Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_963971575.1
Location: OZ020614.1:13404235-13406130[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 2.7 6.4e+02 3.0 0.0 3 23 18 39 17 39 0.89

2 11 8.2e-06 0.002 20.4 1.0 1 23 71 93 71 93 0.99

3 11 0.00024 0.058 15.7 2.0 1 23 99 121 99 121 0.99

4 11 5.3e-05 0.013 17.8 8.7 1 23 127 149 127 150 0.96

5 11 0.00045 0.11 14.9 1.3 3 23 214 233 213 233 0.98

6 11 1.9e-06 0.00045 22.4 4.1 1 23 239 261 239 261 0.97

7 11 1.3e-05 0.003 19.8 1.0 3 23 269 289 267 289 0.96

8 11 5.2e-07 0.00013 24.1 1.6 2 23 295 316 295 316 0.98

9 11 9e-07 0.00022 23.4 0.6 1 23 322 344 322 344 0.97

10 11 0.00024 0.058 15.8 6.5 1 23 350 372 350 372 0.96

11 11 0.00017 0.042 16.2 5.5 1 23 378 400 378 400 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	2.7	6.4e+02	3.0	0.0	3	23	18	39	17	39	0.89
2	11	8.2e-06	0.002	20.4	1.0	1	23	71	93	71	93	0.99
3	11	0.00024	0.058	15.7	2.0	1	23	99	121	99	121	0.99
4	11	5.3e-05	0.013	17.8	8.7	1	23	127	149	127	150	0.96
5	11	0.00045	0.11	14.9	1.3	3	23	214	233	213	233	0.98
6	11	1.9e-06	0.00045	22.4	4.1	1	23	239	261	239	261	0.97
7	11	1.3e-05	0.003	19.8	1.0	3	23	269	289	267	289	0.96
8	11	5.2e-07	0.00013	24.1	1.6	2	23	295	316	295	316	0.98
9	11	9e-07	0.00022	23.4	0.6	1	23	322	344	322	344	0.97
10	11	0.00024	0.058	15.8	6.5	1	23	350	372	350	372	0.96
11	11	0.00017	0.042	16.2	5.5	1	23	378	400	378	400	0.98

Sequence Information

Coding Sequence: ATGGAACAGGCAACTCCCTGGTTAAAGATGGAGAACGATAGTAAATTATTATGTAAACTTTGCGGGTACGTCGCTATCAACGTTCGTGGCCTGGCCCTTCACACAGGTAGAGTGCATACATTGCTTAAAGGGCATTGGTGTAGTAAATGCCAAAAAGAGGTAGAGGATATTGGCCAGCACAACATTAGCGAGCACATTGAAAAAGGAGAATACAGATGTGATTTGTGTGATCGGAACTACAACTCAAAAAGCCGTTTAAACGAACACATTCGTATTCACATGAACGTTAAACCATTTAAGTGCAGTCAGTGTGATAAAAGATTTTTGAGGAAACGTCTTTTGGCATTGCACACCAGGATCCACTTAAATAGACGCCCATTTACATGTCCACATTGTCCACGTAAATACACACAGAATGGATCACTGAAGCATCATATCCATACACATCATCCTGACATGGAGAAAAGTGACGAAGTTGAAAATGTAGAGCATCGGTTTAAAGATATTGAGGAAAAGAAGACGGAGAATATAACAAATGTTACACCTGAAGAGATTCCTAAAATAGAAGAAGCAACAGATAAAAATTATGCTAAGGATACGAGTAACGATgaagatgaaaagaaaaatgatGGAGTATTATGCGACTTTTGTGGAAAGATTTTCACGAAGAATAATTTTCGCACGCATGTAAGAATTCATACACATGAGTCACCACATTATTGTGATATCTGTGACAAGCAATTTCGAACACGCACGCATCTTATCGTCCACATTCGCAGTCATACAGGAGAAAAGCCTCATTTATGCGTTATTTGTGGAGCCTCATTTAATCAATCCAGCGTACTTACTACCCATATGCGCAGGCACACCGGACGTCCAGAGAAATGTGAAGTTTGCGATAAGACTTTTTGTAGACCTGCAGGATTAAGAACGCATATGCTTACGCATTCGGGAGAAAAGCCATACATCTGTAATGTTTGTGGAAAAGGATTTGTCCAACGGTCGCACCTTAACCAACACGGTGCAACTCATACAGAAATACGTCCTCATTCATGTAAGGTGTGCAACACTACTTTCAAACATAGAAGTTCTTTGAAGTCGCATTCTCAAATTCACACAGGTGTTAAGCCCCACAAATGTCCTAAATGTCGATACACCACTCGCTTAAGATCTTCTTTGAAGTCGCATATGCGAAGGCACGTCAGGAACGAAGAAACCGTGGAGGAAAATGTTGAAGAATCCATAGAAAAAACATTtgaagaaatgcctcaaaaaaccGTTGGAGAAACCACCAAAGACATCAACCAAGAAACACTACAAAAAAGTCTGGGACAAATCATCCAAGAAACATTTGGAGAAACCTCCCCAGAAAGCCTCCTAAAAACCAGCCCTGCAACAATCTCAAAATCTCTCCCAGAAATAATCACAGAATCTCTCTCGGAAATCATCACAGAATCTCATCCAAACACTAGCCCAGAATCTCTTCCAGAATTTCTCCCAGAAGCCCTCCTAAAAACCCTTGGAGATACTCTCCAAGAAAATTTTCAACAAACCTTGGATGAATTTCTCCAAATAACCCCCCAGGAAACTTTTATGGAAACTCCTCACGATACCTTCCAAAAGATTCTAGAAAAAACTTTCCCAGAAACCGGCGATGAATCCTTCCCCGAAAAACTCCACGAAACACTGGAGGAAACTCTAGGCAAAATCCTTCAACAACCTCCTCCAGAACCAACGTTTGAGTGCAACTTTTTTGATCCTTCATTCGACAGTGAACATTTGAATAACTCACATTTTGATACCGAAGATAGTATGCTACTAGATTTTCCTTCATCGTCGTCAATACTTCCACCAGAGTTAGAAGAACTGTTTCCAGACATGGATTTATTGTTATAA
Protein Sequence: MEQATPWLKMENDSKLLCKLCGYVAINVRGLALHTGRVHTLLKGHWCSKCQKEVEDIGQHNISEHIEKGEYRCDLCDRNYNSKSRLNEHIRIHMNVKPFKCSQCDKRFLRKRLLALHTRIHLNRRPFTCPHCPRKYTQNGSLKHHIHTHHPDMEKSDEVENVEHRFKDIEEKKTENITNVTPEEIPKIEEATDKNYAKDTSNDEDEKKNDGVLCDFCGKIFTKNNFRTHVRIHTHESPHYCDICDKQFRTRTHLIVHIRSHTGEKPHLCVICGASFNQSSVLTTHMRRHTGRPEKCEVCDKTFCRPAGLRTHMLTHSGEKPYICNVCGKGFVQRSHLNQHGATHTEIRPHSCKVCNTTFKHRSSLKSHSQIHTGVKPHKCPKCRYTTRLRSSLKSHMRRHVRNEETVEENVEESIEKTFEEMPQKTVGETTKDINQETLQKSLGQIIQETFGETSPESLLKTSPATISKSLPEIITESLSEIITESHPNTSPESLPEFLPEALLKTLGDTLQENFQQTLDEFLQITPQETFMETPHDTFQKILEKTFPETGDESFPEKLHETLEETLGKILQQPPPEPTFECNFFDPSFDSEHLNNSHFDTEDSMLLDFPSSSSILPPELEELFPDMDLLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -