Lhae061453.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- prdm10
- Assembly
- GCA_963971575.1
- Location
- OZ020625.1:5223447-5254534[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00028 0.067 15.6 1.3 2 23 578 599 577 599 0.96 2 13 0.00027 0.065 15.6 1.1 2 23 624 645 623 645 0.97 3 13 0.03 7.1 9.2 1.0 2 23 676 697 675 697 0.92 4 13 0.00071 0.17 14.3 0.2 2 23 729 750 728 750 0.95 5 13 1.6e-05 0.0039 19.4 0.8 1 23 765 787 765 787 0.98 6 13 0.027 6.5 9.3 2.1 2 23 796 817 795 817 0.97 7 13 0.0048 1.2 11.6 0.1 1 23 824 846 824 846 0.98 8 13 0.0067 1.6 11.2 2.1 1 23 852 875 852 875 0.95 9 13 5e-05 0.012 17.9 0.3 3 23 882 902 881 902 0.99 10 13 2.1e-06 0.00049 22.3 1.8 1 23 908 931 908 931 0.95 11 13 0.0027 0.64 12.5 2.0 1 23 968 991 968 991 0.97 12 13 8.4e-05 0.02 17.2 2.3 1 23 1013 1036 1013 1036 0.97 13 13 0.0032 0.76 12.2 2.6 3 23 1076 1097 1075 1097 0.98
Sequence Information
- Coding Sequence
- atggacGGAAACGTTGAAAATACtgatgaaaatgaaataaacaacGTATTTCCAAATAATAGTTGGAATACTAATACACCAAATGCGAATTCTGCTAATTCTACGTTCCTGTTTATTGCTgTTGAGTACGTAGGTAAAGATGGCACAAATGAGTTCAAATTTGAGCCAGATGCCTCGTTCTCACCGCAAGCTACAAACTTTTCGGAGTTCGAGCAGCATGTCAGTCCGTTGGATCCAAACATGAGTTCGGCTGCGAGATATTCTCCCGTCTACTCAGATTCAGTGGATACTGGCTATAACAACTCCGTAGTGGTGTTGCAAGATGCTGTTAACCCTTTAATATCATCTGAAATATGTACCAATTCAGaattcgttaacacaaataacacgGCTTATAATCATTTACCAAGTCCGACTTCTCCATTAGATTCTATATCATCGCCGTTATCGACGTCCGATAATAACTTGTTGAGACAGGTCGTCGCTAACAGATATCTGCAGATGGTAACCACTAATGGAGTAGAAGTTGATGACGCCAGTTGCGGTTCAACCGGTCCGCCCGTTGTCGACTTCAACCAACGgtCACCAGATGACAGTCAAATCATAGACAAGGAACTACAATTAGTACAGTTTCCAGTGGATAACTATGGAGGACTTTCCATGGAAAGAAATCTCAAAGTAGATCCAGAACAAGTTGAACTACTAATCACCGATCAGAATACTGGAGTTTCATACAGCGGTTACATTTCACAGGACTTTCTTGTTGGACGAACTCCACTACCTAATCTTCCCGAGGATGAGTCGCATTTGAGTCAAGTTTTGAACACTTTAGGGACTCATGGGCTAGTGATGCAGCCCCAAGCAGATGGGGATATCACTGAAATGGAACCCCAGGGTGCTTCTCTTATGTCAGACGGACAGATGATGTTGCAAGATCCTTTGTTAGACACCGATTTGTTATTGCaagCTCCAGTAGAGATAGCTTTAGATGACACAGTCTTATCCACAAATACTTTGACTCTAAAACCAAATCACCATAATGGGTCTCTTCTAACTGTAAACCCGGTAGCAACTGAGGAAGTAATGCCTCAAATAACGATGGATCAGCAGGCTCAGATAATGTGTGACAGTCTCAATACCATGTACGTGAAGAAAGAAGAGATTATCGAAGATACTGAAGAAGATTTCGAGGCACAACAATTAAGGAGATCCAAGAGAAGTAAGGGAAGAATGGATGAAGATATACAAACATTAAATCGAGTTCAGACAATAAGCGACAAACCAGTACCATCCCGAGCTAGGGCAACTCTCCCAGCATCCTATCTCGTGATAAACAAATTCCCGACTGCTACCGAATCTGAACCCGAGTGTGGAGTTTTTGCCCGAAAAGTTATACCGAAAAGAACCCAGTTCGGGCCATTGGAAGGCGTTTTGCTTGACAGAATTAACGAAAACCAGACTTTTAAGTTATTCGTTGAAACAGAGACTGGAGCAATGAATCAACTGGATATTATGGATGAGAATAAGTCGAACTGGATGAGATTTGTACGTCCTGCTAAGAATTATGGTGAACTGAATTTGGTGTTGAGTCAGCAAGGACATAGTCTGTATTATACAACTACCAGAGCTATTCTACCACGACAAGAGTTATTGgTTGGCTACAGTGCAAACTACGCTGCTAAACGCAAACTTCAAGTCTTACAACCAAATCCTGAAGATGAAAATGGTTGGCATTGTTTTGAATGTCCTTCAAAATTCTCAACTTCGGAAGAACTGCAAAAACATCTCAACGTACATGATGAGAATAAAGAAGAGAATGCTAAACCAAGAGTTAAAAAATTCGGAAGACTTAAACGGAGACCAAATATTGAGTGTCCATTCTGTACGAgaatatttttcaagaaatatagtttaaataaacatttattgtcGCATACAAATCCAACAGTGTTTAGAGACAGGCAGATGAGACagattaaaagaaattttaacaaaacagaTGCTATTGAcAAAGCCCTCCAATGGAAATGCAACATATGTCATCTAATATTCTCCAATCCATCTCTCCATAATATTCACGAACTTGTCCATAAAAGTTCTTCGGAAGAAATAATAACTGGTCTTCCGCTGGATCTTGGTTCAGGTTGTCACGAAAGTGAATTCTTGATTCAAAGTGGAGCTGTACAATGCCCAGAATGTAGCAGAGAATTTTCTTCGCACACAGAATTAATTGAACATGTCGCTGAACATGGAAAACTTGTTGAAGAGAATACGGTGGATGTTCGGAAGGCTTTTAAATGTGTGATGTGTTATAAGGCTTTCGCAAATCGAGATAGATTACAGCGTCATATGCTAGTCCATGGATCTGAAGATTCCAAACCTTTAAAATGTGACGTCTGCAACAAGAGATTTTTGAACAATTCTGCATTGGCTTGCCATCTGAAAACACACAAAAGCGATAAGAAGATTTTTGAATGTCCAATTTGTAAAACTGCGTATGATCAAGTTCTTCTACTTAAAGAACATGTGAAGAGTCATTGTGAAAATGGATGCTACACCTGCCCACATTGTTCTAAGATTTTCAAAGAATACAGTATCATACGTAAGCATATTCGTGCTTTCCATTGCGATCGTAAACACGGTTGCCAATATTGTGGAAAACCATTTCCAACGCTTGACAAGTTGCGAATGCATCTTTTGAAACATTCAGATCACAGAGAATTCCTGTGTGCAGATTGTGGTAAACAGTTTAAGAGAAAAGACAAATTGAAGGAACATATGAAACGAATGCATGGTGCTGATAGGGAGCCCAAGTTTAATTTACCCAAACCAGTTAAGCAGAGTCCTCCAAAGAAGCCCTTCTTGCCTAAGgttcaacCAACAGATTATCACAGATTTATCTACAAGTGTCATACCTGCTTACTTGGCTTTAAACGTAGGGGTATGCTAGTTAATCATCTTGCTAAGAGACATCCAGATATCAGCCCAGATTCAGTTCCAGAATTGAATCTGCCAATCTTAAAAACTACTAGAGATTACTATTGTCAGTACTGTGATAAGgTTTACAAGAGCAGTTCTAAACGCAAGGCTCATATCTTGAAAAACCATCCAGGAGCTGAATTACCGATGTCTAATCGTCGTCGAGGTGGAGTCCCAGATATTCCAGGAGTACCAAATCCTACGTTCTCTCAAACTGTAGGCAGTGTCACTACGAATCCGCACGGCTGTCAGTGGTGCCATAAGCAGTACGCCAGCAAGGCAAAGCTACTGCAACACCAGAGGAAGAAACACCCTGAAGTTGTGCCCCAAGCTGACATTAAGAGGAAGATCAATAAACTGCCGGGTTCACCAGCTATTCCCGAAGatacaaaatatggaaaatctCCAGATATACCAAATGATTTAGGAGCTGTAGGGTCTTCAGGTATTATTGAAGATGCAGAAGTCACTGAAGAACAGCTTAACGCCCTCTCAGCTGGTGGTTTTATCCAGTGTGAAGATACTaaagttatttttgaaaatggatCTAAATGCAAGtTACAAGAAGATTCGTTACAACAACCGTTAGAATACATCGACTACCGCAACAACGGACAATATTACCGTATAATCCAAATGTCTGAAGACTTAAATCAAGACGACCCAGATGACCCACCTGAATCAAGTAGACTCTACAGACTCCTAACAACAAACGGTCCATTTCCGCCCTATCCACCACGCTGA
- Protein Sequence
- MDGNVENTDENEINNVFPNNSWNTNTPNANSANSTFLFIAVEYVGKDGTNEFKFEPDASFSPQATNFSEFEQHVSPLDPNMSSAARYSPVYSDSVDTGYNNSVVVLQDAVNPLISSEICTNSEFVNTNNTAYNHLPSPTSPLDSISSPLSTSDNNLLRQVVANRYLQMVTTNGVEVDDASCGSTGPPVVDFNQRSPDDSQIIDKELQLVQFPVDNYGGLSMERNLKVDPEQVELLITDQNTGVSYSGYISQDFLVGRTPLPNLPEDESHLSQVLNTLGTHGLVMQPQADGDITEMEPQGASLMSDGQMMLQDPLLDTDLLLQAPVEIALDDTVLSTNTLTLKPNHHNGSLLTVNPVATEEVMPQITMDQQAQIMCDSLNTMYVKKEEIIEDTEEDFEAQQLRRSKRSKGRMDEDIQTLNRVQTISDKPVPSRARATLPASYLVINKFPTATESEPECGVFARKVIPKRTQFGPLEGVLLDRINENQTFKLFVETETGAMNQLDIMDENKSNWMRFVRPAKNYGELNLVLSQQGHSLYYTTTRAILPRQELLVGYSANYAAKRKLQVLQPNPEDENGWHCFECPSKFSTSEELQKHLNVHDENKEENAKPRVKKFGRLKRRPNIECPFCTRIFFKKYSLNKHLLSHTNPTVFRDRQMRQIKRNFNKTDAIDKALQWKCNICHLIFSNPSLHNIHELVHKSSSEEIITGLPLDLGSGCHESEFLIQSGAVQCPECSREFSSHTELIEHVAEHGKLVEENTVDVRKAFKCVMCYKAFANRDRLQRHMLVHGSEDSKPLKCDVCNKRFLNNSALACHLKTHKSDKKIFECPICKTAYDQVLLLKEHVKSHCENGCYTCPHCSKIFKEYSIIRKHIRAFHCDRKHGCQYCGKPFPTLDKLRMHLLKHSDHREFLCADCGKQFKRKDKLKEHMKRMHGADREPKFNLPKPVKQSPPKKPFLPKVQPTDYHRFIYKCHTCLLGFKRRGMLVNHLAKRHPDISPDSVPELNLPILKTTRDYYCQYCDKVYKSSSKRKAHILKNHPGAELPMSNRRRGGVPDIPGVPNPTFSQTVGSVTTNPHGCQWCHKQYASKAKLLQHQRKKHPEVVPQADIKRKINKLPGSPAIPEDTKYGKSPDIPNDLGAVGSSGIIEDAEVTEEQLNALSAGGFIQCEDTKVIFENGSKCKLQEDSLQQPLEYIDYRNNGQYYRIIQMSEDLNQDDPDDPPESSRLYRLLTTNGPFPPYPPR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -