Lhae047342.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020620.1:16215844-16229971[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0001 0.024 17.0 2.2 2 23 24 45 23 45 0.98 2 15 0.0021 0.5 12.8 0.8 1 23 51 74 51 74 0.95 3 15 0.01 2.5 10.6 2.0 2 23 78 100 77 100 0.96 4 15 3e-05 0.0073 18.6 0.5 3 20 110 127 108 129 0.92 5 15 0.00076 0.18 14.2 3.0 1 23 137 159 137 159 0.99 6 15 0.0015 0.35 13.3 0.4 1 23 165 187 165 187 0.98 7 15 0.0028 0.68 12.4 4.2 1 23 193 215 193 215 0.93 8 15 0.0036 0.88 12.0 0.6 1 22 221 242 221 242 0.93 9 15 0.01 2.5 10.6 0.6 3 20 465 482 463 484 0.92 10 15 3e-05 0.0072 18.6 0.2 2 23 522 544 521 544 0.94 11 15 4.2e-05 0.01 18.1 0.1 1 20 554 573 554 575 0.94 12 15 1.9e-05 0.0045 19.2 4.2 1 23 583 605 583 605 0.99 13 15 0.0038 0.92 12.0 2.6 3 23 613 633 612 633 0.98 14 15 0.0001 0.025 16.9 2.3 1 23 639 661 639 661 0.94 15 15 0.27 66 6.1 3.6 3 23 669 689 667 689 0.93
Sequence Information
- Coding Sequence
- ATGAAGgatgATTTGAGTGAAGAATCGAATAAATCTGAGAAAGATATTAAAACCGAACAGAAAATATCTCAGTGTAAGACTTGTGGccaaaaatttagatttttaaagGCCTTAGAAAAACATGAGCGAAGACACGAAGGAGAAGGTGGTTTTATATGTAGAACCTGCGGGATGACATTCACGTCAGCTGAAACTCGAGAAAAACATAGGGATAAAGAACATAAGataCTTCGTTGTCGAATATGTAACATACGATTCAACTCCGATACAGAATATTTTCATCATATAAACAGTCTACATGATGGCAGAGATCGAGAACTTTCAATCTGCAGTGAATGtggtaaacaatttaaaacaaaaggGGAGTTAAATCATCATGTTTCCTCAAAATGTGGCACTGTGAAGAAATACCAATGCCCACATTGTTTTCAAACGTTGATGACTGCTGGATCTCTACATAATCATATGTTACGACATAGTGGGCATAGATCTTTTATGTGCAGATATTGCGCTAAAACTTTTTTAACTGCTGGACAGCTAACGGTTCATGAAAGGATACATACACAGGAAAAAGCTTTCATATGTAATGTATGCAATAAAGGCTTTTGCCATCGACAAAGCTTAATAACACACAGCACTCTTCATACTGGAATTAAACCATATTTATGTGAAGGATGTGGGAAAGCTTTCTCATGCATcggaaatttattaaaacatcgtAAAACGCAGGTAGAATCATGTGGTAAAATACCATTAACAACTCACAGAGTAAAACATCCTGTCACAAAAATGAAAGTGCAAGTCAATACACCTGCAACATCTAAACTGAAAACACTCGAGAAGAAGAAACAAATTAAAGAGAAGATGGAGTTTATTACCAAGATGAAACAAgaaaatagtaatagtaattcATCTAATTCTAATGACTGTGATACAGATTCGAAACAAATAGATGAAGAgGAAAATTCTCAAAATGGAAATAATATACAGGAATCTGAAACTTATTTAAGTCAAAATAATTGGAATCAAAATAATGAAACCGatcaaaataaacatattttcacaaattattttacagaAACAAATGAGAGAGAACCAAATGATCATTCGGTtgagttaaaaaataatgttgaaaatgATGTGAAATCAGAAAATGACTCAGCTGATGATGATGACGATTGGCAAAATGATGGTTATGATAAAAGTTCTAGTGATAGTgatgaatcagatgattctgtaGATTTATTTTCACGTAAAATTAAAGCACAACAAGAAGAAATAACCGATAAAAGATCGCGTCGAAAAAGTAATTCTACCAAAAGTAAATCCCTTGGTAGTAGAGTTGCGGTTACGAAATTTTTAGAAGAAAGAGGAGCagataGCGAtactaattgtaaatattgtggCTGTAGTTACACAAATGTCATATGGTTGATGAGACACGAAGAAAAATGTAGACAAGAGAAAAAAGACAAAGGTTTTAAATGTAGTTGCTGCATTAGTATGTTTCCTACTAAAGAAGACTGTATTACCCACCAGCTATGTGAACATGCAGATATATTAACGTGTAAAGAATGTGATAAAATATTTGCGAACCCAGACAGCGTAAAGGCACACATAAATTTCTACCATAAAGGAGTGCCTAAGAaagtgtatatgtatgtatgtaagaCATGTGGTAAGGTGTACAAACAGAAAGCCTTACTGTTAGCACATGAACAGAACGACTGCCAGGATGGGCCAATGTACAAATGTCAAGTCTGTGATAAATCCTTCTCGAGTAAACATGTGAGAAAATCACACATGAGAGTGCACGAACCACAGAAATCTCTACTCTGCAAATTTTGTGGAAAGAGTTTCCATTGGAAAGGACAACTTAAGGTTCATGAAAGAAGTCATAcaggagaaaaaccattcagaTGCCAGCATTGTCCGAAAGCTTTTTCATATCGAGAGAGTCTAATAACACACAGTACTTTACATTCCGGAATAAAACCACACCTCTGCGGAGCTTGTGGCTCAAGATTTTCTTGTATTGGAAATCTACAAAAACACCGTAGAACGCACGCTTCTACTTGTGGAATGTTTAATAGGGTCAAAAGTGAAGAGTACATGTTGGCAACGTAA
- Protein Sequence
- MKDDLSEESNKSEKDIKTEQKISQCKTCGQKFRFLKALEKHERRHEGEGGFICRTCGMTFTSAETREKHRDKEHKILRCRICNIRFNSDTEYFHHINSLHDGRDRELSICSECGKQFKTKGELNHHVSSKCGTVKKYQCPHCFQTLMTAGSLHNHMLRHSGHRSFMCRYCAKTFLTAGQLTVHERIHTQEKAFICNVCNKGFCHRQSLITHSTLHTGIKPYLCEGCGKAFSCIGNLLKHRKTQVESCGKIPLTTHRVKHPVTKMKVQVNTPATSKLKTLEKKKQIKEKMEFITKMKQENSNSNSSNSNDCDTDSKQIDEEENSQNGNNIQESETYLSQNNWNQNNETDQNKHIFTNYFTETNEREPNDHSVELKNNVENDVKSENDSADDDDDWQNDGYDKSSSDSDESDDSVDLFSRKIKAQQEEITDKRSRRKSNSTKSKSLGSRVAVTKFLEERGADSDTNCKYCGCSYTNVIWLMRHEEKCRQEKKDKGFKCSCCISMFPTKEDCITHQLCEHADILTCKECDKIFANPDSVKAHINFYHKGVPKKVYMYVCKTCGKVYKQKALLLAHEQNDCQDGPMYKCQVCDKSFSSKHVRKSHMRVHEPQKSLLCKFCGKSFHWKGQLKVHERSHTGEKPFRCQHCPKAFSYRESLITHSTLHSGIKPHLCGACGSRFSCIGNLQKHRRTHASTCGMFNRVKSEEYMLAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -