Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_963971575.1
Location: OZ020612.1:6183581-6186277[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0031 0.73 12.3 0.5 2 20 25 43 24 45 0.93

2 14 0.053 13 8.4 1.0 3 19 54 70 52 72 0.94

3 14 0.0047 1.1 11.7 0.5 2 23 79 101 78 101 0.94

4 14 6.8e-08 1.6e-05 26.9 0.8 1 23 107 129 107 129 0.99

5 14 0.0003 0.072 15.5 2.1 1 23 250 272 250 272 0.96

6 14 0.85 2.1e+02 4.6 0.3 1 15 280 294 280 300 0.79

7 14 0.00014 0.034 16.5 2.5 1 20 333 352 333 355 0.93

8 14 0.0019 0.47 12.9 0.1 1 23 360 383 360 383 0.97

9 14 1.7e-06 0.0004 22.5 0.7 1 23 389 411 389 411 0.98

10 14 0.00022 0.052 15.9 2.0 1 23 419 441 419 441 0.99

11 14 0.013 3 10.4 0.5 3 23 449 469 447 469 0.97

12 14 0.0075 1.8 11.0 0.6 1 23 475 498 475 498 0.96

13 14 0.0026 0.62 12.5 2.1 1 23 510 532 510 532 0.97

14 14 0.00017 0.04 16.3 0.0 1 23 600 622 600 622 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0031	0.73	12.3	0.5	2	20	25	43	24	45	0.93
2	14	0.053	13	8.4	1.0	3	19	54	70	52	72	0.94
3	14	0.0047	1.1	11.7	0.5	2	23	79	101	78	101	0.94
4	14	6.8e-08	1.6e-05	26.9	0.8	1	23	107	129	107	129	0.99
5	14	0.0003	0.072	15.5	2.1	1	23	250	272	250	272	0.96
6	14	0.85	2.1e+02	4.6	0.3	1	15	280	294	280	300	0.79
7	14	0.00014	0.034	16.5	2.5	1	20	333	352	333	355	0.93
8	14	0.0019	0.47	12.9	0.1	1	23	360	383	360	383	0.97
9	14	1.7e-06	0.0004	22.5	0.7	1	23	389	411	389	411	0.98
10	14	0.00022	0.052	15.9	2.0	1	23	419	441	419	441	0.99
11	14	0.013	3	10.4	0.5	3	23	449	469	447	469	0.97
12	14	0.0075	1.8	11.0	0.6	1	23	475	498	475	498	0.96
13	14	0.0026	0.62	12.5	2.1	1	23	510	532	510	532	0.97
14	14	0.00017	0.04	16.3	0.0	1	23	600	622	600	622	0.96

Sequence Information

Coding Sequence: ATGGCAGTTGAAGCTCTTCGTCAACTTGGAGGAATCTGCAATAACGTTCCTGAAACAGATCATTCTTTACTTACTTGTACATTATGTGAAACAAAATTTACTTCTACCACAAATCTACATGCTCATTACGCAGTCTGTGAACAAAATCTATCACTAGCATGTTCAAACTGTCAAGAAGTATTCGAAAACAAAATCGATTTCAATAACCATAATTGTTGTTTACAAGACATACAAACTTGTGAATATTGTCGacaaaattttttcaataaaacagATTTAGATTTACATATTAACGCTATCCACTCCGCTGATCGTATTTATCGATGTGAAATTTGTAATCAAACCTTTCCACGATCAAGtagtttaaaaaatcatattaaaattcataGTTACGTACCTGGGAGAGCGTTATTTAATTTCGTACCCGAAGAAACAAATTGGAACGATCAATTAGTTTACGATAAAAATACTGATGTGTTAAGCTCGTTTAATTATAATACAGCAACATGTTTAGTTCAAACCGAGCTTAATTCCGATGTTAAATTATCAAATCAAGATATAAATTATGAGGAAAATAATTTGGATGTCGTAGATAAAAATCTGTATCCATATCAAAACGATTTGAATTACCCTATTAAATTAGAGATGCAAAATTTATTGTTACCGGAAGTAGAAAAGGATGATAGATATCCAATTTCAAGTATTCCGCAAATGGAAGTTACTGTAACGTCTGATGGAAAAAGACCACACATTTGTTCGCATTGCGGAGCAACTTTTATGAGAGCAAAAGCGTTATCATCGCATTTAAAACTGCATTCAATTGTCTGGCGTAATAAACACGAATGTGATGCTTGTGGAGAATGTTTTGAAAATGAAGTGTTACAGCTTGATCATACagataattgtttattaaacaaCACGTATACAGAAGACAAATCTCCGAAACTTGTAACGGAACGAATAAAAAAACCCTTCCTTAAAACTAAACCTGGTAAACATTCTTGTCCggaatgtgataaaaaatttactacaaaacaaaaaatgtttagacATTTATGGATACATCGTAAAAAAACTTATACGTGTGAGATTTGTGCACAAGTTTTTGAAGTGCAAGTTGATTTGGATAAACATCGATTGTCACAACATCCGATGGATAGTCCTTACGTTTGTCAGGAGTGCGGAAAATGTTTTTCCAGTCGACAAGGGTTGTGGGAACATGGTAGAGTGCATGGAGCTGGAAATGCTGGGTTATATAAATGTTCGACGTGCTCAAAAACATTTGCCAGTCGACAGGGTTATCTAATACACAATCGAACAcatacaggcgAACGTCCATACGGTTGTCAATTTTGTATGAAAGCATTCCGAGATGGTGGAACATTACGAAAACATGAGCGAATCCATACAGGTGAAAGACCACACGTATGTCCAATATGTCTACACGACTTCAACCAAAAAGTAGTCCTTCGAGAACATGTTAGATGGGTACATGTTGCTGGAAAAACAGAGAACGTAAAAGGTTTATACGAGTGCAACCTATGTAGTTTTACAACGAAAGACAAAGAAGAATTATGTGCGCATACAGTAAGACATAGTGATCAGTTAGCGGCTCAAGTTAAAGCGGGGAAAGCACAAAAAACAAGAACGATAAGAAAAAATAGAAAAGTGAAAAGTAAAGTTAAGAAAGAAGTGGATAAGATTGAAGAACAGttaaaaattactgatttaagtGATAATATTACAGAGCTTACTGAAGTTAAACTTAGTGAACTTACGGAACTTTTAACGAAGAGTTTTGTTTGTGATATGTGTGGGCTTATGTTTGGAACGCAAAAAGAACTTGCAGCGCATGTtgttatacatatataa
Protein Sequence: MAVEALRQLGGICNNVPETDHSLLTCTLCETKFTSTTNLHAHYAVCEQNLSLACSNCQEVFENKIDFNNHNCCLQDIQTCEYCRQNFFNKTDLDLHINAIHSADRIYRCEICNQTFPRSSSLKNHIKIHSYVPGRALFNFVPEETNWNDQLVYDKNTDVLSSFNYNTATCLVQTELNSDVKLSNQDINYEENNLDVVDKNLYPYQNDLNYPIKLEMQNLLLPEVEKDDRYPISSIPQMEVTVTSDGKRPHICSHCGATFMRAKALSSHLKLHSIVWRNKHECDACGECFENEVLQLDHTDNCLLNNTYTEDKSPKLVTERIKKPFLKTKPGKHSCPECDKKFTTKQKMFRHLWIHRKKTYTCEICAQVFEVQVDLDKHRLSQHPMDSPYVCQECGKCFSSRQGLWEHGRVHGAGNAGLYKCSTCSKTFASRQGYLIHNRTHTGERPYGCQFCMKAFRDGGTLRKHERIHTGERPHVCPICLHDFNQKVVLREHVRWVHVAGKTENVKGLYECNLCSFTTKDKEELCAHTVRHSDQLAAQVKAGKAQKTRTIRKNRKVKSKVKKEVDKIEEQLKITDLSDNITELTEVKLSELTELLTKSFVCDMCGLMFGTQKELAAHVVIHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -