACAGATATTGATGTCAGTGGTACCGGCGAGGCATTTTCCGAGGTTGATCCTTTGTCTCTCAACAACACCAGCTCTAATATCTTAATAACAGAGGAAATTGATATCAAATCAGACCATGAAGACGAAGGTGGATGTATCGAGGAAAATGAAGAGATTCCTACAAACACAGATATTGaacCTCTGCCTTCTGCACCAAATGATAATAATTTGAAGGACATAGCAGTAACATCTGAAAGTATCAAAGAAAAACTGGTTTATAAACCTTATTTCAACATGTTCAAATGCAAACAATGCGATAAAGAATTTCTCCTTCATTCACGCCTTAAAAAACACGAGCGAAcccatactggagagaaaccattcagcTGTGATGAATGTGAGAAATCTTTCACTCAATCAAACAGTTTATTAGTCCATAAGAGAACACATTCCGGTGTGAAGCCTTTCGAATGTGACATCTGTGGAAGAACGTTCACTTATAATAGTGCCTTGACCTGCCACAGGAAGACACATTCTGGAgacaaaccattcaaatgtgaccatTGTCCTAAAGCATTTACTCGCCTCACGCATCTGACATTGCATCAGAACATCCACAAAGGACTCAAGCCATATGAGTGCACTGAATGTAAAAAGACATTTACCCGGCCGTCATGTCTCAAGACGCATCAAGTAACGCACACAAAAGCTCGACCCTTCAAATGTGACATCTGTCAGAAGACATTCTCGAGGGATCACTGTCTGTataaacacaaacgagtacattctggtgcGAAGCCGTATAAATGTGACTTGTGTGATAGGAAATTTTCACAGATCTCTAGCTTGGCTGCACATAAGAAGACTCACACAGATCTGAAACCGTTCAGTTGCGAGGAGTGCGGAAAAAAATTTGCCCAGTCTATGCATCTTGTACAACATAAACGCtctcattctggagagaaaccctttCCATGTAGTCAGTGTGgaAGTAATTCATGCAATACGAGTGACAccattaaagaaaatttaataaatgaagagATTATCATAAAGCCAGAACCTGAAGATACTGTAATAtacgaagaagaagaagaactgcACAATGAAGATGAAGTGAAAACTGAATCCGAGCCTACGTTAGCATGCCAGAATGATGTCAGTGGTACCGACGAGGCATTTTCCGAGGTTGATCCTTTGCCTCTCAACAACAACAGCTCTAATATCATAATAACAGAGGAAATTAATATCAAATCAGACCATGAAGACGAGCATGAAGACGAGCATGAAGACGAAGGTGGACATATCGAGGAAAACGAGGAGATTGCTACTAACACAGATATTGGTCagtaa
Protein Sequence: MEEIQSIEALQEIYINSYTVKTEMEDNSYAGIRDRVTDEIYHVNTNIGKIQCKSEPADTRACEGDAVESAAVAKTGTRVGATGDMYRYYPQSNIIITEEIDIKSEPVDTIKCEKEDLASAVFTNTGHDYIVMSGAQTNDNDRYISTEKEVAENGKCAGSNSCNTSDTIKENLIDEEIIIKPEPEDTLTYEEEELQNENEVKTELEPTLACQNDVSGTGEAFSEVDPLPLSNTSSNIIITEEIGIKSDHEDEGGCIEENEEIASNTDIDVSVTGEIFSEVDPLSLNNTSSNILVTEEIDIKSDHEDQSECIEENEEIATNTDIDVSGTGEAFSEVDPLSLNNTSSNILITEEIDIKSDHEDEGGCIEENEEIPTNTDIEPLPSAPNDNNLKDIAVTSESIKEKLVYKPYFNMFKCKQCDKEFLLHSRLKKHERTHTGEKPFSCDECEKSFTQSNSLLVHKRTHSGVKPFECDICGRTFTYNSALTCHRKTHSGDKPFKCDHCPKAFTRLTHLTLHQNIHKGLKPYECTECKKTFTRPSCLKTHQVTHTKARPFKCDICQKTFSRDHCLYKHKRVHSGAKPYKCDLCDRKFSQISSLAAHKKTHTDLKPFSCEECGKKFAQSMHLVQHKRSHSGEKPFPCSQCGSNSCNTSDTIKENLINEEIIIKPEPEDTVIYEEEEELHNEDEVKTESEPTLACQNDVSGTDEAFSEVDPLPLNNNSSNIIITEEINIKSDHEDEHEDEHEDEGGHIEENEEIATNTDIGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -