Basic Information

Insect: Liopterus haemorrhoidalis
Gene Symbol: -
Assembly: GCA_963971575.1
Location: OZ020613.1:10663339-10667840[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.11 26 7.4 0.8 2 21 7 27 6 28 0.85

2 15 2.5 6e+02 3.1 0.0 3 20 35 52 34 54 0.94

3 15 0.87 2.1e+02 4.6 0.5 1 12 148 159 148 162 0.91

4 15 0.0024 0.57 12.6 1.5 1 21 316 336 316 337 0.95

5 15 1.6e-05 0.0039 19.5 3.1 1 23 344 366 344 366 0.98

6 15 7.3e-06 0.0017 20.5 0.4 1 23 378 400 378 400 0.98

7 15 0.021 5.1 9.6 0.9 1 23 430 451 430 451 0.83

8 15 3.2e-06 0.00076 21.7 3.1 1 23 457 479 457 479 0.98

9 15 0.002 0.47 12.9 4.7 1 23 485 507 485 507 0.97

10 15 0.00025 0.059 15.7 2.7 1 23 513 535 513 535 0.99

11 15 7.7e-07 0.00019 23.6 4.2 1 23 541 563 541 563 0.98

12 15 0.0016 0.38 13.2 6.7 1 23 569 591 569 591 0.98

13 15 2.5e-05 0.006 18.9 0.2 1 23 597 619 597 619 0.98

14 15 3.9e-05 0.0094 18.2 0.2 1 23 623 645 623 645 0.98

15 15 0.00071 0.17 14.3 0.1 1 23 653 676 653 676 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.11	26	7.4	0.8	2	21	7	27	6	28	0.85
2	15	2.5	6e+02	3.1	0.0	3	20	35	52	34	54	0.94
3	15	0.87	2.1e+02	4.6	0.5	1	12	148	159	148	162	0.91
4	15	0.0024	0.57	12.6	1.5	1	21	316	336	316	337	0.95
5	15	1.6e-05	0.0039	19.5	3.1	1	23	344	366	344	366	0.98
6	15	7.3e-06	0.0017	20.5	0.4	1	23	378	400	378	400	0.98
7	15	0.021	5.1	9.6	0.9	1	23	430	451	430	451	0.83
8	15	3.2e-06	0.00076	21.7	3.1	1	23	457	479	457	479	0.98
9	15	0.002	0.47	12.9	4.7	1	23	485	507	485	507	0.97
10	15	0.00025	0.059	15.7	2.7	1	23	513	535	513	535	0.99
11	15	7.7e-07	0.00019	23.6	4.2	1	23	541	563	541	563	0.98
12	15	0.0016	0.38	13.2	6.7	1	23	569	591	569	591	0.98
13	15	2.5e-05	0.006	18.9	0.2	1	23	597	619	597	619	0.98
14	15	3.9e-05	0.0094	18.2	0.2	1	23	623	645	623	645	0.98
15	15	0.00071	0.17	14.3	0.1	1	23	653	676	653	676	0.96

Sequence Information

Coding Sequence: ATGGGTTCATTACAATTTGACTGTCCTCTATGTTGTAATGAGATttttacatctcaacaatcgttaaaatatcatttgttgAGTATTATTGACAATTTATTATGTACAGTTTGTTCAAGTAGATTTGAAACTATACTAGATTTGGCAAAACATTTGGATGAGGAATGTGGGAAAACAACACAAGAAGAGGCGCCTAATTTAAATACCtttgaaaatatacaaataaaaattgaaaatgaagATTCAGATGATGAAATCAGTAATAGTATCTTAGCTAAAGCCCTGCTAGCTTCTCCAAAAAATAGTGAACATACGATGGAAACTGACATTAGCAATGTTGATAATAAAAATGAGGATGATGATGTAGGTACGGAAGCTGAAAATTTACCAGAAGATAATCAGGAAGGCGGAGAAGAGGAGAATGATGAAAATGGTGATATGTATTCGTGTTCCAGTTGTGGCGTTAGCTTTACAtctatttttgatcatattcaAGAATATCACGCTGGTCAGGAAGTTGTCATCgagaCACCTGAAGACAACGATGAAAGTGATGGAAATGTCCTAACAACTCTAACGGCAGAGAATGATATATTAACAAATCTTCCCGAAGGTGCAACATTGATTGCAAGTGATGGAGTTGTTTTAAAAGATTTTGCAGCGAACtttgaagaagatattgatagtaACGAAAGTCAAGATTTAGGCGATAATTCACGTGTAAGAATGCCTCaaatattaaacacattaaaacAAGAAGACTGTATTGATAAAGACGGTAGACTTTACACACGTAAAGTAGTACAGATAGAAAAATTTTGGGACGATGAAATAGAAAAATCCAAAGTACcagttgttttaaaatatttaataggtgATGAAGGAActttaataaaagtaaaaaaccaAGAAGAAATAACTGATGAAATGCAAATCGTAGAAATGTATCAATGTAGTAACTGTGGTGTTCAATTTTCAAAACGAGATCAATTTGATACTCATATCTGTGATCCAGAAGTAGGTagtgaatataaatgtaacgtTTGTTCTGCTACATTTACAAATTCACAATCTTTATGCGTTCATATgaaacagcataaaaataaaaaatcagatgATATGTCTGGTCCATTTATTTGTGGGGTTTGTGATACTGTCTTCCCAACAAATAAATCATTACGTTTACACAGACGTATGCACGATCCAATTAAAAGTAAAGAAATAGAACCTCCAGTCGAATACGGCTTAATGGGAGATGACGTAGCAGTAACAAAACCGAGAGAAATGTTTGAATGTAAGATTTGTGGGAAGAACTACGATAAAAGTTACGAACAAATGCACATGGCGTATCATAGCGGGGTTAATCATTATGATTGTTATATTTGTAATCGTAAATTTTACACCCATAGTAATTTAGAGATGCATATGCGGGTACATGGTAATGAAAAAGGACATACATGTCAACACTGCAAAAAGGGATTTCAGAACGTAGAGAGTTTAGAACAACATTTAAAACAACACTGTAGCACAAGGCCTTATCAGTGTAGTTATTGTTCTCGAAGATTTGCTCGTCCACACGAAAAAGTTAAACATGAAAGAATTCATACTGGAGAAAAACCGCATGAGTGTGAAATCTGCGGGAAAACTTTCCGGGTCAGTTATTGTTTAACGTTACATATGCGAACACACTCAGGTTTTCGACCGTACGTTTGTCAGCACTGCGGAAAGCGTTTTAAAGCCCATAGCGTTTACAATCACCACCTGTTAACTCACTCTGATGTTAGAGCTTATAAATGTCCGTACTGCCCGAAAGCTTTTAAAACCGGGGTCCAGCTTGCTGGTCATAAAAATAGCCATACTAAACCGTTCAGTTGTACGCAATGTAATCGTCCATTTGCTTCGTTATATGCTGTACGTGCACACATGGAAACTCATAAAagagaaaacaatttaaaatataattgttatctTTGCGGTGCTTCTTATGCAAGAGCATTTGCTTTACGAGATCATATTAAAGAGCAACATGTTAATAGTCCACAGAATGGTTCTGTTTCTTTAGATATTATTGAAGAAGGAATGGAGGCTACTACTTCTATTTTACCTGATAGTGATGATATTTCTATGGTAACTTTAGAAGAGATTGCCCATGTTTCAGATATGGAAGATGATAATAATGATCAATAG
Protein Sequence: MGSLQFDCPLCCNEIFTSQQSLKYHLLSIIDNLLCTVCSSRFETILDLAKHLDEECGKTTQEEAPNLNTFENIQIKIENEDSDDEISNSILAKALLASPKNSEHTMETDISNVDNKNEDDDVGTEAENLPEDNQEGGEEENDENGDMYSCSSCGVSFTSIFDHIQEYHAGQEVVIETPEDNDESDGNVLTTLTAENDILTNLPEGATLIASDGVVLKDFAANFEEDIDSNESQDLGDNSRVRMPQILNTLKQEDCIDKDGRLYTRKVVQIEKFWDDEIEKSKVPVVLKYLIGDEGTLIKVKNQEEITDEMQIVEMYQCSNCGVQFSKRDQFDTHICDPEVGSEYKCNVCSATFTNSQSLCVHMKQHKNKKSDDMSGPFICGVCDTVFPTNKSLRLHRRMHDPIKSKEIEPPVEYGLMGDDVAVTKPREMFECKICGKNYDKSYEQMHMAYHSGVNHYDCYICNRKFYTHSNLEMHMRVHGNEKGHTCQHCKKGFQNVESLEQHLKQHCSTRPYQCSYCSRRFARPHEKVKHERIHTGEKPHECEICGKTFRVSYCLTLHMRTHSGFRPYVCQHCGKRFKAHSVYNHHLLTHSDVRAYKCPYCPKAFKTGVQLAGHKNSHTKPFSCTQCNRPFASLYAVRAHMETHKRENNLKYNCYLCGASYARAFALRDHIKEQHVNSPQNGSVSLDIIEEGMEATTSILPDSDDISMVTLEEIAHVSDMEDDNNDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -