Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: RREB1
Assembly: GCA_963971575.1
Location: OZ020617.1:40020642-40025947[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 8e-05 0.019 17.3 1.2 1 23 70 92 70 92 0.98

2 16 6.2e-05 0.015 17.6 0.3 1 23 104 126 104 126 0.97

3 16 5.2e-06 0.0012 21.0 3.7 1 23 132 154 132 154 0.98

4 16 1.2 2.9e+02 4.1 0.0 1 20 226 246 226 250 0.72

5 16 0.011 2.7 10.5 2.3 2 23 256 278 255 278 0.95

6 16 1 2.5e+02 4.3 0.0 1 20 331 350 331 352 0.93

7 16 0.075 18 7.9 0.1 1 23 485 507 485 507 0.96

8 16 1.5e-05 0.0037 19.5 0.7 1 23 517 539 517 539 0.99

9 16 0.00086 0.21 14.0 3.1 1 23 545 568 545 568 0.97

10 16 0.00074 0.18 14.2 2.8 1 23 957 980 957 980 0.96

11 16 0.00019 0.047 16.0 0.4 2 23 1223 1244 1222 1244 0.97

12 16 0.13 31 7.1 6.3 1 23 1250 1273 1250 1273 0.97

13 16 0.2 49 6.5 3.0 1 20 1304 1324 1304 1328 0.94

14 16 0.16 39 6.9 0.5 1 23 1381 1404 1381 1404 0.94

15 16 0.017 4.1 9.9 0.5 3 23 1451 1471 1449 1471 0.93

16 16 0.017 4.1 9.9 7.9 1 23 1477 1499 1477 1499 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	8e-05	0.019	17.3	1.2	1	23	70	92	70	92	0.98
2	16	6.2e-05	0.015	17.6	0.3	1	23	104	126	104	126	0.97
3	16	5.2e-06	0.0012	21.0	3.7	1	23	132	154	132	154	0.98
4	16	1.2	2.9e+02	4.1	0.0	1	20	226	246	226	250	0.72
5	16	0.011	2.7	10.5	2.3	2	23	256	278	255	278	0.95
6	16	1	2.5e+02	4.3	0.0	1	20	331	350	331	352	0.93
7	16	0.075	18	7.9	0.1	1	23	485	507	485	507	0.96
8	16	1.5e-05	0.0037	19.5	0.7	1	23	517	539	517	539	0.99
9	16	0.00086	0.21	14.0	3.1	1	23	545	568	545	568	0.97
10	16	0.00074	0.18	14.2	2.8	1	23	957	980	957	980	0.96
11	16	0.00019	0.047	16.0	0.4	2	23	1223	1244	1222	1244	0.97
12	16	0.13	31	7.1	6.3	1	23	1250	1273	1250	1273	0.97
13	16	0.2	49	6.5	3.0	1	20	1304	1324	1304	1328	0.94
14	16	0.16	39	6.9	0.5	1	23	1381	1404	1381	1404	0.94
15	16	0.017	4.1	9.9	0.5	3	23	1451	1471	1449	1471	0.93
16	16	0.017	4.1	9.9	7.9	1	23	1477	1499	1477	1499	0.98

Sequence Information

Coding Sequence: ATGGAAGACTCATTTAACGAGACCAAAGAAAGCCAAAGACGTACGGATACCGAAGAAAGTATGTTGGAGAGTAGTTCTGCAGTATCCGAAAATTTGCACACGACAGCATCAACGAATGAGTCGGATTTAGAGCCTATGGACATTAGCAAAACTGCATCAGACAGCGATAACGCTAGCAACTGCAGCTCACCATCAAGTGACACTAAATATTTCTGCCCGATATGCGATATCACCCTTACTTCTCAACACGAATTTACATTGCATATTCGTTCTCATAACAATGATAACGAAATAATATCAGAAAAAGGTTTTATTTGTAGAATTTGCTCAAAAGTATTGAGTTCTAGTTCGAGTTTAGACAGGCATATGCTTGTTCATAGTGGTGAACGACCATTTAGTTGTAAAATTTGTTCAGTTACTTTTACAACAAACGGAAATATGCATAGACACATGAGAACACATACTCATAAAGGAGGTGAAAATTATGAATCGGATGGAAGTACAGATAGCAATAACAGTAATAACTCAGGAAGAAGGAAAAGAAGGTTGgaatttaacaacaataaattagtaGATAACAAAAGAAAGTCTGATAATTATAACGAAGATGAAGCAACAccgagaaaaacaaaaaatttaaacaataataatatcaacGAAAATCTAACCCAAAAATTCCGCTGTCCTGTTTGTGGTAGAGAAGATTTTGCTTCCCTAAATGTTCTTGAATTACATCTCGAAGATAATCATCCAGATTTTGAAGTTAAGTGTACATCGTGTAATTTGAGTTTTAAAAACCATCGTGCTCTGAATCTCCACCGTTATATGGTACATtcatctgaaaaaaataatattaataacaaaaatttaaggAACTCTGTTGTTGGCTTTAAGGATTTGACTTTTGTAGATTTTTCTAGTGAAAAATTCCCACATATAGCAAGATATGCCTGTGAGAAAAGTCTTCATAAACCAGTAACAGGACAGAAGTTCATTTGCGACAATTGTACATTAGCCTTTCCATGTGCTAGTGCTTTGGAAATTCACCAAGAAGCTTGTCTGAGAAAGAGAGATGAAAGCTTTAATGACAGTGAAAATCCAACTGATTTATCCAGAAAATCCGAATCTTCTGAGGAAGACATTCGACGTGAAAACTTCTTTGCTCACTTGGACTTGCAAAACAAGTCCCCTCCATGTTCTCCAACTAACGAAGAAActaaaatcaaagaaaaaccAGCTGAAGTAAAAGCTCCAATAGATTCCAAAGACCTAGCTGATATCCAGTCTATCATTTCAATGACCTCTAATGGAAGTCTTCTTCAGCACCTTCGCGCTAAACCATCTCCTGAACTATTACCAGTTCCCACTGAAACTCCTCCAAGAGAACCCCAGGAAGAAGAAAGTCAAGATGTTTTCGCTGCTGAATTTAGAAAGATGAAACTTCGCGGAGAGTTTCCATGTAGGCTCTGCACTGCAGTATTTCCAAACTTACGTGCTTTGAAGGGGCACAACAGGGCCCATTTAACAGGGACTGGTAATACAGGGCCTTATCGCTGTAATATGTGCCCTCATAGTTCTGTGGACAAAGCAGCTTTAATAAGACATATGAGATCTCACAATGGTGACCGTCCTTATGAGTGTTCACTTTGCAATTATGCGTTTACTACAAAAGCAAATTGCGAGAGACATTTGAGGAATAGACACGCAAAAGTTACTCGCGAAGAAGTTAAAAAGGCTATCATCTATCATCCATCTGAAGACCCAACTAATGATGATAATAAACTTAACACTTCTCGTGATGAGATGAAGAGATCTTTCTTCAATAGTTCTAACGAAGAAGAACATCAAGAAAGAATAAATAGCTCCACGCCAAAAGAAAATAGAATCGCACCTGAGGCAATGGGACTTTTGATGCCTAAAGACTTGGGAATTAAAATACCACCTACTCTGCTCCCTCCAGATTTACCAATAAGCTTCCCAATGCATAAGGAACATGCCCCATTTATTCAAGTAAACAAAGAATTGGCTGtacttaaagaaaaaattatgccCAAAGATGAGATTATGAAACCTTTCAATATTCTCCGTGAAAAAATGGAAGAGTCTTTCAACATCAAGAATAATTTCCAGAGTGTGGATGGGTTGAAACAAATCCCTGAATACGATATTCCATCGGATGATGAAACAGAAGAATCTTCTCAGAATCATTCCTCGAGTTATGAAGATTATAAGAGTGAGCATCCAATTGATTTGAGCATGGATGTATTGGATTTAAGTAAAAAGAAATCTCCACCACCTGTGAAGAAAGACGAACCGGTAGATTGCACTAAAAAGACACTTGAAGCAAGCATACCTCCTGCGATGACCCAAGCAGCTTTATCGCAATTATTTGCTCAACAACTCCTCAAAAATCCCTTCTACGCAACACAACTTTCCCAATATTATCAAAATCCAGCTGTTTTTCCCTCTCTACAAAATTTGGCAATGCCTCAAATGCCATTATCACCTTTTCTATTTCCACATACTTTCCTCAATTCAAATGCTGCTCAAGAGATGAAAGATAGGATGCTTCGCATACAGTTGCAAAGTGGAGGAACGATCATCAGCGATCAGTTTTCTCCTGACAGGCTACAATCATTCCAACCACAACCTGTAAATGAAATGAAGTTTTCaccaaaagaagaagaaattaaACCACCCCTACATATTAATACACATTTAGGGGATTCTGTGAACAAAATGCATTCCCCTAAACCACAGCAAAAGACACCAGACATGTCTCATAGTCCTaatagtgtgaaaatggtgaTTAAAAACGGGGTACTGATGCCAAAACAAAAGCAACGAAGGTACAGAACTGAAAGGCCGTTTTCCTGCGAGCATTGCTCTGCTAGATTCACACTTAGATCTAATATGGAACGTCATATTAAGCAACAACATCCACAATTTTGGTCTCAGAGACAAAGATCTGGAATCTCCACCGCTGGGAGGAAGCCGTCAGGGCCAACCCCAACACCACCTCTAACTACTAACAATAAACCACCTTATTACGACCTAAATATACCAAATTATGATATGTATGTACCAAAGATGCAAGATACGTTAGTCAACGATACCAAAGAAAAAGTTAAATTCGCTATTTTAGCTCAACAGTTAAAAGCTAAAGACTTTTATAACGAGCAATGTTATCCCTCACCCACCAAAGATAAACCAGATGAAGATGAAGATGCTCTTGTTATTGATGAAGAAGATGATAAGAGTTCTGTAAAGCAAGAAACCAAAGAAGAAcctaaaaatgatgaaaaaccAAAAACTCTTGAGGAAAAAATGTTTGAATTGAGACAAATGAGAGAGAATGAAATCAAAAAAGTTGGTGATTTGTTGAAGATTGCCAAGACTGAAGAGGGACAGGATCTTGTTCCAGTTTCCCGATTGCTTGATAATGCTAATAGTTCTATGCCCTTTCGCGAGTTTTTTCGCCGCGAAGGAGAAGACCATGAAGGTGGGGGCGTAAGCGAAGAAGACGAAGAAGGATTGGTAGCGAGCGGCAGTACTAGCGAAGGAAATGGATCTAGTGGAGATGAAAATAAATCTGAAAATGAGCAGACTTCAACCAGCGAAGCTACAAAAAAGAAGTCCGCATACTCCCTGGCTCCGAACCGTGTGAGTTGCCCATACTGCAACCGTAAATTCCCCTGGACATCTTCACTGCGTCGTCACATTTTGACCCATACCGGacagaaacctttcaaatgttcacATTGTCCACTTCTCTTTACCACCAAATCAAACTGTGACAGACATCTCCTTCGTAAACACGGCAATGTCAATCTCCAAAATTCCGAATCTTCAACTCAACCGaataacaaaaatcaaaactaTATGATGAGAAACGTGCCAGAAAGACCATACAAATGTTCCAGTTGCCCAAGTTCGACTTTTGCAACTTTAAGTAATCTCAATAAACACATGTCTTGCAAACATACGCAAAATGATAGACCTCCTAGTATTGAATATGAAAGTCATGGAAGTTCTGAGGATGAAAGAGCTAAAGAAATGAAGACAGATAAAGATTGGGAAACTCAAATATCCCAAAGTAAAGTTCTCAATGACCAAACACCCCAAAATGCTGATTTACCATTCAAATGCCACCTTTGTGAAGGTTCTTTTTCGGAAAGACAGGAAGCTTTGGATCATATCAAAGACATTCATGTTTCTGAGTTTGAATTGTTGATGTCTAAAGGTGCTTTAGATCAGACTGTAACGGAAGAGGTGCAGCAGAATCATGAGACAGAAGATGATGATCATTTACGGGGAAAATTCCCGGATTACGCGAATCGGAAGGTGATGTGTGCCTTTTGTATGCGTCGTTTTTGGTCTGCTGAAGACTTGCGTCGTCACATGAGAACACATACTGGAGAACGACCATTTTCTTGTGATGTATGTCACAGAAAATTCACCCTTAAACACAGCATGTTGCGTCACCGGAAAAAACATAACCTCACAAATCCCGTTGAAGAAAATGTAATGGTAAGTGGGGACGAAGAACCCACCCAAGTTCTCTATGACAgacttaatattaataataacaatatagaAGGAAAGAGAGAAGAGAAATCAGATGATTCAGAAGGTAATGAAGGAAATGATTTAATCGGTAACTTATTAGGTATACGTGATAAATCGATTATAGATCAAGTACTTGTTTCATCAGCGGATGATGCTGCTAAGTTACTTGGTGTGAATAATGGACAAGAGTGA
Protein Sequence: MEDSFNETKESQRRTDTEESMLESSSAVSENLHTTASTNESDLEPMDISKTASDSDNASNCSSPSSDTKYFCPICDITLTSQHEFTLHIRSHNNDNEIISEKGFICRICSKVLSSSSSLDRHMLVHSGERPFSCKICSVTFTTNGNMHRHMRTHTHKGGENYESDGSTDSNNSNNSGRRKRRLEFNNNKLVDNKRKSDNYNEDEATPRKTKNLNNNNINENLTQKFRCPVCGREDFASLNVLELHLEDNHPDFEVKCTSCNLSFKNHRALNLHRYMVHSSEKNNINNKNLRNSVVGFKDLTFVDFSSEKFPHIARYACEKSLHKPVTGQKFICDNCTLAFPCASALEIHQEACLRKRDESFNDSENPTDLSRKSESSEEDIRRENFFAHLDLQNKSPPCSPTNEETKIKEKPAEVKAPIDSKDLADIQSIISMTSNGSLLQHLRAKPSPELLPVPTETPPREPQEEESQDVFAAEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLTGTGNTGPYRCNMCPHSSVDKAALIRHMRSHNGDRPYECSLCNYAFTTKANCERHLRNRHAKVTREEVKKAIIYHPSEDPTNDDNKLNTSRDEMKRSFFNSSNEEEHQERINSSTPKENRIAPEAMGLLMPKDLGIKIPPTLLPPDLPISFPMHKEHAPFIQVNKELAVLKEKIMPKDEIMKPFNILREKMEESFNIKNNFQSVDGLKQIPEYDIPSDDETEESSQNHSSSYEDYKSEHPIDLSMDVLDLSKKKSPPPVKKDEPVDCTKKTLEASIPPAMTQAALSQLFAQQLLKNPFYATQLSQYYQNPAVFPSLQNLAMPQMPLSPFLFPHTFLNSNAAQEMKDRMLRIQLQSGGTIISDQFSPDRLQSFQPQPVNEMKFSPKEEEIKPPLHINTHLGDSVNKMHSPKPQQKTPDMSHSPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQFWSQRQRSGISTAGRKPSGPTPTPPLTTNNKPPYYDLNIPNYDMYVPKMQDTLVNDTKEKVKFAILAQQLKAKDFYNEQCYPSPTKDKPDEDEDALVIDEEDDKSSVKQETKEEPKNDEKPKTLEEKMFELRQMRENEIKKVGDLLKIAKTEEGQDLVPVSRLLDNANSSMPFREFFRREGEDHEGGGVSEEDEEGLVASGSTSEGNGSSGDENKSENEQTSTSEATKKKSAYSLAPNRVSCPYCNRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVNLQNSESSTQPNNKNQNYMMRNVPERPYKCSSCPSSTFATLSNLNKHMSCKHTQNDRPPSIEYESHGSSEDERAKEMKTDKDWETQISQSKVLNDQTPQNADLPFKCHLCEGSFSERQEALDHIKDIHVSEFELLMSKGALDQTVTEEVQQNHETEDDDHLRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCHRKFTLKHSMLRHRKKHNLTNPVEENVMVSGDEEPTQVLYDRLNINNNNIEGKREEKSDDSEGNEGNDLIGNLLGIRDKSIIDQVLVSSADDAAKLLGVNNGQE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -