Lhae024907.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020614.1:8333817-8336177[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.75 1.8e+02 4.8 1.5 2 23 275 297 274 297 0.93 2 12 0.0023 0.55 12.7 4.0 3 21 331 349 329 351 0.94 3 12 0.00013 0.03 16.6 3.6 1 23 357 379 357 379 0.98 4 12 4e-07 9.6e-05 24.5 0.4 1 23 385 408 385 408 0.97 5 12 1.2e-06 0.00028 23.0 2.4 3 23 542 562 541 562 0.98 6 12 4.9e-06 0.0012 21.1 2.9 1 23 568 590 568 590 0.98 7 12 1.9e-05 0.0045 19.2 0.3 1 23 596 618 596 618 0.96 8 12 5.9e-07 0.00014 24.0 2.1 2 23 624 645 624 645 0.97 9 12 0.00063 0.15 14.4 2.9 1 23 651 673 651 673 0.94 10 12 5.8e-07 0.00014 24.0 0.9 1 23 679 701 679 701 0.98 11 12 1.9e-05 0.0045 19.3 3.7 1 23 707 729 707 729 0.98 12 12 0.011 2.7 10.5 2.5 1 21 741 761 741 764 0.96
Sequence Information
- Coding Sequence
- atggatgTTTCACGATTAGTGGAACTTGTTGATTTCAAAATATGCCGAACCTGTTTGGCAGTTGACTGCGAAATGGTAGATGTTTATGACGACTCCGACAACAATTCAGGGTTAGAGGAACCGCTATGGATCAAACTTGAGACAATCACATCAACGCCTGTCACTGTGGATGATGGTTTATCGCCCCACGTTTGTTTAACATGTAAGACACGATTGAACGAGTCGTTTGCTTTTAAACAATTATGCCATCGTTCATTCGTAATGTTAAAACAATATACTGTCAATTCAGCGGTAAGTCAACTAAAATCACAGCTTAGTTTGCTGGATGGCCAAGAAGATCCATCTGTATTGACCAGGATTGAAGAAACACCTTGTGATTCTCAAGATCCCCAAGACAGTCCACCAGATGTTAACGAGGAAGAAATTGGACCAGgggaaataataaatattggattAAAAATGCCTGACTCCAACGAACAGACAGGCTCAGTAGCTGTCACTTCAGAGACACTTTCGGTTAGATCAGAGATGGTTACTCTCGTTAGTTCCCAGACAGAAACTGTCACAATTAGTTCTGAAACAGGAACTGTCATAATTAGTTCAGAGACAGAAGCTGTAGCCATAAGTTCCGAAACTGAAGCTCTTGCTGTTGGATCAGAATTGGAAGCTGTGACCCTTGAGACTGAACCTGTTGCCTTTAGTTCAGAGACAGAAACAGATAGATCTGCACTGGAATCTGTCATCAGTTCAGAAGTTAATGGAGAGATTGTACCTGCAGTTATCTCTGTGATAGAATTGTCTAACGGTAGTTCAGAGAAGAAATCGTGTAAACTGTGCAAGTTTACTGCAAGTTCCTCTCGTGGGCTATCTCTTCATATCGCCCATCTTCACAAACAGTTGAAAGGACGCTGGTGTAGCACATGTCAGTGTGAAGTAGATAATCTACGTCAACACAACATTGAAGAACACGTAGAAAAAGGTGATTATGGCTGTAATCTATGTAATAAAAAGTTCATATCTCAAGGTCATTTAAAAGAACATTTGCAGTGTCACATGAACGTTAGGCCATTCAGCTGTAGTCAGTGCAGTAAACAGTTTATTAGTTTACGTCATCTACGTGTTCATGAAAGAACACATTCAGGTGAACGACCATACATTTGTTCTTATTGCCCACGTGCGTTCACTCAAAGCGGATCACTACGTGTTCATATTCGATCACGTCATCCTGATCAGCCTGTTGCAGGCATGACTTGCAATCACCAATGTAATAGGTGCAAGAATAAGTATACAACGATTAAACGACTAGCCATACATAAAGTTAAAGTTTGTCATGACGATGACATTGACTATCCTGAAGATGTGGAAGATCGTGTAAAATATGTAGTTgctgttttgaataaaaattcaaaagttCAGACAGAATTCTTGGAGATTAAGCAAAATGGGTGTAAGGAAATGGAAGATAAACTGTTAGAAGAGACTAAGAATCAGAAATTAATACAGAAATTTGATATTGAAGGAGACAAGATGTTTAAGGAGACTCTTGAAGCAGTTGCTGCGATtgacaaaaaagaaatacaagatATGGACGCTGCAGTTGAAAAAAATAAGGAAATATCATTGTGTACTTTTTGCGGTAAGACATTTAAAACTTCAAGCAAGTTACGTTTACACCAGCGAGTACACACTGGCGAAACTCCGTATCACTGTCAGTTCTGTGAAAAAAGTTTCACCTCTCGTGGTCAATTGGTTGTTCATCTTCGAACACATACTGGTGAAAAACCACATATTTGTAATGTGTGTGGCAGAGCATTTGCACAGAGTAGTGTTCTTGGAACACATATGCGGCTTCACACTGGACGTCCTGAAGAATGCCAAGTGTGTGGTAGGCGTTTTTGTCGTCCTGCAGAATTAAGAACGCACATGCGTAGACACACAGGTGAAAAACCATACTTATGTACTATTTGTGGGCAAGGATTTGTTCAACGTTCCCATCTTGTTGAACACTGTAAAACTCACAGTGATGAAAGACCATTTTCCTGCAGTATATGTAACCGTTCTTTTAAACAGAATAGTGCTTTGCGTTCACATGTACAGATTCACACAGGCTCTAAGCCCTTTAAGTGTACACAATGTCCATATGCTTGCCGCCAAAGCTATGCTTTAAAACAGCATATGCGGCAACATGTACCAGATACCCAGACACGTCCAGACCGTGTGTACAAATGTCTAATTTGTGAACGATTCTTTAACAGTCAACAAATACTGACTGCACATATGCGTTGCATGCATTCTTTAGCGCAATAG
- Protein Sequence
- MDVSRLVELVDFKICRTCLAVDCEMVDVYDDSDNNSGLEEPLWIKLETITSTPVTVDDGLSPHVCLTCKTRLNESFAFKQLCHRSFVMLKQYTVNSAVSQLKSQLSLLDGQEDPSVLTRIEETPCDSQDPQDSPPDVNEEEIGPGEIINIGLKMPDSNEQTGSVAVTSETLSVRSEMVTLVSSQTETVTISSETGTVIISSETEAVAISSETEALAVGSELEAVTLETEPVAFSSETETDRSALESVISSEVNGEIVPAVISVIELSNGSSEKKSCKLCKFTASSSRGLSLHIAHLHKQLKGRWCSTCQCEVDNLRQHNIEEHVEKGDYGCNLCNKKFISQGHLKEHLQCHMNVRPFSCSQCSKQFISLRHLRVHERTHSGERPYICSYCPRAFTQSGSLRVHIRSRHPDQPVAGMTCNHQCNRCKNKYTTIKRLAIHKVKVCHDDDIDYPEDVEDRVKYVVAVLNKNSKVQTEFLEIKQNGCKEMEDKLLEETKNQKLIQKFDIEGDKMFKETLEAVAAIDKKEIQDMDAAVEKNKEISLCTFCGKTFKTSSKLRLHQRVHTGETPYHCQFCEKSFTSRGQLVVHLRTHTGEKPHICNVCGRAFAQSSVLGTHMRLHTGRPEECQVCGRRFCRPAELRTHMRRHTGEKPYLCTICGQGFVQRSHLVEHCKTHSDERPFSCSICNRSFKQNSALRSHVQIHTGSKPFKCTQCPYACRQSYALKQHMRQHVPDTQTRPDRVYKCLICERFFNSQQILTAHMRCMHSLAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -