Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_963971575.1
Location: OZ020618.1:7051194-7071372[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.1e-05 0.0026 20.0 2.2 1 23 490 512 490 512 0.99

2 9 3.3e-05 0.008 18.5 0.3 2 23 518 539 517 539 0.97

3 9 9.1e-05 0.022 17.1 0.9 1 23 545 567 545 567 0.97

4 9 0.00021 0.051 15.9 2.5 1 23 573 596 573 596 0.96

5 9 0.0004 0.097 15.1 0.6 1 23 601 623 601 623 0.98

6 9 3.3e-05 0.0079 18.5 0.1 3 23 642 662 640 662 0.97

7 9 3.7e-07 9e-05 24.6 0.7 1 23 668 690 668 690 0.98

8 9 3e-08 7.2e-06 28.0 2.3 1 23 696 718 696 718 0.98

9 9 1.1e-05 0.0027 19.9 1.7 1 23 724 746 724 746 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.1e-05	0.0026	20.0	2.2	1	23	490	512	490	512	0.99
2	9	3.3e-05	0.008	18.5	0.3	2	23	518	539	517	539	0.97
3	9	9.1e-05	0.022	17.1	0.9	1	23	545	567	545	567	0.97
4	9	0.00021	0.051	15.9	2.5	1	23	573	596	573	596	0.96
5	9	0.0004	0.097	15.1	0.6	1	23	601	623	601	623	0.98
6	9	3.3e-05	0.0079	18.5	0.1	3	23	642	662	640	662	0.97
7	9	3.7e-07	9e-05	24.6	0.7	1	23	668	690	668	690	0.98
8	9	3e-08	7.2e-06	28.0	2.3	1	23	696	718	696	718	0.98
9	9	1.1e-05	0.0027	19.9	1.7	1	23	724	746	724	746	0.99

Sequence Information

Coding Sequence: ATGGCCAGTGCATTAGATTATATGCAATTATGTAGATTATGTTTAGTGAAAGACAAAGTTAACGTGCCAATATTTGGTGATGATAACGACGTTAGGCAAACATTCCTAAAGATTACAGCCTGTTTGCCTGTAAAGgttTCACAGAACGATAATCTACCTAAAAAAATATGCGATGGCTGTTTATATAAAGTAGATTTACTTTATCAATTTTGGAATACAACAGTAAACGCAGAGAAACAACTATTACAATGGGTAGGAGAAATAGGCGCAgatggaaatataaaaaatgcaaattcATCACCTCTCCTGACTCATGCTCATCCACATTCCATACAACCCGAGATTATACTAAAAGAAGAAAGACATGATATACCAGACACCCCTACGGAAACACCGCAGGGCTTCGGACAGCAGTTTGGATTCGGTCCGCAATTTGCCACAGTGGATATTAATAGTTCAAAACCAGTATCCACTGCGTCACCTGCAAAACGTGGTCGTGGACGAGCAATTCTAGTTAAAAAAGAAGAACCTCCAGCAACAGCAGTTAgtacaaatataaaacaatcGACTGAAGAAAGTATGGATGAAGATTCGAACGATAGAGTGGGTGGGCATGATGACTCTGATGATTCTATGGAAGAAACAGGAGGACGAATTGCAAAAGAAGAAGCTGAGTCTGAGGATGAATTTGACGACACCGGCGAGAGTTTGGAACCAACTACATTTGTAGGAGTGCCATCGGAAACACCTGAGGATCAACCCGGACCATCAGGATTGAACAAACCCGCTACTTCCACCGATACTGGAATACCCATCGATAAAGAGAAAAAGggaaggaaagcaatatctctTGAAGTGAAATTATGGATATTAGATCGCCTGCATGGAGGCGAAAGACCAGCACATATATCACGATCAATACAATTACCCGAATCAACAGTTCGAACAATTCGTAAGAACGAAGCAAAAATACGTATGAGTGCGTTAGCTGGATCATCATTAAGTGCTAAAACAGCATCTAGAGTAAGAGATACTAAAATGGAGATAATGGAAAAATCATTAATTGTTTGGATACAAGAAATGAAAAAGAGACCTGCTGATTTGGAAATAAGGAATAAGGCTGtggaaatatttaattatcttaaaaatgcAGCTCCGGAAAAGGATTCTCTTGAGTTTATAGCTAGTAAAGGATGGCAACGTACCGAAGAACCAAATACATCGGTGTTCAGACTAAATCCATACTTACTAAACTCAGAATCATCCAACTTCAATCTAAACCATTCAGTGTTCGGACTAAATTATTCTGTGTTTGAAGACCCGTTGAGACAAGAAAATCCAGCTCCAAAACATCCTATGTATGGACAAAATCTCTCCGTCGCTGGACAAAAATTTACAGTAGTTGGTCCACCGATATTCGTACCAAATTCAGaaatagataaaattaaatcaaataaagTTGAAGTGTTTAAATGTCCAGATTGTTCGAAGGAATATATggataaagaaaaattaaaacgacATAAACAAACGCATAGAGAAAAAACAATACCCTGTCCGCAGTGTAAAAggatgtttgtttttaaaagcGATATGGAAGTACACTTAAAAACTCACACAGGAGAAGCAAAGTTTAAATGTAAACTCTgcgacaaaatatttaagactaAAGTAGGGTTAGATTACCACGAAAGAGGTCATTTTTCAGACTATCGTTTTAAATGTGAGGAGTGCGGAAAAGGATTTTATTCACACAACCAATATCGTGACCATTACGCTGTAAAACATGAAGGTTTACGATTTAAATGTGACAAATGTAATGCATTACTTTCAACGAAGAGTTACTATATTGCACATATGAGAGCACATGATCCGTTACATGAAAAAAGAGTACggatacctaaaaaaaataataaagtgattTGTGATATATGCGGTAAAATATTATCTACGAACAGTTCTTTAAGCGATCATTTAAAGATTCATTCGGGAGAGAAGCCGTTTATTTGTGAAACTTGCGGTAAACcatttagtaataaaaaattactaaaagttCATGAACGAACACATACAAATGAGAAACCGTATTCTTGTACTGAATGTGATAAAACGTTCACGCAGAGAAGTACACTAACGATTCATATGCGGTATCACAGTGGAGTTCGGCCTTATAAATGTGAATTCTGTACTAAAGATTTTGTGTCAAGATCGTTGTTGAATAACCATGCTAAAACACATTGA
Protein Sequence: MASALDYMQLCRLCLVKDKVNVPIFGDDNDVRQTFLKITACLPVKVSQNDNLPKKICDGCLYKVDLLYQFWNTTVNAEKQLLQWVGEIGADGNIKNANSSPLLTHAHPHSIQPEIILKEERHDIPDTPTETPQGFGQQFGFGPQFATVDINSSKPVSTASPAKRGRGRAILVKKEEPPATAVSTNIKQSTEESMDEDSNDRVGGHDDSDDSMEETGGRIAKEEAESEDEFDDTGESLEPTTFVGVPSETPEDQPGPSGLNKPATSTDTGIPIDKEKKGRKAISLEVKLWILDRLHGGERPAHISRSIQLPESTVRTIRKNEAKIRMSALAGSSLSAKTASRVRDTKMEIMEKSLIVWIQEMKKRPADLEIRNKAVEIFNYLKNAAPEKDSLEFIASKGWQRTEEPNTSVFRLNPYLLNSESSNFNLNHSVFGLNYSVFEDPLRQENPAPKHPMYGQNLSVAGQKFTVVGPPIFVPNSEIDKIKSNKVEVFKCPDCSKEYMDKEKLKRHKQTHREKTIPCPQCKRMFVFKSDMEVHLKTHTGEAKFKCKLCDKIFKTKVGLDYHERGHFSDYRFKCEECGKGFYSHNQYRDHYAVKHEGLRFKCDKCNALLSTKSYYIAHMRAHDPLHEKRVRIPKKNNKVICDICGKILSTNSSLSDHLKIHSGEKPFICETCGKPFSNKKLLKVHERTHTNEKPYSCTECDKTFTQRSTLTIHMRYHSGVRPYKCEFCTKDFVSRSLLNNHAKTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -