Lhae040753.1
Basic Information
- Insect
- Liopterus haemorrhoidalis
- Gene Symbol
- -
- Assembly
- GCA_963971575.1
- Location
- OZ020618.1:1114912-1119048[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0072 1.7 11.1 0.4 1 23 159 181 159 181 0.97 2 15 0.00013 0.03 16.6 0.2 1 21 188 208 188 209 0.95 3 15 0.044 10 8.6 1.0 1 23 227 249 227 249 0.97 4 15 0.0054 1.3 11.5 1.4 2 23 266 287 266 287 0.97 5 15 6.1e-05 0.015 17.6 0.5 1 23 299 321 299 321 0.98 6 15 0.009 2.2 10.8 1.3 1 23 340 362 340 362 0.98 7 15 0.00017 0.042 16.2 6.3 1 23 414 436 414 436 0.98 8 15 0.058 14 8.3 0.6 2 23 443 465 442 465 0.93 9 15 1.1e-05 0.0027 19.9 0.4 1 23 471 493 471 493 0.98 10 15 0.00016 0.039 16.3 1.3 1 23 499 521 499 521 0.98 11 15 2.5e-06 0.00059 22.0 0.5 1 23 527 549 527 549 0.98 12 15 3.7e-06 0.0009 21.4 0.6 1 23 555 577 555 577 0.99 13 15 0.00085 0.2 14.0 2.5 1 23 583 605 583 605 0.98 14 15 2.8e-07 6.6e-05 25.0 1.9 1 23 611 633 611 633 0.96 15 15 1.9e-05 0.0045 19.2 1.5 1 23 639 661 639 661 0.98
Sequence Information
- Coding Sequence
- ATGATTTCTTTAAGTGCAGACCATGTTGCTTCGGAAAGAGTTATGCCTATTTCAGCTTTGATACTCTTATGCTCTTCGGTAGAggttagttCAGGTGATGGTTTTCCTCAATTTATTTGTTTGGATTGTTTAAAATCAGCAGAGAAGTCATATTCCTTTCGTATCCTATGTCAAGAATCTGATAAAGCACTAAAATTACAAACTACAGAAgacattataataaaatatgattcAAGTGACGATGTTAAAGATTTAGAATCGGCAAACGAGAATGAATCGGAACCGTATATGGAAATTGAAACTATCGATGATGAAATGCAAAGTGAAATTTTAGAAGAAAATGTTTTAAgtcaagaaattattattgaaaaagatgGTACTGTTACTGAAGAAGTTTCCGTGGAGTTTGTTAGTTGTCCAGCTGAACTTTCCGACGATGGTGATTGTGAAATAGTTGTTGTTCAAGaggaaaattataattgttCAGTTTGCGAGCTTAAGTTTCCATCTACGTTAGCATtgaataaacattttcaaataCATCAAGTTACACCTACGTATTTTTCTTGTTCAAAATGCACTATAAGatttgcAACTCCagcattattaaaaaaacacattctcAAATCTTGCCGTAACAACTCAAGAATAAAAACAAGACGGAGTAGAAAAAAAGGTCATAAATGTGCTCTATGTTCACAATTTTTCCCAACGATCCTAGAATTAAGAAGTCATGTTTCATCCCATGAAACTCAGTTTAAAAAACTTCAACCCgtaaaaccaaaattttcaaacgAATGTCCAAAATGTCAAGTACATTTCGAGAACGAGGAAGATATGAAAAAACATTTCGAAACTCacgaaaaaaaagaaagaaaagtgaatgttaataaatatatttgtcaaTATTGTTTCGAAGGGTTTAGTACGTCTATTTTATTGCAACAACACTTAAAAATACATAACGAAGGAAGTAAAGAAGGTACAAAGAAAGataacctccaaaaaaatattatttataagtgtaATATTTGTGATTTTGAATTTAACGCTTTAAGTTGTATTAAAGAACATTTAGTTACGCATGAAATTGAAAccaaagatatatttaaaaatattaagtgtaaGTGTACAGAATGTGAAGATTCTCCGGAGTTTAATACCATATACGAGCATTACCAGCATTCTTTAACGCACATAAATATAGATTTAACATTTACGGAGAATGTGAaaagaaaatatgtatgtaGTACTTGCGGAAAGTGTTTTACGACAAGATTTAGACTTTCGAAACATAAGACTACGCATGAAAGCCAGTGGCCAAAGAAATGTAAATATTGTGAGAATGTTTTGGCTACGAGAGCTGATTATATGAAACATGTTAATGATAAACATGACGATATGAAAACTtatgtttgtaatcagtgcggAAAGAAGTTTATTAAGGATCGGAACTTACAAAGTCATCTTGCGATCCATTCGGGAGAGAGAAATTATATGTGTGATATTTGTGGGTTTAGTTTTCACGCTCAAAATAATTTGGTATCCCATAGGCGTCTCCATACTGGTgtaaaaccatacaaatgtacGTATTGTCCTAAGGCATTTTCGCAGTACGCAGGTCTACGATCACATCTTATTAATCATACGGGAGAGAGAAAATATAGTTGTCCGATATGTAATAAGAAGTTCGCACGTATCAGCGCTCAAAAAAACCATATCAAAACACATACGGGAGAAAAAGATTACGCCTGTCATTTATGCGATAAACGCTTTGGAGCATCGTCCACtcgaaaaaaacatttattaacacATACAGgTGAACGTAATCATATTTGTGATTTCTGCGGTAAGGCATTTAGTCGTCGATCAAACTTAAATGTTCATCGTAAAATACACACGGGTGAAACTCCACATGTTTGTGAAATCTGCGGTAAAGGTTTTATACAAGCACACGTTCTGAGATCGCATCGAAATACACATCGTAAACAACAAGCGATCGAGGAAGCTTATAAAgctaaaaatgaagaaataaattcCAATGATATTGTTAATAATTCGGAAGAGTTAACTATATTAGTTGATTTGAATTAA
- Protein Sequence
- MISLSADHVASERVMPISALILLCSSVEVSSGDGFPQFICLDCLKSAEKSYSFRILCQESDKALKLQTTEDIIIKYDSSDDVKDLESANENESEPYMEIETIDDEMQSEILEENVLSQEIIIEKDGTVTEEVSVEFVSCPAELSDDGDCEIVVVQEENYNCSVCELKFPSTLALNKHFQIHQVTPTYFSCSKCTIRFATPALLKKHILKSCRNNSRIKTRRSRKKGHKCALCSQFFPTILELRSHVSSHETQFKKLQPVKPKFSNECPKCQVHFENEEDMKKHFETHEKKERKVNVNKYICQYCFEGFSTSILLQQHLKIHNEGSKEGTKKDNLQKNIIYKCNICDFEFNALSCIKEHLVTHEIETKDIFKNIKCKCTECEDSPEFNTIYEHYQHSLTHINIDLTFTENVKRKYVCSTCGKCFTTRFRLSKHKTTHESQWPKKCKYCENVLATRADYMKHVNDKHDDMKTYVCNQCGKKFIKDRNLQSHLAIHSGERNYMCDICGFSFHAQNNLVSHRRLHTGVKPYKCTYCPKAFSQYAGLRSHLINHTGERKYSCPICNKKFARISAQKNHIKTHTGEKDYACHLCDKRFGASSTRKKHLLTHTGERNHICDFCGKAFSRRSNLNVHRKIHTGETPHVCEICGKGFIQAHVLRSHRNTHRKQQAIEEAYKAKNEEINSNDIVNNSEELTILVDLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -