Lhae012043.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- salm
- Assembly
- GCA_963971575.1
- Location
- OZ020611.1:183540574-183581312[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1 2.5e+02 4.3 0.1 2 20 69 87 68 89 0.90 2 10 5.4e-06 0.0013 20.9 0.9 1 23 390 412 390 412 0.98 3 10 1.1e-05 0.0026 20.0 2.1 1 23 418 440 418 440 0.98 4 10 0.068 16 8.0 3.8 2 23 744 765 743 765 0.98 5 10 4.7e-08 1.1e-05 27.4 0.6 1 23 771 793 771 793 0.97 6 10 6.5e-05 0.016 17.5 2.6 1 23 803 825 803 825 0.98 7 10 0.0028 0.67 12.4 2.1 2 23 1083 1104 1082 1104 0.97 8 10 0.078 19 7.8 1.0 1 13 1110 1122 1110 1124 0.92 9 10 1.5e-06 0.00036 22.7 4.0 3 23 1277 1297 1275 1297 0.96 10 10 1.6e-07 3.9e-05 25.7 0.8 1 23 1303 1325 1303 1325 0.98
Sequence Information
- Coding Sequence
- ATGACCTGGAAATGGAAGTGGATAAGACACACACTGAGTAAACCTGATAACACTGCAGGCTCCAAACAGGTTTTCTCAATGACCAACGGTTTGGAGAATAAACAAAGGACAGAAGAGACTGGAAgtgatAGTCCGGCATCATGTTCGGAGGAAGACGTGAGTTGTGGAGTCCCCGTCGACGCGAGTATCGTTACAGAACCCCTCACATGTACGAGATGTCAAGAACAATTCACGAATGTCCCAGAATTCCTGTCACATAAGGCCGTCTGCGAGAGACAGGCCTTTCAACACCTAAACCTCACACCCTCAGACTCCGAAGACATGGTCATATCAGAATACGATGAAGAAGAGGATGAGGAAACGGGAGGCAAAAGACTTGAAAAAGACCGACGGCATAGGCAGGATGCCGCCAATAATAATAGTGTAGACGAAGAAGAAGGAGAGAGAGAAATAGACGGATTACCGGTCGAGTTCCCTTTTCCATTGCCATCATCAACGAGTCATGTTACGTTGGAGGCATTACAAAATACCAAAGTGGCCGTCGCTCAATTCGCAGCGACAGCGATGGCCAACAACGCTGACAACGAGGCAGCGCTACAAGAGCTAGCCGTGTTACAATCCACCTTATTCACACTGCAGCATCAGCAAGTGTTCCAGCTTCAACTCATCAATCAGTTACAGCAACAACTCACCATCAACAGAGTTAACAAAGACGGCAGTCCTACATCACCCCTTACGGACCAGCCTAACGAACAATCCACAAATGAGGAGTCCCCGGAGAGACCCTCGACACCGTCCGAACCAAGGGAACCAACCCCGCCACCGCCACCGCCACCTCCATCCACATCCGTTCCTCCACCACCTCCTCAAGAACCCACGGACACACCGATTACCGAGCCTTCAACCCTACCATTGTCCATCCAACCAAACATGTGCTCGATATCATCATCACTTGCTGCGTCTATCATAACAAACAACGATCCACCACCTTCACTCGACGAGCCTAATACATTAGAAATGCTCCAAAAAAGAGCACAGGAAGTATTGGATAACGCCAGCCAAGGTCTCCTTGCCAATAATTTAGCAGATGAGTTAGCGTTCAGGAAAAGCAAAGGTTCACTATCACCGTACGATTCAAAATCAGGTAGAAACGAACCATTTTTCAAACATCGTTGTAGATATTGTGGGAAAGTATTCGGTTCAGACTCGGCATTACAAATTCACATACGATCTCATACAGGCGAACGGCCATTTAAATGTAATGTGTGCGGCAGTCGCTTCACAACAAAAGGAAACTTAAAAGTTCACTTCCAAAGACACACAACCAAATTCCCTCACATCAAAATGAATCCTAATCCAGTACCGGAGCATTTAGACAAATACCACCCACCTCTGTTAGCTCAGATGGGTCAGTCTGGAGGAATGTCTCCAGGACCACCAGCACATCATCCAGCCCACGCCTTCTCACCAGGAAATCCATTTCCTCCAACATCAATGCCGGTATATCGACCGCCAATGCCACCAACAGATCTCATAACACCCCGACTTCCTACCTCCCTCCAGAGACCGGAAGGACCTAACCCTAGAATACTCCCATCATACCCGCTCTTCGTAAGACGAGAAGAACAAGACGTACCAGAAAACTTAACAAAACCTCCAAGCTCCCCTTCACCGGAAACTCATATGAAAACAGAACCAATGGACGATAGAGAAATAGAAGAACCAAAAGAACCACAACCACCCATAACGCCAAAACAAGAACTCGATATGTATAACGAGGAACTAGAACAAGAAAACATGCAATCACCTGGTTTATACGATGACTGTAGTATGGATAGTAAATATAGTAATGAAGAATTATTGAGGGTGAGAAGTCCATTAATGGAACATGGAGATAACATGCAAGATGAACCTGagaatttatcaaataaaagtaattcAGTAACAATGCCATTAAGCATATCAACCGGTCAAAGACTGCCAGCATCATTTAATTTTCCCCACGCATCATCACCACCAAGTAGTACGTCTTCCGGGAGTATGGGTTCATTTTCAATACCATGTGGTACTGATCCTGCCAAAGATCCTGCTTTGTACACTAGCCTGTTGCCACGACCAGGAAGTAACGACAATTCATGGGAGAGTCTTATTGAAGTAACAAAAACATCAGAGACAAGTAAACTGCAACAGCTAGTTGATAACATAGAACACAAACTGACTGATCCTAACCAATGTGTGATATGCCATCGTGTTTTGTCTTGTAAGAGCGCTCTCCAAATGCATTATCGAACACATACAGGAGAGAGGccgtttaaatgtaaaatatgcgGTCGAGCATTTACCACAAAGGGAAATTTAAAGACGCACATGGGTGTCCATCGAGCGAAACCACCAATGCGAGTCTTACATCAATGTCCTGTATGTCATAAAAAGTTCACCAATGCCTTAGTCTTACAACAACACATAAGACTACACACTGGGGAACCAACAGACCTCACGCCAGAACAAATACAAGCAGCAGAAATCAAAGAATTTTCCTCACCAACTTTCCCCGGCATGCCAAATTCTGTCAGTCCTTTCTTGACTCAACACATACAAATTCCAGGTCTCTCACCATTAACCGCGACGAATCTCTCCCTAAACATGAAATCAAATGATATGGATATGAAAGAAGatcaagaagaagaagaagatatggACAAATATGATATGTCAAACGAAAAATTACCATCATTTTCAACATCTCTTGCAGCGTTAGAGAACCAAGTAAAAACAATCACAACAATGGCATCACAGTTAACAGCATCAAATCGTCAAGAAGAAATGTTATGTTCCTCAAGGATAATGACCTCAACACCAACACCACAAAATGGGGAAAAATCTCCAACACGTTCAGAAGTTGAAAGTCCAACTGGATCTGATATTAGATCATCGCCAAATCAAATGCCCGTCCAgataccTCGCCCGCCATCGTCCCAGCCAATGAACAGTCCCACGCCCAGTGAATCAAATTCCTTGGGAGCGCTAGATCTGACGCCACGCAGTACGCAACCTTTGTCGCATAGTCCTGGGCCATCACCTGGTCCACAACCCATCTTCTCGAATTTTCCCGGATTGATGCCACCAGGTCCAGGTTCATCACCACTTATATCATCAGCGCTGTCTTCACTAACGAGTTCAGTATTAAACTCCACGGCGTATAGTCCTCTAGGTTTAGGCGTTGGTCCAGCACTTCGCGGCAACACGACATGCAACATTTGCTTCAAGACTTTCGCCTGCAACTCAGCTTTGGAGATCCACTACAGAAGTCACACGAAAGAGAGGCCTTTCAAATGCACTGTTTGCGACAGAGGATTTTCAACAAAGAATGGTCCTGGATGTACGTGTGGACAGAGGCGTATCCAGGACGGCGGCAGCCAAAAACGTAAGAAGGTGGGAAAGAAAAAATCACCCCCACCTTCCCCCAAGATACTCTCTTCTAAGTTACTCCCACTAGTGCTGGTCCCTGGATACGCCACTGCCTCCGAATGGAGTCCCTTGTTGggaaatatgAAGCAGCACATGTTGACACATAAAATCCGTGATATGCCGCACCATATTTTCGACAAACCACCTAATATGACTCCTCAACCCCCCGAGGAAGCATTACCAGCAAGTATTCCACGGGAAATTCCCATGCCACCTCATCCAGCGGCTGTAGAACCAACGTTACCTCCTCCACCACCAGAACTGACGCTGAAACCGGATATTAGTGTCAAAAGATCTACTTCTGAATCGGAGTTACCTATTCCTAAACGAAACCCTAACATGCAGAGCAGTAAGCATTTGTGCCACGTGTGCAATAAGAACTTCTCGTCCAGTTCGGCGCTGCAGATACACATGCGTACACACACAGGAGACAAGCCGTTCAGGTGCAACGTCTGTCAAAAAGCCTTCACCACTAAAGGGAACCTGAAGGTACACATGGGAACACATATGTGGAGCAACGGTGCATCCAGACGAGGGCGCCGCATGTCCTTAGACCTCCCACCAATACCCATGACACCCAAGGATTCAGAATTTCTGCAGCGGAGGCCCGACCTTTTCTACCCATACCTCCCAGCTCCATTCCTTAATGGCATGCAACAAAAGTTAAATGAAATCTCAGTGATCCAAAACGCGAACAACAGTACTGGAAAGTACACTGGTCTTCTGGGTTTCGGTTATCCACCGCCTGGAGATGCTCATCGATCTCAATCGGGTTCTCCATTGTCGGAGAAACCGTCCACACGTCCCCCGAGCCACGAGGCGGTGGAATGCGGCCGCGAACTGCCCAGGATGTGGGACCTGCACTACGAACGAAAACCCGCCGCTGAGCAATCCCTCGACATGTCTGCCACCGCCCCGAACAACCCGCCACCATTGAGCCTGCCGCCACCGCCAAGAGGCGAGGGTCTTGCCGCATGA
- Protein Sequence
- MTWKWKWIRHTLSKPDNTAGSKQVFSMTNGLENKQRTEETGSDSPASCSEEDVSCGVPVDASIVTEPLTCTRCQEQFTNVPEFLSHKAVCERQAFQHLNLTPSDSEDMVISEYDEEEDEETGGKRLEKDRRHRQDAANNNSVDEEEGEREIDGLPVEFPFPLPSSTSHVTLEALQNTKVAVAQFAATAMANNADNEAALQELAVLQSTLFTLQHQQVFQLQLINQLQQQLTINRVNKDGSPTSPLTDQPNEQSTNEESPERPSTPSEPREPTPPPPPPPPSTSVPPPPPQEPTDTPITEPSTLPLSIQPNMCSISSSLAASIITNNDPPPSLDEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSKGSLSPYDSKSGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTTKFPHIKMNPNPVPEHLDKYHPPLLAQMGQSGGMSPGPPAHHPAHAFSPGNPFPPTSMPVYRPPMPPTDLITPRLPTSLQRPEGPNPRILPSYPLFVRREEQDVPENLTKPPSSPSPETHMKTEPMDDREIEEPKEPQPPITPKQELDMYNEELEQENMQSPGLYDDCSMDSKYSNEELLRVRSPLMEHGDNMQDEPENLSNKSNSVTMPLSISTGQRLPASFNFPHASSPPSSTSSGSMGSFSIPCGTDPAKDPALYTSLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFTNALVLQQHIRLHTGEPTDLTPEQIQAAEIKEFSSPTFPGMPNSVSPFLTQHIQIPGLSPLTATNLSLNMKSNDMDMKEDQEEEEDMDKYDMSNEKLPSFSTSLAALENQVKTITTMASQLTASNRQEEMLCSSRIMTSTPTPQNGEKSPTRSEVESPTGSDIRSSPNQMPVQIPRPPSSQPMNSPTPSESNSLGALDLTPRSTQPLSHSPGPSPGPQPIFSNFPGLMPPGPGSSPLISSALSSLTSSVLNSTAYSPLGLGVGPALRGNTTCNICFKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKNGPGCTCGQRRIQDGGSQKRKKVGKKKSPPPSPKILSSKLLPLVLVPGYATASEWSPLLGNMKQHMLTHKIRDMPHHIFDKPPNMTPQPPEEALPASIPREIPMPPHPAAVEPTLPPPPPELTLKPDISVKRSTSESELPIPKRNPNMQSSKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCNVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISVIQNANNSTGKYTGLLGFGYPPPGDAHRSQSGSPLSEKPSTRPPSHEAVECGRELPRMWDLHYERKPAAEQSLDMSATAPNNPPPLSLPPPPRGEGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -